Wall clock time and date at job start Tue Mar 31 2020 06:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46896 * 110.99938 * 183.95522 * 12 2 1 14 14 C 1.46898 * 110.99849 * 60.00056 * 12 2 1 15 15 C 1.50705 * 109.46881 * 190.00038 * 14 12 2 16 16 C 1.38414 * 119.90736 * 90.00226 * 15 14 12 17 17 C 1.38123 * 120.31208 * 179.97438 * 16 15 14 18 18 C 1.38610 * 119.91687 * 0.02562 * 17 16 15 19 19 O 1.35553 * 133.00119 * 179.97438 * 18 17 16 20 20 C 1.34224 * 109.18425 * 180.02562 * 19 18 17 21 21 O 1.21603 * 125.27593 * 180.02562 * 20 19 18 22 22 N 1.34783 * 109.44934 * 359.97438 * 20 19 18 23 23 C 1.46497 * 126.25434 * 180.02562 * 22 20 19 24 24 C 1.39461 * 107.49138 * 0.02562 * 22 20 19 25 25 C 1.38128 * 119.90644 * 269.72753 * 15 14 12 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 28 28 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47187 * 59.99958 * 13 12 2 31 31 H 1.08996 * 109.47272 * 180.02562 * 13 12 2 32 32 H 1.09005 * 109.47145 * 299.99616 * 13 12 2 33 33 H 1.09005 * 109.47168 * 309.99661 * 14 12 2 34 34 H 1.08999 * 109.47122 * 70.00053 * 14 12 2 35 35 H 1.08000 * 119.83873 * 359.97438 * 16 15 14 36 36 H 1.07997 * 120.03905 * 180.02562 * 17 16 15 37 37 H 1.08998 * 109.47374 * 269.98185 * 23 22 20 38 38 H 1.09005 * 109.46799 * 29.98042 * 23 22 20 39 39 H 1.09002 * 109.47196 * 149.97693 * 23 22 20 40 40 H 1.07999 * 120.08522 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 3.4850 -0.7945 -1.1871 14 6 1.5487 -0.0262 -2.4211 15 6 1.8580 -0.8908 -3.6160 16 6 0.9348 -1.8275 -4.0475 17 6 1.2094 -2.6240 -5.1421 18 6 2.4149 -2.4863 -5.8122 19 8 2.9503 -3.1110 -6.8895 20 6 4.1653 -2.5977 -7.1382 21 8 4.9034 -2.9453 -8.0399 22 7 4.4400 -1.6364 -6.2343 23 6 5.6654 -0.8365 -6.1655 24 6 3.3445 -1.5424 -5.3764 25 6 3.0596 -0.7425 -4.2809 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 0.7089 1.1611 3.4845 30 1 3.8029 -1.3532 -0.3068 31 1 3.8209 -1.3107 -2.0864 32 1 3.9187 0.2052 -1.1592 33 1 0.4722 0.1326 -2.3564 34 1 2.0519 0.9348 -2.5279 35 1 -0.0047 -1.9360 -3.5259 36 1 0.4857 -3.3532 -5.4752 37 1 6.3933 -1.3407 -5.5298 38 1 6.0785 -0.7179 -7.1673 39 1 5.4363 0.1442 -5.7486 40 1 3.7767 -0.0078 -3.9457 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602464454.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:37 Heat of formation + Delta-G solvation = -19.298196 kcal Electronic energy + Delta-G solvation = -22976.707611 eV Core-core repulsion = 19564.600386 eV Total energy + Delta-G solvation = -3412.107226 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.34941 -40.19546 -39.02963 -38.07925 -36.97771 -34.80372 -32.33496 -31.30034 -30.72212 -29.04137 -28.17645 -26.56100 -25.12232 -23.88628 -23.22451 -22.79242 -21.21657 -19.34623 -18.70671 -18.64193 -18.31024 -17.40564 -16.97904 -16.24040 -16.14356 -15.79630 -15.50081 -15.25170 -15.17351 -15.03809 -14.47046 -14.40956 -14.06856 -13.62415 -13.48184 -13.18142 -13.11012 -12.88208 -12.77102 -12.59396 -12.43130 -12.29384 -12.06324 -12.01438 -11.86185 -11.61985 -11.54465 -10.82974 -10.46991 -9.73851 -9.18954 -8.86983 -8.07314 -6.18019 0.03465 0.10760 0.99545 1.25645 1.45745 1.46896 1.53923 1.75115 2.43099 2.52271 3.21777 3.26578 3.52305 3.57259 3.79357 4.03338 4.18059 4.31174 4.37582 4.42017 4.52929 4.60421 4.65783 4.71675 4.77912 4.82578 4.93695 5.04750 5.11095 5.15918 5.18247 5.21100 5.34236 5.53215 5.57539 5.60264 5.77475 5.87075 6.07933 6.33516 6.42677 6.43982 6.77511 6.96822 7.51138 8.97909 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028716 B = 0.003464 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.842048 B = 8081.767105 C = 8445.155435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.217 3.783 3 H -0.033 1.033 4 C -0.518 4.518 5 H 0.058 0.942 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.953 3.047 9 H -0.287 1.287 10 H -0.273 1.273 11 H -0.274 1.274 12 N -0.536 5.536 13 C 0.039 3.961 14 C 0.087 3.913 15 C -0.045 4.045 16 C -0.082 4.082 17 C -0.069 4.069 18 C 0.006 3.994 19 O -0.248 6.248 20 C 0.627 3.373 21 O -0.528 6.528 22 N -0.541 5.541 23 C 0.090 3.910 24 C 0.060 3.940 25 C -0.090 4.090 26 H 0.034 0.966 27 H 0.057 0.943 28 H 0.038 0.962 29 H 0.261 0.739 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.011 0.989 33 H 0.093 0.907 34 H 0.038 0.962 35 H 0.159 0.841 36 H 0.165 0.835 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.007 -1.528 -14.790 15.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.110 3.890 3 H -0.016 1.016 4 C -0.556 4.556 5 H 0.076 0.924 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.779 3.221 9 H -0.212 1.212 10 H -0.198 1.198 11 H -0.199 1.199 12 N -0.260 5.260 13 C -0.109 4.109 14 C -0.040 4.040 15 C -0.047 4.047 16 C -0.101 4.101 17 C -0.088 4.088 18 C -0.040 4.040 19 O -0.153 6.153 20 C 0.382 3.618 21 O -0.415 6.415 22 N -0.273 5.273 23 C -0.048 4.048 24 C -0.037 4.037 25 C -0.111 4.111 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.029 0.971 33 H 0.111 0.889 34 H 0.056 0.944 35 H 0.177 0.823 36 H 0.183 0.817 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.129 0.871 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.146 -2.217 -15.297 15.773 hybrid contribution 0.837 0.548 0.952 1.381 sum 3.983 -1.669 -14.345 14.981 Atomic orbital electron populations 1.21692 0.96980 0.99529 1.00002 1.19051 0.92869 0.90228 0.86810 1.01566 1.21423 1.30975 1.12229 0.91012 0.92359 1.25624 0.95458 0.95727 1.01655 1.69999 1.37801 1.24118 1.23989 0.85686 0.78663 0.78768 0.78945 1.21228 1.19834 1.19886 1.62086 1.10194 1.52262 1.01466 1.22232 0.88054 0.98999 1.01633 1.21133 1.02023 0.93557 0.87319 1.19696 0.93176 0.96823 0.94977 1.21098 1.00778 0.93649 0.94601 1.20274 0.92829 1.01199 0.94471 1.19355 0.97618 0.96666 0.90333 1.84906 1.29988 1.56424 1.44022 1.18608 0.80419 0.79804 0.82940 1.91098 1.49507 1.66683 1.34242 1.45818 1.18430 1.35803 1.27270 1.22151 0.81841 0.95544 1.05297 1.18523 0.88071 1.00711 0.96380 1.20044 0.98081 0.99993 0.93004 0.94716 0.92457 0.94296 0.93031 0.92728 0.90980 0.97059 0.88894 0.94389 0.82332 0.81736 0.89608 0.88730 0.87144 0.83686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.50 8.76 71.98 0.63 -4.87 16 2 C 0.22 10.13 2.06 44.17 0.09 10.22 16 3 H -0.03 -1.73 8.14 -2.39 -0.02 -1.75 16 4 C -0.52 -26.93 7.93 25.60 0.20 -26.73 16 5 H 0.06 3.02 6.39 -2.91 -0.02 3.01 16 6 C 0.01 0.75 5.30 84.66 0.45 1.19 16 7 N -0.92 -50.81 11.32 21.45 0.24 -50.57 16 8 Si 0.95 42.16 29.54 68.60 2.03 44.19 16 9 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 12 N -0.54 -20.06 4.61 -906.04 -4.18 -24.24 16 13 C 0.04 1.36 8.91 127.69 1.14 2.50 16 14 C 0.09 2.54 4.93 85.56 0.42 2.96 16 15 C -0.05 -1.08 4.89 -19.85 -0.10 -1.18 16 16 C -0.08 -1.72 9.68 22.28 0.22 -1.50 16 17 C -0.07 -1.37 10.06 22.33 0.22 -1.15 16 18 C 0.01 0.15 7.35 22.66 0.17 0.32 16 19 O -0.25 -6.89 10.72 8.64 0.09 -6.80 16 20 C 0.63 17.77 9.07 129.79 1.18 18.95 16 21 O -0.53 -17.55 17.81 19.18 0.34 -17.21 16 22 N -0.54 -12.23 3.21 -784.50 -2.52 -14.74 16 23 C 0.09 1.29 11.06 127.77 1.41 2.70 16 24 C 0.06 1.39 6.84 38.31 0.26 1.65 16 25 C -0.09 -1.96 7.89 22.33 0.18 -1.79 16 26 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.06 2.89 6.07 -2.39 -0.01 2.87 16 28 H 0.04 1.45 6.20 -2.38 -0.01 1.43 16 29 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 30 H 0.05 2.12 6.23 -2.39 -0.01 2.11 16 31 H 0.07 2.09 5.90 -2.39 -0.01 2.07 16 32 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 33 H 0.09 2.65 5.77 -2.38 -0.01 2.64 16 34 H 0.04 1.09 8.06 -2.39 -0.02 1.07 16 35 H 0.16 2.89 8.06 -2.91 -0.02 2.86 16 36 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 37 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.09 1.27 8.06 -2.38 -0.02 1.25 16 39 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.15 2.72 8.00 -2.91 -0.02 2.69 16 Total: -1.00 -64.09 329.10 3.53 -60.56 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: 1.05 Total: 5.52 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 6.47 Total: 3.28 kcal Atomic # 7 Polarization: -83.09 SS G_CDS: -6.45 Total: -89.55 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: 0.43 Total: -24.00 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -64.09 3.53 -60.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602464454.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.259 kcal (2) G-P(sol) polarization free energy of solvation -64.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds