Wall clock time and date at job start Tue Mar 31 2020 06:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.47134 * 2 1 4 4 C 1.53003 * 109.46821 * 119.99323 * 2 1 3 5 5 C 1.50700 * 109.47327 * 295.00082 * 4 2 1 6 6 H 1.07992 * 119.99718 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99636 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00421 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99717 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47221 * 59.99965 * 9 7 5 11 11 H 1.48503 * 109.47173 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47360 * 299.99919 * 9 7 5 13 13 C 1.52994 * 109.46796 * 239.99292 * 2 1 3 14 14 N 1.46502 * 109.47242 * 65.00276 * 13 2 1 15 15 C 1.39875 * 119.99993 * 179.97438 * 14 13 2 16 16 C 1.38767 * 120.10768 * 359.97438 * 15 14 13 17 17 C 1.38317 * 120.22387 * 180.02562 * 16 15 14 18 18 C 1.38150 * 120.24653 * 0.02562 * 17 16 15 19 19 C 1.38731 * 119.96708 * 359.97438 * 18 17 16 20 20 C 1.39173 * 120.10310 * 179.97438 * 15 14 13 21 21 O 1.35638 * 132.99423 * 359.67092 * 20 15 14 22 22 C 1.34197 * 109.15298 * 179.88660 * 21 20 15 23 23 O 1.21608 * 125.28961 * 180.16183 * 22 21 20 24 24 N 1.34779 * 109.42084 * 0.40395 * 22 21 20 25 25 C 1.46503 * 126.24759 * 179.77765 * 24 22 21 26 26 H 1.08999 * 109.46934 * 300.00586 * 1 2 3 27 27 H 1.08997 * 109.46928 * 60.00091 * 1 2 3 28 28 H 1.08997 * 109.46954 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46871 * 55.00319 * 4 2 1 30 30 H 1.09000 * 109.46827 * 175.00083 * 4 2 1 31 31 H 0.96997 * 119.99463 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.47635 * 304.99867 * 13 2 1 33 33 H 1.08999 * 109.46888 * 185.00086 * 13 2 1 34 34 H 0.96997 * 119.99761 * 359.97438 * 14 13 2 35 35 H 1.08002 * 119.88753 * 359.97438 * 16 15 14 36 36 H 1.08000 * 119.87520 * 180.02562 * 17 16 15 37 37 H 1.08000 * 120.01931 * 180.02562 * 18 17 16 38 38 H 1.09003 * 109.46836 * 269.97398 * 25 24 22 39 39 H 1.08992 * 109.47299 * 29.97275 * 25 24 22 40 40 H 1.09001 * 109.47163 * 149.97557 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.6413 0.0573 2.4766 6 1 1.0800 0.9743 2.3756 7 6 1.9932 -0.4014 3.7283 8 7 2.6772 -1.5180 3.8513 9 14 1.4996 0.5638 5.2495 10 1 0.0197 0.6705 5.3095 11 1 1.9956 -0.1356 6.4621 12 1 2.0918 1.9242 5.1864 13 6 2.0400 -0.7214 -1.2491 14 7 1.6524 0.0351 -2.4424 15 6 2.0094 -0.4305 -3.7121 16 6 2.7311 -1.6083 -3.8442 17 6 3.0858 -2.0707 -5.0986 18 6 2.7247 -1.3630 -6.2288 19 6 2.0032 -0.1843 -6.1074 20 6 1.6419 0.2862 -4.8472 21 8 0.9483 1.4374 -5.0298 22 6 0.8720 1.7018 -6.3433 23 8 0.3167 2.6655 -6.8349 24 7 1.5019 0.7303 -7.0333 25 6 1.6370 0.6506 -8.4899 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.6054 -1.7197 1.2953 30 1 3.1263 -0.7993 1.2057 31 1 2.9244 -1.8407 4.7319 32 1 1.6054 -1.7199 -1.2950 33 1 3.1263 -0.7996 -1.2055 34 1 1.1483 0.8588 -2.3518 35 1 3.0174 -2.1655 -2.9644 36 1 3.6471 -2.9883 -5.1949 37 1 3.0033 -1.7276 -7.2065 38 1 0.7930 0.0985 -8.9033 39 1 1.6532 1.6567 -8.9089 40 1 2.5651 0.1373 -8.7412 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602576558.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:40 Heat of formation + Delta-G solvation = -27.547500 kcal Electronic energy + Delta-G solvation = -22397.476161 eV Core-core repulsion = 18985.011218 eV Total energy + Delta-G solvation = -3412.464942 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.26364 -39.07809 -37.58983 -37.04419 -35.82687 -33.89044 -32.11511 -30.01075 -29.08338 -28.07320 -26.90864 -25.75187 -23.56702 -23.14275 -22.33729 -21.23914 -19.59243 -18.49035 -17.97329 -17.56725 -16.68429 -16.46279 -15.70271 -15.32843 -15.10131 -14.74064 -14.51993 -14.39454 -14.23303 -13.70119 -13.55076 -12.94472 -12.84709 -12.70957 -12.30999 -12.16352 -12.07115 -11.76178 -11.59037 -11.09559 -11.02689 -10.94781 -10.78227 -10.45510 -10.41877 -10.02159 -9.73779 -9.36407 -9.11318 -8.40429 -8.32725 -7.40714 -6.05453 -4.07347 1.06953 1.20907 1.95729 2.36650 2.74454 3.30352 3.35153 3.36706 3.42701 3.53540 4.32593 4.41745 4.43792 4.80310 4.88370 5.02158 5.11459 5.14599 5.19742 5.30625 5.38724 5.43891 5.58231 5.75493 5.84464 5.92364 6.10943 6.13791 6.28412 6.32510 6.35285 6.46290 6.75780 6.93994 6.97240 7.02783 7.32058 7.52076 7.56502 7.69736 7.72017 7.92825 8.35130 8.97982 9.56754 11.05879 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030241 B = 0.002979 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.684758 B = 9398.000282 C =10172.204151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 H 0.063 0.937 4 C 0.031 3.969 5 C -0.518 4.518 6 H 0.056 0.944 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.123 3.877 14 N -0.731 5.731 15 C 0.277 3.723 16 C -0.198 4.198 17 C -0.042 4.042 18 C -0.176 4.176 19 C 0.118 3.882 20 C -0.061 4.061 21 O -0.233 6.233 22 C 0.634 3.366 23 O -0.499 6.499 24 N -0.551 5.551 25 C 0.102 3.898 26 H 0.065 0.935 27 H 0.030 0.970 28 H 0.047 0.953 29 H 0.019 0.981 30 H 0.018 0.982 31 H 0.261 0.739 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.405 0.595 35 H 0.143 0.857 36 H 0.137 0.863 37 H 0.127 0.873 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.076 -1.977 -22.638 22.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.116 4.116 3 H 0.082 0.918 4 C -0.006 4.006 5 C -0.556 4.556 6 H 0.074 0.926 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C 0.000 4.000 14 N -0.357 5.357 15 C 0.168 3.832 16 C -0.222 4.222 17 C -0.061 4.061 18 C -0.199 4.199 19 C 0.019 3.981 20 C -0.111 4.111 21 O -0.138 6.138 22 C 0.389 3.611 23 O -0.384 6.384 24 N -0.283 5.283 25 C -0.038 4.038 26 H 0.084 0.916 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.240 0.760 35 H 0.161 0.839 36 H 0.154 0.846 37 H 0.145 0.855 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.768 -1.467 -22.475 22.536 hybrid contribution -0.453 0.844 0.821 1.262 sum 0.315 -0.623 -21.653 21.665 Atomic orbital electron populations 1.21738 0.95804 1.01183 1.00370 1.21466 0.95775 0.99944 0.94429 0.91814 1.19071 0.96274 0.95534 0.89721 1.21149 1.35125 1.08440 0.90914 0.92583 1.25000 0.95176 0.95068 0.99120 1.69943 1.38694 1.21140 1.23670 0.86675 0.78917 0.80127 0.82395 1.20251 1.21296 1.20262 1.21777 0.99476 0.95293 0.83497 1.45194 1.59983 1.28139 1.02337 1.16823 0.92605 0.91309 0.82469 1.20558 1.05856 0.96721 0.99082 1.20723 0.96332 0.98391 0.90686 1.19726 1.05868 0.94504 0.99848 1.18248 0.99416 0.93626 0.86793 1.18253 1.08286 0.90542 0.94005 1.84915 1.65199 1.38143 1.25579 1.18522 0.80148 0.83267 0.79139 1.91133 1.48436 1.29600 1.69192 1.45712 1.52113 1.22419 1.08076 1.21762 1.03221 1.04430 0.74391 0.91640 0.95059 0.93364 0.96231 0.96372 0.92906 0.91971 0.91896 0.75985 0.83948 0.84552 0.85497 0.90941 0.89321 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 8.88 37.16 0.33 -2.03 16 2 C -0.10 -1.81 2.37 -90.62 -0.22 -2.02 16 3 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 4 C 0.03 0.75 4.45 -27.88 -0.12 0.63 16 5 C -0.52 -13.89 8.41 -34.44 -0.29 -14.18 16 6 H 0.06 1.47 7.05 -52.49 -0.37 1.10 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -26.00 13.29 55.43 0.74 -25.27 16 9 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 13 C 0.12 1.87 4.31 -4.04 -0.02 1.85 16 14 N -0.73 -10.27 5.47 -58.55 -0.32 -10.59 16 15 C 0.28 3.64 6.66 -83.64 -0.56 3.08 16 16 C -0.20 -2.19 9.31 -39.36 -0.37 -2.55 16 17 C -0.04 -0.37 10.03 -39.58 -0.40 -0.76 16 18 C -0.18 -1.58 10.03 -39.43 -0.40 -1.97 16 19 C 0.12 1.36 6.84 -83.81 -0.57 0.78 16 20 C -0.06 -0.83 7.20 -38.85 -0.28 -1.11 16 21 O -0.23 -3.56 10.72 -22.14 -0.24 -3.80 16 22 C 0.63 9.33 9.07 54.06 0.49 9.82 16 23 O -0.50 -8.48 17.81 -19.01 -0.34 -8.82 16 24 N -0.55 -6.23 3.21 -126.46 -0.41 -6.64 16 25 C 0.10 0.69 11.06 59.85 0.66 1.35 16 26 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 27 H 0.03 0.48 7.18 -51.93 -0.37 0.10 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.06 0.92 7.95 -51.93 -0.41 0.51 16 33 H 0.06 0.95 7.95 -51.93 -0.41 0.54 16 34 H 0.40 5.76 7.67 -40.82 -0.31 5.45 16 35 H 0.14 1.48 6.73 -52.49 -0.35 1.13 16 36 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 0.58 8.06 -51.93 -0.42 0.16 16 40 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 338.26 15.07 5.10 5.10 Total: -1.00 -31.45 338.26 -7.85 -39.31 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -5.53 Total: 0.16 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -1.83 Total: -5.61 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.01 Total: -42.50 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -0.58 Total: -12.61 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.45 -7.85 -39.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602576558.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.758 kcal (2) G-P(sol) polarization free energy of solvation -31.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds