Wall clock time and date at job start Tue Mar 31 2020 06:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 O 1.42901 * 109.47343 * 239.99730 * 2 1 3 5 5 C 1.53004 * 109.46938 * 119.99674 * 2 1 3 6 6 N 1.46493 * 115.55422 * 277.79923 * 5 2 1 7 7 C 1.34778 * 120.00043 * 293.50642 * 6 5 2 8 8 O 1.21581 * 119.99887 * 355.46134 * 7 6 5 9 9 N 1.34781 * 119.99948 * 175.46062 * 7 6 5 10 10 C 1.39952 * 120.00189 * 184.81036 * 9 7 6 11 11 C 1.39286 * 119.94741 * 322.80360 * 10 9 7 12 12 C 1.38485 * 120.42762 * 179.75772 * 11 10 9 13 13 C 1.37676 * 120.32107 * 0.51770 * 12 11 10 14 14 C 1.40744 * 119.88779 * 359.74260 * 13 12 11 15 15 C 1.41402 * 120.21377 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99985 * 143.15049 * 15 14 13 17 17 C 1.39935 * 119.99946 * 323.15278 * 15 14 13 18 18 N 1.30828 * 119.99773 * 160.93190 * 17 15 14 19 19 Si 1.86793 * 120.00066 * 340.93055 * 17 15 14 20 20 H 1.48500 * 109.47328 * 85.37733 * 19 17 15 21 21 H 1.48502 * 109.47332 * 205.37974 * 19 17 15 22 22 H 1.48504 * 109.47382 * 325.37870 * 19 17 15 23 23 C 1.38239 * 119.94348 * 143.07570 * 10 9 7 24 24 C 1.53002 * 117.49375 * 132.09544 * 5 2 1 25 25 C 1.53000 * 117.49477 * 63.47661 * 5 2 1 26 26 H 1.09000 * 109.46820 * 174.97284 * 1 2 3 27 27 H 1.08992 * 109.47261 * 294.97537 * 1 2 3 28 28 H 1.08999 * 109.47100 * 54.97801 * 1 2 3 29 29 H 0.96698 * 114.00110 * 300.00010 * 4 2 1 30 30 H 0.97000 * 119.99614 * 113.49611 * 6 5 2 31 31 H 0.97002 * 119.99752 * 4.81447 * 9 7 6 32 32 H 1.08003 * 119.78320 * 0.02562 * 11 10 9 33 33 H 1.08004 * 119.84100 * 180.23845 * 12 11 10 34 34 H 1.08004 * 120.05622 * 179.75845 * 13 12 11 35 35 H 0.97005 * 119.99973 * 179.97438 * 18 17 15 36 36 H 1.07991 * 120.16095 * 359.96099 * 23 10 9 37 37 H 1.09004 * 117.50379 * 359.97438 * 24 5 2 38 38 H 1.09000 * 117.49960 * 145.02383 * 24 5 2 39 39 H 1.09005 * 117.49378 * 214.97605 * 25 5 2 40 40 H 1.08995 * 117.50220 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2493 6 7 2.0815 0.0851 2.4717 7 6 2.9347 1.1242 2.5649 8 8 3.7271 1.3424 1.6690 9 7 2.9096 1.9214 3.6514 10 6 3.7242 3.0582 3.7043 11 6 5.0056 3.0213 3.1595 12 6 5.8183 4.1418 3.2019 13 6 5.3718 5.3023 3.7930 14 6 4.0813 5.3528 4.3525 15 6 3.6156 6.5413 4.9608 16 1 2.5803 6.8310 4.8573 17 6 4.4960 7.3421 5.6968 18 7 4.1950 8.5916 5.9410 19 14 6.1010 6.6270 6.3306 20 1 7.1377 6.7222 5.2716 21 1 6.5438 7.3877 7.5266 22 1 5.8976 5.2024 6.6974 23 6 3.2579 4.2141 4.3021 24 6 3.1332 -1.7747 1.0599 25 6 1.7040 -2.2068 1.3939 26 1 -0.3633 -1.0237 -0.0901 27 1 -0.3633 0.4339 0.9315 28 1 -0.3633 0.5898 -0.8416 29 1 1.7211 -1.5953 -1.2328 30 1 1.4948 -0.1289 3.2139 31 1 2.3268 1.7073 4.3967 32 1 5.3661 2.1142 2.6972 33 1 6.8088 4.1038 2.7731 34 1 6.0107 6.1724 3.8271 35 1 4.8051 9.1466 6.4515 36 1 2.2660 4.2425 4.7280 37 1 3.4888 -1.9544 0.0453 38 1 3.8836 -1.8681 1.8449 39 1 1.5141 -2.5844 2.3987 40 1 1.1193 -2.6703 0.5993 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596926603.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:05 Heat of formation + Delta-G solvation = -53.554455 kcal Electronic energy + Delta-G solvation = -22777.576314 eV Core-core repulsion = 19363.983626 eV Total energy + Delta-G solvation = -3413.592689 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.71025 -40.20152 -39.00638 -36.60123 -35.98691 -35.07231 -33.67847 -32.13083 -31.53136 -30.12040 -27.02644 -25.23060 -24.06260 -23.22114 -22.83754 -21.93460 -20.82085 -19.55712 -19.40632 -18.41961 -17.66870 -17.33275 -16.70450 -16.54884 -16.21700 -15.82155 -15.52820 -15.41898 -15.10853 -14.56625 -14.44491 -14.25215 -13.83661 -13.71766 -13.47002 -12.86981 -12.77618 -12.65615 -12.49512 -12.39535 -12.36972 -12.03524 -11.89278 -11.64792 -11.45366 -11.31557 -11.17634 -10.93719 -10.65186 -9.95780 -9.49119 -8.86433 -8.83729 -6.49864 0.70099 0.78045 1.31830 1.41136 1.48388 1.52149 2.09423 2.17327 2.65449 2.72185 3.11504 3.40067 3.46248 3.64550 3.83627 3.92097 4.27440 4.30130 4.34355 4.56291 4.59823 4.66219 4.72536 4.84300 4.86621 4.98334 4.99441 5.02264 5.09480 5.19406 5.22884 5.37143 5.55338 5.59631 5.66912 5.84386 5.96328 6.02382 6.27925 6.42751 6.72491 6.81557 6.86121 7.04236 7.55199 8.25021 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033438 B = 0.003425 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.180584 B = 8173.926697 C = 8381.530715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.134 3.866 3 H 0.061 0.939 4 O -0.566 6.566 5 C 0.067 3.933 6 N -0.694 5.694 7 C 0.699 3.301 8 O -0.604 6.604 9 N -0.674 5.674 10 C 0.187 3.813 11 C -0.219 4.219 12 C -0.077 4.077 13 C -0.247 4.247 14 C 0.089 3.911 15 C -0.495 4.495 16 H 0.058 0.942 17 C 0.054 3.946 18 N -0.855 5.855 19 Si 0.956 3.044 20 H -0.255 1.255 21 H -0.273 1.273 22 H -0.259 1.259 23 C -0.230 4.230 24 C -0.182 4.182 25 C -0.130 4.130 26 H 0.090 0.910 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.388 0.612 30 H 0.415 0.585 31 H 0.418 0.582 32 H 0.115 0.885 33 H 0.125 0.875 34 H 0.101 0.899 35 H 0.292 0.708 36 H 0.115 0.885 37 H 0.107 0.893 38 H 0.081 0.919 39 H 0.119 0.881 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.071 -23.005 -5.244 24.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.074 3.926 3 H 0.079 0.921 4 O -0.373 6.373 5 C -0.022 4.022 6 N -0.352 5.352 7 C 0.400 3.600 8 O -0.481 6.481 9 N -0.323 5.323 10 C 0.093 3.907 11 C -0.240 4.240 12 C -0.095 4.095 13 C -0.266 4.266 14 C 0.086 3.914 15 C -0.525 4.525 16 H 0.076 0.924 17 C -0.160 4.160 18 N -0.483 5.483 19 Si 0.779 3.221 20 H -0.180 1.180 21 H -0.199 1.199 22 H -0.183 1.183 23 C -0.252 4.252 24 C -0.220 4.220 25 C -0.167 4.167 26 H 0.109 0.891 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.238 0.762 30 H 0.253 0.747 31 H 0.255 0.745 32 H 0.133 0.867 33 H 0.143 0.857 34 H 0.119 0.881 35 H 0.102 0.898 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.100 0.900 39 H 0.137 0.863 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.151 -22.008 -6.086 23.648 hybrid contribution -0.145 0.033 1.216 1.225 sum -6.297 -21.975 -4.869 23.372 Atomic orbital electron populations 1.22371 0.93494 1.04170 1.02680 1.21320 0.94071 0.94915 0.82308 0.92084 1.86667 1.77646 1.30241 1.42791 1.21331 1.06971 0.87540 0.86320 1.44140 1.41782 1.30750 1.18495 1.16132 0.81589 0.80191 0.82114 1.90938 1.41891 1.73968 1.41353 1.42393 1.45215 1.24928 1.19730 1.17292 0.89622 0.85523 0.98273 1.20762 0.93998 0.99590 1.09637 1.20867 0.99046 0.92434 0.97179 1.21351 0.98893 0.98719 1.07667 1.17623 0.91779 0.91848 0.90144 1.19293 0.97540 1.04371 1.31295 0.92410 1.26664 1.01754 0.93520 0.94021 1.69739 1.39292 1.06785 1.32440 0.85643 0.78416 0.79762 0.78271 1.17991 1.19905 1.18253 1.20984 1.01625 0.91265 1.11347 1.23349 0.93150 1.01975 1.03560 1.23537 0.96908 0.90549 1.05676 0.89141 0.91473 0.92399 0.76238 0.74670 0.74483 0.86741 0.85740 0.88060 0.89787 0.86685 0.87469 0.90012 0.86285 0.84750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.52 9.35 71.98 0.67 -1.85 16 2 C 0.13 2.93 3.73 30.60 0.11 3.05 16 3 H 0.06 1.96 7.20 -2.39 -0.02 1.95 16 4 O -0.57 -11.73 12.02 -148.98 -1.79 -13.52 16 5 C 0.07 1.25 1.63 3.61 0.01 1.26 16 6 N -0.69 -14.47 5.46 -438.01 -2.39 -16.86 16 7 C 0.70 22.29 8.13 179.05 1.46 23.74 16 8 O -0.60 -25.01 13.12 -3.97 -0.05 -25.06 16 9 N -0.67 -21.41 5.33 -317.32 -1.69 -23.10 16 10 C 0.19 7.85 6.25 38.10 0.24 8.09 16 11 C -0.22 -9.68 8.69 22.58 0.20 -9.49 16 12 C -0.08 -3.43 10.02 22.20 0.22 -3.20 16 13 C -0.25 -12.15 7.37 22.75 0.17 -11.98 16 14 C 0.09 4.62 4.89 -21.31 -0.10 4.52 16 15 C -0.49 -28.04 9.52 23.46 0.22 -27.81 16 16 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 17 C 0.05 2.94 5.36 85.25 0.46 3.40 16 18 N -0.86 -47.61 13.93 21.82 0.30 -47.31 16 19 Si 0.96 43.22 25.16 68.60 1.73 44.95 16 20 H -0.26 -11.08 6.40 99.48 0.64 -10.44 16 21 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 22 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 23 C -0.23 -10.60 9.71 22.85 0.22 -10.38 16 24 C -0.18 -3.28 9.72 30.60 0.30 -2.98 16 25 C -0.13 -1.21 9.43 30.59 0.29 -0.92 16 26 H 0.09 0.76 7.70 -2.39 -0.02 0.74 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.39 3.95 7.77 -74.06 -0.58 3.38 16 30 H 0.42 5.50 8.85 -92.71 -0.82 4.68 16 31 H 0.42 9.79 8.84 -92.71 -0.82 8.97 16 32 H 0.11 5.07 6.36 -2.91 -0.02 5.05 16 33 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 34 H 0.10 4.99 5.49 -2.91 -0.02 4.97 16 35 H 0.29 14.63 8.30 -92.70 -0.77 13.86 16 36 H 0.12 4.90 8.06 -2.92 -0.02 4.88 16 37 H 0.11 1.95 6.98 -2.39 -0.02 1.93 16 38 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.12 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.13 0.47 7.35 -2.39 -0.02 0.45 16 Total: -1.00 -73.68 331.00 -0.62 -74.30 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: -1.19 Total: 31.17 kcal Atomic # 6 Polarization: -29.03 SS G_CDS: 4.46 Total: -24.57 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -3.78 Total: -87.27 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -1.84 Total: -38.58 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.73 Total: 44.95 kcal Total: -73.68 -0.62 -74.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596926603.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.749 kcal (2) G-P(sol) polarization free energy of solvation -73.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds