Wall clock time and date at job start Tue Mar 31 2020 06:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47128 * 2 1 4 4 C 1.50699 * 109.47232 * 119.99995 * 2 1 3 5 5 H 1.08000 * 120.00111 * 119.99755 * 4 2 1 6 6 C 1.37880 * 119.99879 * 300.00030 * 4 2 1 7 7 N 1.31512 * 119.99997 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99922 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46801 * 179.97438 * 8 6 4 10 10 H 1.48491 * 109.46958 * 299.99770 * 8 6 4 11 11 H 1.48499 * 109.47030 * 59.99607 * 8 6 4 12 12 N 1.46503 * 109.47061 * 239.99970 * 2 1 3 13 13 C 1.46503 * 119.99856 * 300.00077 * 12 2 1 14 14 C 1.34777 * 120.00072 * 120.00215 * 12 2 1 15 15 O 1.21593 * 119.99656 * 359.97438 * 14 12 2 16 16 N 1.34770 * 119.99974 * 180.02562 * 14 12 2 17 17 C 1.40167 * 120.00201 * 175.53132 * 16 14 12 18 18 C 1.38521 * 119.93963 * 34.72928 * 17 16 14 19 19 C 1.38197 * 120.27605 * 179.81574 * 18 17 16 20 20 C 1.38370 * 119.82028 * 0.39967 * 19 18 17 21 21 C 1.37854 * 120.11041 * 359.67681 * 20 19 18 22 22 C 1.38713 * 120.82285 * 0.30302 * 21 20 19 23 23 O 1.36214 * 111.26766 * 179.29772 * 22 21 20 24 24 C 1.43780 * 109.23274 * 18.84561 * 23 22 21 25 25 C 1.51648 * 132.11890 * 180.54525 * 21 20 19 26 26 H 1.08997 * 109.47444 * 59.99678 * 1 2 3 27 27 H 1.08994 * 109.47701 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47251 * 300.00243 * 1 2 3 29 29 H 0.97004 * 119.99777 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.46697 * 89.99852 * 13 12 2 31 31 H 1.08996 * 109.47056 * 210.00137 * 13 12 2 32 32 H 1.08999 * 109.46975 * 330.00156 * 13 12 2 33 33 H 0.97009 * 119.99994 * 355.53345 * 16 14 12 34 34 H 1.08003 * 119.86078 * 0.06915 * 18 17 16 35 35 H 1.07998 * 120.09039 * 180.10044 * 19 18 17 36 36 H 1.08005 * 119.94863 * 179.70264 * 20 19 18 37 37 H 1.09002 * 110.75286 * 90.68051 * 24 23 22 38 38 H 1.09000 * 110.74911 * 213.85783 * 24 23 22 39 39 H 1.08999 * 110.94041 * 46.12043 * 25 21 20 40 40 H 1.09004 * 110.97102 * 282.44721 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 1.8269 -0.4198 5.2204 10 1 1.8258 -2.5201 4.0078 11 1 3.8063 -1.1210 4.0081 12 7 2.0183 -0.6906 -1.1962 13 6 1.6643 -2.0932 -1.4280 14 6 2.7932 -0.0357 -2.0834 15 8 3.0865 1.1286 -1.8911 16 7 3.2420 -0.6709 -3.1840 17 6 3.9689 0.0345 -4.1529 18 6 4.8253 1.0533 -3.7688 19 6 5.5482 1.7507 -4.7179 20 6 5.4091 1.4349 -6.0579 21 6 4.5569 0.4229 -6.4450 22 6 3.8241 -0.2876 -5.5056 23 8 3.0378 -1.2276 -6.1002 24 6 3.5291 -1.4859 -7.4266 25 6 4.2087 -0.1488 -7.8058 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 0.7089 1.1614 3.4844 30 1 0.7374 -2.1443 -1.9993 31 1 2.4627 -2.5819 -1.9863 32 1 1.5294 -2.5968 -0.4708 33 1 3.0619 -1.6163 -3.3057 34 1 4.9315 1.3008 -2.7229 35 1 6.2162 2.5434 -4.4150 36 1 5.9694 1.9818 -6.8018 37 1 4.2548 -2.2992 -7.4181 38 1 2.7070 -1.7108 -8.1059 39 1 5.1078 -0.3228 -8.3969 40 1 3.5155 0.5034 -8.3372 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599844236.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:47 Heat of formation + Delta-G solvation = -39.417361 kcal Electronic energy + Delta-G solvation = -23180.205483 eV Core-core repulsion = 19767.225825 eV Total energy + Delta-G solvation = -3412.979658 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.25580 -41.16862 -38.52100 -37.20210 -35.96040 -34.73668 -32.92663 -31.40720 -30.30998 -29.50706 -27.66138 -27.30008 -24.66821 -23.71505 -23.26823 -22.15950 -20.66042 -19.44505 -18.56061 -18.24745 -17.93819 -17.26222 -16.96782 -16.75032 -16.39766 -16.04434 -15.62233 -15.00158 -14.58436 -14.42683 -14.25971 -13.94366 -13.88203 -13.63984 -13.55419 -13.16538 -12.90199 -12.75371 -12.73492 -12.64415 -12.61761 -12.27287 -12.17372 -12.10287 -11.75889 -11.36537 -11.23692 -10.91034 -10.51448 -9.53346 -9.28026 -8.81279 -8.13763 -6.30766 0.29994 0.34497 1.42220 1.44828 1.52135 1.71351 2.11713 2.31860 2.42686 2.77104 3.03218 3.13941 3.52885 3.74273 4.08846 4.19793 4.24352 4.31136 4.42662 4.46683 4.63778 4.64483 4.70085 4.83608 4.88074 4.92793 4.94901 4.98212 5.04689 5.15459 5.30904 5.42335 5.50619 5.54164 5.58367 5.66577 5.72923 5.94454 6.14061 6.21709 6.25449 6.75881 7.02934 7.35861 7.59135 8.90441 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028699 B = 0.003781 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.420727 B = 7403.208688 C = 7809.392850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.278 3.722 3 H 0.011 0.989 4 C -0.541 4.541 5 H 0.061 0.939 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.967 3.033 9 H -0.283 1.283 10 H -0.262 1.262 11 H -0.278 1.278 12 N -0.611 5.611 13 C 0.082 3.918 14 C 0.691 3.309 15 O -0.625 6.625 16 N -0.676 5.676 17 C 0.129 3.871 18 C -0.117 4.117 19 C -0.129 4.129 20 C -0.086 4.086 21 C -0.160 4.160 22 C 0.058 3.942 23 O -0.324 6.324 24 C 0.042 3.958 25 C -0.099 4.099 26 H 0.016 0.984 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.265 0.735 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.415 0.585 34 H 0.118 0.882 35 H 0.150 0.850 36 H 0.161 0.839 37 H 0.090 0.910 38 H 0.129 0.871 39 H 0.120 0.880 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.004 -6.439 -21.764 23.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.176 3.824 3 H 0.029 0.971 4 C -0.579 4.579 5 H 0.079 0.921 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.792 3.208 9 H -0.208 1.208 10 H -0.186 1.186 11 H -0.203 1.203 12 N -0.345 5.345 13 C -0.061 4.061 14 C 0.393 3.607 15 O -0.506 6.506 16 N -0.327 5.327 17 C 0.034 3.966 18 C -0.137 4.137 19 C -0.147 4.147 20 C -0.104 4.104 21 C -0.162 4.162 22 C 0.011 3.989 23 O -0.239 6.239 24 C -0.032 4.032 25 C -0.136 4.136 26 H 0.035 0.965 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.254 0.746 34 H 0.136 0.864 35 H 0.167 0.833 36 H 0.179 0.821 37 H 0.108 0.892 38 H 0.147 0.853 39 H 0.138 0.862 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.835 -5.683 -21.332 23.110 hybrid contribution -0.004 -0.487 1.267 1.358 sum 6.831 -6.170 -20.065 22.075 Atomic orbital electron populations 1.21882 0.97113 1.00140 0.99861 1.18488 0.91419 0.92039 0.80430 0.97071 1.21544 1.32096 1.13221 0.91054 0.92057 1.25735 0.95011 0.95629 1.01968 1.70019 1.37185 1.23805 1.24554 0.85481 0.78340 0.78978 0.78028 1.20834 1.18645 1.20348 1.47477 1.50911 1.13278 1.22856 1.21765 1.00531 0.80761 1.03001 1.16159 0.79489 0.84541 0.80466 1.90810 1.64328 1.17631 1.77872 1.42576 1.57003 1.13195 1.19903 1.17163 0.96483 0.98639 0.84328 1.21132 0.95238 0.96146 1.01204 1.21230 1.00375 1.00589 0.92537 1.20638 0.97681 0.96181 0.95905 1.21074 1.00395 0.98964 0.95727 1.19375 0.95135 0.93512 0.90888 1.86830 1.49802 1.56539 1.30704 1.24191 1.00722 0.97775 0.80494 1.21879 1.03051 0.95635 0.93016 0.96500 0.93392 0.91068 0.92563 0.91835 0.90442 0.90243 0.74639 0.86441 0.83253 0.82122 0.89232 0.85327 0.86181 0.88053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.59 8.97 71.98 0.65 -5.94 16 2 C 0.28 15.09 2.64 44.24 0.12 15.21 16 3 H 0.01 0.73 6.90 -2.39 -0.02 0.71 16 4 C -0.54 -30.02 7.99 25.60 0.20 -29.81 16 5 H 0.06 3.29 7.33 -2.91 -0.02 3.27 16 6 C 0.02 0.91 5.30 84.66 0.45 1.35 16 7 N -0.92 -53.58 11.32 21.45 0.24 -53.34 16 8 Si 0.97 43.51 29.54 68.60 2.03 45.54 16 9 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 10 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 N -0.61 -27.81 2.75 -844.84 -2.33 -30.14 16 13 C 0.08 2.78 9.24 127.77 1.18 3.96 16 14 C 0.69 32.06 8.12 179.06 1.45 33.51 16 15 O -0.63 -34.15 13.08 -4.01 -0.05 -34.20 16 16 N -0.68 -24.97 5.23 -316.54 -1.65 -26.62 16 17 C 0.13 4.53 6.33 38.25 0.24 4.78 16 18 C -0.12 -4.14 8.67 22.33 0.19 -3.94 16 19 C -0.13 -3.40 10.06 22.29 0.22 -3.17 16 20 C -0.09 -1.80 10.03 22.21 0.22 -1.57 16 21 C -0.16 -3.55 6.27 -19.54 -0.12 -3.67 16 22 C 0.06 1.68 6.95 22.76 0.16 1.84 16 23 O -0.32 -8.19 11.11 -96.00 -1.07 -9.25 16 24 C 0.04 0.59 8.01 72.56 0.58 1.17 16 25 C -0.10 -1.28 7.12 30.73 0.22 -1.06 16 26 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.05 2.17 7.67 -2.39 -0.02 2.15 16 28 H 0.07 3.91 6.07 -2.39 -0.01 3.90 16 29 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.08 2.10 6.30 -2.39 -0.02 2.09 16 32 H 0.08 2.81 7.02 -2.39 -0.02 2.79 16 33 H 0.41 12.75 6.52 -92.70 -0.60 12.15 16 34 H 0.12 4.97 6.18 -2.91 -0.02 4.96 16 35 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 36 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 37 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -74.90 327.31 3.40 -71.49 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.46 Total: 23.88 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 5.77 Total: 12.64 kcal Atomic # 7 Polarization: -106.36 SS G_CDS: -3.74 Total: -110.09 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: -1.12 Total: -43.45 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -74.90 3.40 -71.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599844236.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.077 kcal (2) G-P(sol) polarization free energy of solvation -74.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds