Wall clock time and date at job start Tue Mar 31 2020 06:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47128 * 2 1 4 4 C 1.50699 * 109.47232 * 119.99995 * 2 1 3 5 5 H 1.08000 * 120.00111 * 119.99755 * 4 2 1 6 6 C 1.37880 * 119.99879 * 300.00030 * 4 2 1 7 7 N 1.31512 * 119.99997 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99922 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46801 * 179.97438 * 8 6 4 10 10 H 1.48491 * 109.46958 * 299.99770 * 8 6 4 11 11 H 1.48499 * 109.47030 * 59.99607 * 8 6 4 12 12 N 1.46503 * 109.47061 * 239.99970 * 2 1 3 13 13 C 1.46503 * 119.99856 * 300.00077 * 12 2 1 14 14 C 1.34777 * 120.00072 * 120.00215 * 12 2 1 15 15 O 1.21593 * 119.99656 * 359.97438 * 14 12 2 16 16 N 1.34770 * 119.99974 * 180.02562 * 14 12 2 17 17 C 1.40167 * 120.00201 * 175.53132 * 16 14 12 18 18 C 1.38521 * 119.93963 * 34.72928 * 17 16 14 19 19 C 1.38197 * 120.27605 * 179.81574 * 18 17 16 20 20 C 1.38370 * 119.82028 * 0.39967 * 19 18 17 21 21 C 1.37854 * 120.11041 * 359.67681 * 20 19 18 22 22 C 1.38713 * 120.82285 * 0.30302 * 21 20 19 23 23 O 1.36214 * 111.26766 * 179.29772 * 22 21 20 24 24 C 1.43780 * 109.23274 * 18.84561 * 23 22 21 25 25 C 1.51648 * 132.11890 * 180.54525 * 21 20 19 26 26 H 1.08997 * 109.47444 * 59.99678 * 1 2 3 27 27 H 1.08994 * 109.47701 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47251 * 300.00243 * 1 2 3 29 29 H 0.97004 * 119.99777 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.46697 * 89.99852 * 13 12 2 31 31 H 1.08996 * 109.47056 * 210.00137 * 13 12 2 32 32 H 1.08999 * 109.46975 * 330.00156 * 13 12 2 33 33 H 0.97009 * 119.99994 * 355.53345 * 16 14 12 34 34 H 1.08003 * 119.86078 * 0.06915 * 18 17 16 35 35 H 1.07998 * 120.09039 * 180.10044 * 19 18 17 36 36 H 1.08005 * 119.94863 * 179.70264 * 20 19 18 37 37 H 1.09002 * 110.75286 * 90.68051 * 24 23 22 38 38 H 1.09000 * 110.74911 * 213.85783 * 24 23 22 39 39 H 1.08999 * 110.94041 * 46.12043 * 25 21 20 40 40 H 1.09004 * 110.97102 * 282.44721 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 1.8269 -0.4198 5.2204 10 1 1.8258 -2.5201 4.0078 11 1 3.8063 -1.1210 4.0081 12 7 2.0183 -0.6906 -1.1962 13 6 1.6643 -2.0932 -1.4280 14 6 2.7932 -0.0357 -2.0834 15 8 3.0865 1.1286 -1.8911 16 7 3.2420 -0.6709 -3.1840 17 6 3.9689 0.0345 -4.1529 18 6 4.8253 1.0533 -3.7688 19 6 5.5482 1.7507 -4.7179 20 6 5.4091 1.4349 -6.0579 21 6 4.5569 0.4229 -6.4450 22 6 3.8241 -0.2876 -5.5056 23 8 3.0378 -1.2276 -6.1002 24 6 3.5291 -1.4859 -7.4266 25 6 4.2087 -0.1488 -7.8058 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 0.7089 1.1614 3.4844 30 1 0.7374 -2.1443 -1.9993 31 1 2.4627 -2.5819 -1.9863 32 1 1.5294 -2.5968 -0.4708 33 1 3.0619 -1.6163 -3.3057 34 1 4.9315 1.3008 -2.7229 35 1 6.2162 2.5434 -4.4150 36 1 5.9694 1.9818 -6.8018 37 1 4.2548 -2.2992 -7.4181 38 1 2.7070 -1.7108 -8.1059 39 1 5.1078 -0.3228 -8.3969 40 1 3.5155 0.5034 -8.3372 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599844236.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:47 Heat of formation + Delta-G solvation = -18.837961 kcal Electronic energy + Delta-G solvation = -23179.313093 eV Core-core repulsion = 19767.225825 eV Total energy + Delta-G solvation = -3412.087268 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.18187 -39.65817 -37.32724 -35.50458 -34.44682 -32.86258 -31.87440 -29.73685 -29.23536 -28.23973 -26.10864 -25.19692 -23.63062 -22.42562 -22.17782 -20.67799 -19.06726 -17.96652 -17.28136 -16.84772 -16.26829 -16.17796 -15.77484 -15.18181 -14.74616 -14.67477 -14.12839 -13.49964 -13.30831 -13.11600 -13.08023 -12.71981 -12.51004 -12.40303 -11.92386 -11.76459 -11.61612 -11.50908 -11.25661 -11.03513 -10.89256 -10.83783 -10.65990 -10.26718 -10.14911 -9.97668 -9.31230 -9.09847 -8.41775 -8.28044 -7.82631 -7.45379 -6.05636 -4.13712 1.40734 1.43978 3.18012 3.25682 3.29062 3.34260 3.37114 3.65012 4.01826 4.32252 4.37132 4.49613 4.57851 4.79917 4.98764 5.23735 5.25211 5.25594 5.37006 5.52549 5.60757 5.65201 5.69979 5.92935 6.01035 6.24676 6.32040 6.35585 6.60985 6.72841 6.74318 6.83563 6.87151 7.05246 7.19053 7.35874 7.49442 7.70022 7.85151 8.08960 8.23116 8.66092 8.86939 9.23579 9.53155 10.99576 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028699 B = 0.003781 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.420727 B = 7403.208688 C = 7809.392850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.272 3.728 3 H 0.065 0.935 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.603 5.603 13 C 0.085 3.915 14 C 0.698 3.302 15 O -0.581 6.581 16 N -0.692 5.692 17 C 0.168 3.832 18 C -0.090 4.090 19 C -0.127 4.127 20 C -0.097 4.097 21 C -0.161 4.161 22 C 0.064 3.936 23 O -0.303 6.303 24 C 0.051 3.949 25 C -0.106 4.106 26 H 0.011 0.989 27 H 0.029 0.971 28 H 0.094 0.906 29 H 0.264 0.736 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.085 0.915 33 H 0.404 0.596 34 H 0.154 0.846 35 H 0.130 0.870 36 H 0.121 0.879 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.188 -4.734 -19.063 20.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.172 3.828 3 H 0.083 0.917 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.212 1.212 10 H -0.203 1.203 11 H -0.203 1.203 12 N -0.337 5.337 13 C -0.059 4.059 14 C 0.400 3.600 15 O -0.459 6.459 16 N -0.342 5.342 17 C 0.071 3.929 18 C -0.110 4.110 19 C -0.146 4.146 20 C -0.117 4.117 21 C -0.162 4.162 22 C 0.017 3.983 23 O -0.218 6.218 24 C -0.024 4.024 25 C -0.143 4.143 26 H 0.030 0.970 27 H 0.048 0.952 28 H 0.112 0.888 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.241 0.759 34 H 0.172 0.828 35 H 0.148 0.852 36 H 0.139 0.861 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.107 0.893 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.011 -3.922 -18.568 19.907 hybrid contribution 0.202 -1.043 0.601 1.220 sum 6.213 -4.965 -17.967 19.649 Atomic orbital electron populations 1.22097 0.98192 0.99402 1.00825 1.18895 0.90694 0.94340 0.78839 0.91678 1.21299 1.31909 1.13084 0.90314 0.92306 1.24882 0.94943 0.94984 0.98903 1.69874 1.36259 1.22529 1.23866 0.86545 0.79225 0.79539 0.81996 1.21171 1.20267 1.20261 1.47599 1.50775 1.11553 1.23782 1.21543 0.98398 0.83467 1.02541 1.15980 0.79563 0.84907 0.79590 1.90845 1.62867 1.15515 1.76699 1.42892 1.57476 1.12849 1.20936 1.16904 0.95205 0.97369 0.83404 1.21284 0.93142 0.94500 1.02082 1.20966 1.00783 1.00691 0.92112 1.20218 0.98498 0.96832 0.96103 1.20487 1.01809 0.99841 0.94095 1.19289 0.94780 0.92750 0.91494 1.86856 1.49463 1.56922 1.28524 1.23788 0.99176 0.97056 0.82403 1.21747 1.01465 0.96090 0.95006 0.96978 0.95186 0.88756 0.92614 0.93783 0.93582 0.89630 0.75917 0.82807 0.85249 0.86097 0.90832 0.87882 0.89305 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 8.97 37.16 0.33 -3.24 16 2 C 0.27 7.07 2.64 -69.08 -0.18 6.89 16 3 H 0.07 1.95 6.90 -51.93 -0.36 1.59 16 4 C -0.53 -14.29 7.99 -34.44 -0.28 -14.56 16 5 H 0.06 1.56 7.33 -52.49 -0.38 1.18 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.16 11.32 55.43 0.63 -24.53 16 8 Si 0.90 21.05 29.54 -169.99 -5.02 16.02 16 9 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.60 -13.30 2.75 -181.01 -0.50 -13.80 16 13 C 0.08 1.47 9.24 59.85 0.55 2.02 16 14 C 0.70 15.39 8.12 -86.92 -0.71 14.68 16 15 O -0.58 -14.72 13.08 5.28 0.07 -14.65 16 16 N -0.69 -12.40 5.23 -14.02 -0.07 -12.48 16 17 C 0.17 2.87 6.33 -83.35 -0.53 2.35 16 18 C -0.09 -1.51 8.67 -39.49 -0.34 -1.85 16 19 C -0.13 -1.71 10.06 -39.55 -0.40 -2.11 16 20 C -0.10 -1.17 10.03 -39.67 -0.40 -1.56 16 21 C -0.16 -2.02 6.27 -104.12 -0.65 -2.67 16 22 C 0.06 0.96 6.95 -38.82 -0.27 0.69 16 23 O -0.30 -4.14 11.11 -20.42 -0.23 -4.37 16 24 C 0.05 0.45 8.01 38.05 0.30 0.76 16 25 C -0.11 -0.93 7.12 -26.52 -0.19 -1.11 16 26 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 28 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.65 6.30 -51.93 -0.33 0.33 16 32 H 0.09 1.55 7.02 -51.93 -0.36 1.18 16 33 H 0.40 6.22 6.52 -40.82 -0.27 5.96 16 34 H 0.15 2.94 6.18 -52.48 -0.32 2.62 16 35 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 327.31 15.07 4.93 4.93 Total: -1.00 -32.21 327.31 -8.29 -40.50 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -5.26 Total: 6.41 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -2.84 Total: 1.96 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.06 Total: -50.81 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.16 Total: -19.02 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.21 -8.29 -40.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599844236.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.658 kcal (2) G-P(sol) polarization free energy of solvation -32.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds