Wall clock time and date at job start Tue Mar 31 2020 06:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46950 * 2 1 4 4 O 1.42901 * 109.46888 * 120.00094 * 2 1 3 5 5 C 1.53003 * 109.46891 * 240.00140 * 2 1 3 6 6 N 1.46497 * 115.54589 * 182.69500 * 5 2 1 7 7 C 1.34777 * 120.00047 * 301.88721 * 6 5 2 8 8 O 1.21588 * 119.99848 * 355.24806 * 7 6 5 9 9 N 1.34776 * 120.00224 * 175.25334 * 7 6 5 10 10 C 1.39960 * 120.00085 * 184.49242 * 9 7 6 11 11 C 1.39284 * 119.94815 * 325.23158 * 10 9 7 12 12 C 1.38484 * 120.42917 * 179.76561 * 11 10 9 13 13 C 1.37679 * 120.32306 * 0.51023 * 12 11 10 14 14 C 1.40743 * 119.88157 * 359.74500 * 13 12 11 15 15 C 1.41407 * 120.20973 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00254 * 27.60039 * 15 14 13 17 17 C 1.39934 * 119.99882 * 207.59918 * 15 14 13 18 18 N 1.30825 * 120.00271 * 11.91870 * 17 15 14 19 19 Si 1.86807 * 119.99862 * 191.91894 * 17 15 14 20 20 H 1.48498 * 109.46879 * 60.00087 * 19 17 15 21 21 H 1.48497 * 109.46962 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47065 * 299.99916 * 19 17 15 23 23 C 1.38233 * 119.94275 * 145.50385 * 10 9 7 24 24 C 1.52996 * 117.49795 * 37.02409 * 5 2 1 25 25 C 1.52998 * 117.49866 * 328.36141 * 5 2 1 26 26 H 1.09004 * 109.47357 * 180.62615 * 1 2 3 27 27 H 1.09001 * 109.47152 * 60.62735 * 1 2 3 28 28 H 1.08995 * 109.47242 * 300.62927 * 1 2 3 29 29 H 0.96696 * 113.99798 * 60.00458 * 4 2 1 30 30 H 0.96998 * 120.00328 * 121.89321 * 6 5 2 31 31 H 0.96997 * 119.99789 * 4.49242 * 9 7 6 32 32 H 1.08003 * 119.78460 * 0.02562 * 11 10 9 33 33 H 1.08003 * 119.83930 * 180.23400 * 12 11 10 34 34 H 1.08003 * 120.05990 * 179.77165 * 13 12 11 35 35 H 0.97005 * 120.00405 * 180.02562 * 18 17 15 36 36 H 1.07999 * 120.16478 * 359.95906 * 23 10 9 37 37 H 1.08998 * 117.50400 * 359.97438 * 24 5 2 38 38 H 1.09007 * 117.49842 * 145.02592 * 24 5 2 39 39 H 1.09005 * 117.49678 * 214.98358 * 25 5 2 40 40 H 1.08998 * 117.49970 * 0.02562 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0400 -0.7212 -1.2493 6 7 3.4953 -0.8529 -1.3530 7 6 4.2737 0.2474 -1.3450 8 8 3.7652 1.3518 -1.3390 9 7 5.6158 0.1234 -1.3438 10 6 6.4236 1.2617 -1.2406 11 6 6.0214 2.4559 -1.8340 12 6 6.8106 3.5895 -1.7340 13 6 8.0076 3.5454 -1.0552 14 6 8.4296 2.3443 -0.4551 15 6 9.6575 2.2913 0.2442 16 1 10.0543 3.1828 0.7069 17 6 10.3584 1.0837 0.3368 18 7 10.0098 0.0663 -0.4081 19 14 11.7920 0.9245 1.5239 20 1 11.3171 1.1708 2.9092 21 1 12.3609 -0.4441 1.4321 22 1 12.8370 1.9200 1.1744 23 6 7.6221 1.1974 -0.5548 24 6 1.2539 -0.5271 -2.5474 25 6 1.1861 -1.8633 -1.8037 26 1 -0.3634 -1.0276 0.0112 27 1 -0.3633 0.5041 -0.8956 28 1 -0.3633 0.5235 0.8842 29 1 1.7210 -1.5952 1.2328 30 1 3.8988 -1.7318 -1.4274 31 1 6.0218 -0.7546 -1.4144 32 1 5.0859 2.4992 -2.3720 33 1 6.4877 4.5114 -2.1946 34 1 8.6215 4.4310 -0.9830 35 1 10.4955 -0.7710 -0.3437 36 1 7.9366 0.2709 -0.0976 37 1 0.3732 0.1141 -2.5115 38 1 1.8195 -0.4978 -3.4788 39 1 1.7072 -2.7125 -2.2460 40 1 0.2608 -2.1006 -1.2787 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596926604.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:07 Heat of formation + Delta-G solvation = -50.881938 kcal Electronic energy + Delta-G solvation = -22929.944434 eV Core-core repulsion = 19516.467635 eV Total energy + Delta-G solvation = -3413.476799 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.62999 -40.07233 -38.78575 -36.75743 -35.88682 -35.13040 -33.89290 -31.41144 -30.90697 -29.91967 -27.14449 -25.41672 -23.77856 -23.26510 -22.99074 -21.65449 -20.76210 -19.54736 -19.15720 -18.35958 -17.45972 -16.81819 -16.46998 -16.39158 -16.30111 -16.06937 -15.76976 -15.51151 -14.81836 -14.59839 -14.17831 -14.06043 -13.50783 -13.34152 -13.20731 -13.01700 -12.80068 -12.65264 -12.47121 -12.36158 -12.07747 -11.89307 -11.83448 -11.58163 -11.46421 -11.21676 -11.08856 -10.94656 -10.61338 -9.87983 -9.27576 -8.79974 -8.48266 -6.35183 0.92164 1.07795 1.40707 1.51427 1.55234 1.60135 2.18981 2.24478 2.71992 2.81612 3.17650 3.41902 3.63909 3.73338 3.83849 4.06365 4.24731 4.29680 4.46566 4.54243 4.74499 4.78725 4.85726 4.88812 4.92831 5.11695 5.16094 5.18649 5.21119 5.21875 5.29209 5.37535 5.58340 5.76958 5.83506 6.02527 6.11761 6.18424 6.40427 6.70150 6.88908 6.96251 6.99144 7.11342 7.61477 8.39400 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023366 B = 0.003749 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.011802 B = 7466.419623 C = 7928.961928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.128 3.872 3 H 0.067 0.933 4 O -0.574 6.574 5 C 0.062 3.938 6 N -0.696 5.696 7 C 0.702 3.298 8 O -0.607 6.607 9 N -0.675 5.675 10 C 0.166 3.834 11 C -0.237 4.237 12 C -0.088 4.088 13 C -0.247 4.247 14 C 0.092 3.908 15 C -0.501 4.501 16 H 0.075 0.925 17 C 0.036 3.964 18 N -0.829 5.829 19 Si 0.984 3.016 20 H -0.264 1.264 21 H -0.266 1.266 22 H -0.261 1.261 23 C -0.200 4.200 24 C -0.181 4.181 25 C -0.132 4.132 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.386 0.614 30 H 0.410 0.590 31 H 0.411 0.589 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.287 0.713 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.086 0.914 39 H 0.115 0.885 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.995 -10.365 -1.630 19.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.068 3.932 3 H 0.085 0.915 4 O -0.382 6.382 5 C -0.026 4.026 6 N -0.351 5.351 7 C 0.403 3.597 8 O -0.486 6.486 9 N -0.322 5.322 10 C 0.072 3.928 11 C -0.258 4.258 12 C -0.107 4.107 13 C -0.267 4.267 14 C 0.089 3.911 15 C -0.531 4.531 16 H 0.093 0.907 17 C -0.178 4.178 18 N -0.455 5.455 19 Si 0.804 3.196 20 H -0.188 1.188 21 H -0.190 1.190 22 H -0.185 1.185 23 C -0.222 4.222 24 C -0.220 4.220 25 C -0.169 4.169 26 H 0.111 0.889 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.235 0.765 30 H 0.247 0.753 31 H 0.247 0.753 32 H 0.126 0.874 33 H 0.137 0.863 34 H 0.120 0.880 35 H 0.098 0.902 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.104 0.896 39 H 0.133 0.867 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.152 -9.089 -1.558 18.599 hybrid contribution 1.133 -1.037 0.086 1.538 sum -15.020 -10.126 -1.472 18.174 Atomic orbital electron populations 1.22547 0.92819 1.04510 1.03425 1.21489 0.94454 0.95186 0.82054 0.91493 1.86657 1.78011 1.30025 1.43460 1.21382 0.78137 1.06808 0.96318 1.44161 1.05084 1.07101 1.78755 1.16100 0.81079 0.85095 0.77457 1.90842 1.73653 1.26045 1.58050 1.42439 1.04188 1.09258 1.76343 1.17487 0.91011 0.86759 0.97502 1.20666 1.02121 0.93481 1.09557 1.20748 0.94125 0.97284 0.98494 1.21244 0.99397 0.98793 1.07244 1.17753 0.92372 0.91251 0.89724 1.19765 1.04808 0.96619 1.31893 0.90652 1.26689 1.01044 0.94274 0.95799 1.69832 1.39067 1.03722 1.32909 0.85235 0.77224 0.78519 0.78575 1.18828 1.18996 1.18540 1.21039 0.94684 1.00777 1.05671 1.23511 1.02452 1.01009 0.95014 1.23620 1.00936 0.91568 1.00820 0.88902 0.90372 0.91807 0.76490 0.75312 0.75339 0.87377 0.86330 0.88016 0.90242 0.86786 0.86780 0.89575 0.86653 0.84487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.71 8.60 71.98 0.62 -2.09 16 2 C 0.13 3.18 3.56 30.60 0.11 3.29 16 3 H 0.07 2.38 6.80 -2.39 -0.02 2.36 16 4 O -0.57 -14.82 13.31 -148.98 -1.98 -16.81 16 5 C 0.06 1.34 2.05 3.60 0.01 1.35 16 6 N -0.70 -18.51 5.46 -438.02 -2.39 -20.90 16 7 C 0.70 26.93 8.21 179.05 1.47 28.40 16 8 O -0.61 -27.98 12.34 -3.99 -0.05 -28.03 16 9 N -0.68 -27.23 5.34 -317.33 -1.69 -28.92 16 10 C 0.17 8.31 6.29 38.09 0.24 8.55 16 11 C -0.24 -11.99 8.71 22.58 0.20 -11.79 16 12 C -0.09 -4.32 10.01 22.20 0.22 -4.09 16 13 C -0.25 -12.96 9.79 22.75 0.22 -12.74 16 14 C 0.09 5.18 5.56 -21.31 -0.12 5.07 16 15 C -0.50 -27.73 9.06 23.46 0.21 -27.52 16 16 H 0.08 4.02 7.87 -2.91 -0.02 4.00 16 17 C 0.04 1.82 5.24 85.25 0.45 2.27 16 18 N -0.83 -42.87 10.83 21.82 0.24 -42.64 16 19 Si 0.98 38.63 29.58 68.60 2.03 40.65 16 20 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 21 H -0.27 -9.74 7.11 99.48 0.71 -9.04 16 22 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 23 C -0.20 -10.83 8.58 22.85 0.20 -10.64 16 24 C -0.18 -3.31 9.78 30.62 0.30 -3.01 16 25 C -0.13 -1.53 9.75 30.62 0.30 -1.23 16 26 H 0.09 0.83 6.33 -2.38 -0.02 0.81 16 27 H 0.08 1.10 6.30 -2.39 -0.02 1.09 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.39 5.91 9.04 -74.06 -0.67 5.24 16 30 H 0.41 8.22 8.84 -92.71 -0.82 7.40 16 31 H 0.41 13.92 8.83 -92.71 -0.82 13.10 16 32 H 0.11 5.46 6.18 -2.91 -0.02 5.44 16 33 H 0.12 5.02 8.06 -2.91 -0.02 5.00 16 34 H 0.10 4.99 8.06 -2.91 -0.02 4.96 16 35 H 0.29 13.37 8.30 -92.70 -0.77 12.60 16 36 H 0.11 6.29 6.17 -2.91 -0.02 6.27 16 37 H 0.11 1.82 6.33 -2.39 -0.02 1.81 16 38 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.12 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.14 0.84 6.16 -2.39 -0.01 0.83 16 Total: -1.00 -73.30 331.07 -0.63 -73.93 By element: Atomic # 1 Polarization: 48.10 SS G_CDS: -1.20 Total: 46.90 kcal Atomic # 6 Polarization: -28.61 SS G_CDS: 4.42 Total: -24.19 kcal Atomic # 7 Polarization: -88.61 SS G_CDS: -3.85 Total: -92.46 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: -2.03 Total: -44.84 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.65 kcal Total: -73.30 -0.63 -73.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596926604.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.044 kcal (2) G-P(sol) polarization free energy of solvation -73.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds