Wall clock time and date at job start Tue Mar 31 2020 06:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46896 * 110.99938 * 183.95522 * 12 2 1 14 14 C 1.46898 * 110.99849 * 60.00056 * 12 2 1 15 15 C 1.50705 * 109.46881 * 190.00038 * 14 12 2 16 16 C 1.38414 * 119.90736 * 90.00226 * 15 14 12 17 17 C 1.38123 * 120.31208 * 179.97438 * 16 15 14 18 18 C 1.38610 * 119.91687 * 0.02562 * 17 16 15 19 19 O 1.35553 * 133.00119 * 179.97438 * 18 17 16 20 20 C 1.34224 * 109.18425 * 180.02562 * 19 18 17 21 21 O 1.21603 * 125.27593 * 180.02562 * 20 19 18 22 22 N 1.34783 * 109.44934 * 359.97438 * 20 19 18 23 23 C 1.46497 * 126.25434 * 180.02562 * 22 20 19 24 24 C 1.39461 * 107.49138 * 0.02562 * 22 20 19 25 25 C 1.38128 * 119.90644 * 269.72753 * 15 14 12 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 28 28 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47187 * 59.99958 * 13 12 2 31 31 H 1.08996 * 109.47272 * 180.02562 * 13 12 2 32 32 H 1.09005 * 109.47145 * 299.99616 * 13 12 2 33 33 H 1.09005 * 109.47168 * 309.99661 * 14 12 2 34 34 H 1.08999 * 109.47122 * 70.00053 * 14 12 2 35 35 H 1.08000 * 119.83873 * 359.97438 * 16 15 14 36 36 H 1.07997 * 120.03905 * 180.02562 * 17 16 15 37 37 H 1.08998 * 109.47374 * 269.98185 * 23 22 20 38 38 H 1.09005 * 109.46799 * 29.98042 * 23 22 20 39 39 H 1.09002 * 109.47196 * 149.97693 * 23 22 20 40 40 H 1.07999 * 120.08522 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 3.4850 -0.7945 -1.1871 14 6 1.5487 -0.0262 -2.4211 15 6 1.8580 -0.8908 -3.6160 16 6 0.9348 -1.8275 -4.0475 17 6 1.2094 -2.6240 -5.1421 18 6 2.4149 -2.4863 -5.8122 19 8 2.9503 -3.1110 -6.8895 20 6 4.1653 -2.5977 -7.1382 21 8 4.9034 -2.9453 -8.0399 22 7 4.4400 -1.6364 -6.2343 23 6 5.6654 -0.8365 -6.1655 24 6 3.3445 -1.5424 -5.3764 25 6 3.0596 -0.7425 -4.2809 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 0.7089 1.1611 3.4845 30 1 3.8029 -1.3532 -0.3068 31 1 3.8209 -1.3107 -2.0864 32 1 3.9187 0.2052 -1.1592 33 1 0.4722 0.1326 -2.3564 34 1 2.0519 0.9348 -2.5279 35 1 -0.0047 -1.9360 -3.5259 36 1 0.4857 -3.3532 -5.4752 37 1 6.3933 -1.3407 -5.5298 38 1 6.0785 -0.7179 -7.1673 39 1 5.4363 0.1442 -5.7486 40 1 3.7767 -0.0078 -3.9457 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602464454.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:38 Heat of formation + Delta-G solvation = -1.701553 kcal Electronic energy + Delta-G solvation = -22975.944564 eV Core-core repulsion = 19564.600386 eV Total energy + Delta-G solvation = -3411.344178 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.32829 -39.08565 -37.83217 -36.76289 -35.90721 -33.00721 -31.07118 -30.33116 -29.06807 -28.15875 -26.80340 -24.80333 -23.72259 -22.88470 -21.95947 -21.85651 -19.55463 -18.33160 -17.67693 -17.59841 -16.55666 -16.15198 -15.31618 -15.25405 -14.97257 -14.39833 -14.32394 -14.15940 -14.05451 -13.76424 -13.28306 -13.11805 -12.80051 -12.47591 -12.12360 -12.01685 -11.90683 -11.41059 -11.18340 -11.06548 -10.97163 -10.82034 -10.69522 -10.56937 -10.21062 -10.11346 -9.91369 -8.97967 -8.76154 -8.47857 -8.18244 -7.30095 -6.07479 -4.12233 1.00610 1.09689 1.94680 2.32749 2.73428 3.28238 3.33069 3.35723 3.48297 4.21585 4.36093 4.36734 4.73640 4.95200 5.01268 5.07088 5.12786 5.18448 5.24600 5.26621 5.28403 5.59867 5.71558 5.88773 6.01820 6.10042 6.13087 6.17282 6.27991 6.50313 6.58419 6.69581 6.76311 6.96076 7.05479 7.08221 7.41787 7.48570 7.61699 7.76130 8.09611 8.23284 8.49376 8.93639 9.53148 10.99232 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028716 B = 0.003464 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.842048 B = 8081.767105 C = 8445.155435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.213 3.787 3 H -0.001 1.001 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.288 1.288 10 H -0.276 1.276 11 H -0.278 1.278 12 N -0.530 5.530 13 C 0.034 3.966 14 C 0.083 3.917 15 C -0.035 4.035 16 C -0.085 4.085 17 C -0.078 4.078 18 C 0.022 3.978 19 O -0.238 6.238 20 C 0.634 3.366 21 O -0.498 6.498 22 N -0.549 5.549 23 C 0.101 3.899 24 C 0.065 3.935 25 C -0.096 4.096 26 H 0.036 0.964 27 H 0.086 0.914 28 H 0.009 0.991 29 H 0.261 0.739 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.011 0.989 33 H 0.091 0.909 34 H 0.034 0.966 35 H 0.145 0.855 36 H 0.139 0.861 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.911 -1.159 -14.327 14.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.107 3.893 3 H 0.017 0.983 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.214 1.214 10 H -0.202 1.202 11 H -0.204 1.204 12 N -0.254 5.254 13 C -0.115 4.115 14 C -0.045 4.045 15 C -0.037 4.037 16 C -0.104 4.104 17 C -0.097 4.097 18 C -0.025 4.025 19 O -0.144 6.144 20 C 0.389 3.611 21 O -0.382 6.382 22 N -0.281 5.281 23 C -0.039 4.039 24 C -0.032 4.032 25 C -0.117 4.117 26 H 0.055 0.945 27 H 0.104 0.896 28 H 0.028 0.972 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.030 0.970 33 H 0.109 0.891 34 H 0.052 0.948 35 H 0.163 0.837 36 H 0.157 0.843 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.042 -1.856 -14.834 15.256 hybrid contribution 0.875 0.419 0.863 1.298 sum 3.917 -1.437 -13.971 14.581 Atomic orbital electron populations 1.21881 0.97631 0.99791 0.99982 1.19275 0.92393 0.92007 0.85600 0.98304 1.21100 1.31244 1.12370 0.89675 0.91876 1.24921 0.95151 0.95044 0.99018 1.69874 1.36798 1.22958 1.23615 0.86583 0.79076 0.79810 0.82074 1.21350 1.20169 1.20365 1.62194 1.09468 1.52372 1.01404 1.22288 0.88718 0.99071 1.01383 1.21164 1.02008 0.93123 0.88189 1.19882 0.92189 0.96269 0.95363 1.20922 1.00550 0.94319 0.94645 1.20021 0.93075 1.01286 0.95334 1.18974 0.96769 0.96332 0.90380 1.84949 1.29843 1.56081 1.43481 1.18505 0.80504 0.79358 0.82724 1.91131 1.48622 1.65568 1.32914 1.45652 1.17693 1.36480 1.28312 1.21796 0.82933 0.94837 1.04376 1.18465 0.87943 1.00610 0.96186 1.20005 0.98198 1.00063 0.93475 0.94503 0.89569 0.97206 0.92870 0.90521 0.93661 0.97003 0.89111 0.94753 0.83695 0.84267 0.90743 0.89266 0.89423 0.85079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.76 37.16 0.33 -2.70 16 2 C 0.21 4.98 2.06 -68.87 -0.14 4.83 16 3 H 0.00 -0.02 8.14 -51.93 -0.42 -0.44 16 4 C -0.51 -13.11 7.93 -34.44 -0.27 -13.39 16 5 H 0.06 1.64 6.39 -52.49 -0.34 1.30 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 7 N -0.89 -24.44 11.32 55.43 0.63 -23.81 16 8 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.53 -10.26 4.61 -237.73 -1.10 -11.35 16 13 C 0.03 0.61 8.91 60.06 0.53 1.15 16 14 C 0.08 1.29 4.93 -4.97 -0.02 1.27 16 15 C -0.04 -0.47 4.89 -104.59 -0.51 -0.98 16 16 C -0.09 -1.01 9.68 -39.56 -0.38 -1.40 16 17 C -0.08 -0.89 10.06 -39.49 -0.40 -1.28 16 18 C 0.02 0.28 7.35 -38.98 -0.29 0.00 16 19 O -0.24 -3.43 10.72 -21.95 -0.24 -3.67 16 20 C 0.63 9.25 9.07 54.06 0.49 9.74 16 21 O -0.50 -8.32 17.81 -19.01 -0.34 -8.66 16 22 N -0.55 -6.68 3.21 -126.43 -0.41 -7.09 16 23 C 0.10 0.83 11.06 59.85 0.66 1.49 16 24 C 0.07 0.82 6.84 -83.79 -0.57 0.25 16 25 C -0.10 -1.18 7.89 -39.49 -0.31 -1.49 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.09 2.16 6.07 -51.93 -0.32 1.85 16 28 H 0.01 0.18 6.20 -51.93 -0.32 -0.14 16 29 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.08 1.51 6.23 -51.93 -0.32 1.19 16 31 H 0.04 0.71 5.90 -51.93 -0.31 0.40 16 32 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.09 1.40 5.77 -51.93 -0.30 1.10 16 34 H 0.03 0.53 8.06 -51.93 -0.42 0.11 16 35 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.67 8.06 -51.93 -0.42 0.25 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.13 1.44 8.00 -52.49 -0.42 1.02 16 LS Contribution 329.10 15.07 4.96 4.96 Total: -1.00 -29.82 329.10 -7.75 -37.56 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -5.25 Total: -2.50 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -0.98 Total: -1.02 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: -0.87 Total: -42.25 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: -0.57 Total: -12.33 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.82 -7.75 -37.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602464454.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.862 kcal (2) G-P(sol) polarization free energy of solvation -29.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds