Wall clock time and date at job start Tue Mar 31 2020 06:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.47134 * 2 1 4 4 C 1.53003 * 109.46821 * 119.99323 * 2 1 3 5 5 C 1.50700 * 109.47327 * 295.00082 * 4 2 1 6 6 H 1.07992 * 119.99718 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99636 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00421 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99717 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47221 * 59.99965 * 9 7 5 11 11 H 1.48503 * 109.47173 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47360 * 299.99919 * 9 7 5 13 13 C 1.52994 * 109.46796 * 239.99292 * 2 1 3 14 14 N 1.46502 * 109.47242 * 65.00276 * 13 2 1 15 15 C 1.39875 * 119.99993 * 179.97438 * 14 13 2 16 16 C 1.38767 * 120.10768 * 359.97438 * 15 14 13 17 17 C 1.38317 * 120.22387 * 180.02562 * 16 15 14 18 18 C 1.38150 * 120.24653 * 0.02562 * 17 16 15 19 19 C 1.38731 * 119.96708 * 359.97438 * 18 17 16 20 20 C 1.39173 * 120.10310 * 179.97438 * 15 14 13 21 21 O 1.35638 * 132.99423 * 359.67092 * 20 15 14 22 22 C 1.34197 * 109.15298 * 179.88660 * 21 20 15 23 23 O 1.21608 * 125.28961 * 180.16183 * 22 21 20 24 24 N 1.34779 * 109.42084 * 0.40395 * 22 21 20 25 25 C 1.46503 * 126.24759 * 179.77765 * 24 22 21 26 26 H 1.08999 * 109.46934 * 300.00586 * 1 2 3 27 27 H 1.08997 * 109.46928 * 60.00091 * 1 2 3 28 28 H 1.08997 * 109.46954 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46871 * 55.00319 * 4 2 1 30 30 H 1.09000 * 109.46827 * 175.00083 * 4 2 1 31 31 H 0.96997 * 119.99463 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.47635 * 304.99867 * 13 2 1 33 33 H 1.08999 * 109.46888 * 185.00086 * 13 2 1 34 34 H 0.96997 * 119.99761 * 359.97438 * 14 13 2 35 35 H 1.08002 * 119.88753 * 359.97438 * 16 15 14 36 36 H 1.08000 * 119.87520 * 180.02562 * 17 16 15 37 37 H 1.08000 * 120.01931 * 180.02562 * 18 17 16 38 38 H 1.09003 * 109.46836 * 269.97398 * 25 24 22 39 39 H 1.08992 * 109.47299 * 29.97275 * 25 24 22 40 40 H 1.09001 * 109.47163 * 149.97557 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.6413 0.0573 2.4766 6 1 1.0800 0.9743 2.3756 7 6 1.9932 -0.4014 3.7283 8 7 2.6772 -1.5180 3.8513 9 14 1.4996 0.5638 5.2495 10 1 0.0197 0.6705 5.3095 11 1 1.9956 -0.1356 6.4621 12 1 2.0918 1.9242 5.1864 13 6 2.0400 -0.7214 -1.2491 14 7 1.6524 0.0351 -2.4424 15 6 2.0094 -0.4305 -3.7121 16 6 2.7311 -1.6083 -3.8442 17 6 3.0858 -2.0707 -5.0986 18 6 2.7247 -1.3630 -6.2288 19 6 2.0032 -0.1843 -6.1074 20 6 1.6419 0.2862 -4.8472 21 8 0.9483 1.4374 -5.0298 22 6 0.8720 1.7018 -6.3433 23 8 0.3167 2.6655 -6.8349 24 7 1.5019 0.7303 -7.0333 25 6 1.6370 0.6506 -8.4899 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.6054 -1.7197 1.2953 30 1 3.1263 -0.7993 1.2057 31 1 2.9244 -1.8407 4.7319 32 1 1.6054 -1.7199 -1.2950 33 1 3.1263 -0.7996 -1.2055 34 1 1.1483 0.8588 -2.3518 35 1 3.0174 -2.1655 -2.9644 36 1 3.6471 -2.9883 -5.1949 37 1 3.0033 -1.7276 -7.2065 38 1 0.7930 0.0985 -8.9033 39 1 1.6532 1.6567 -8.9089 40 1 2.5651 0.1373 -8.7412 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602576558.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:39 Heat of formation + Delta-G solvation = -46.316834 kcal Electronic energy + Delta-G solvation = -22398.290060 eV Core-core repulsion = 18985.011218 eV Total energy + Delta-G solvation = -3413.278842 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.23511 -40.07130 -38.73116 -38.14152 -36.96684 -35.31400 -33.87449 -30.84875 -30.20904 -28.83114 -28.65765 -27.06766 -24.86680 -24.41502 -23.44102 -22.14778 -21.06499 -19.45023 -18.99060 -18.57771 -18.48442 -17.66572 -16.71260 -16.62827 -16.24243 -16.03139 -15.96673 -15.21346 -15.09122 -14.73677 -14.66725 -14.43173 -14.23238 -13.85769 -13.43066 -13.38887 -13.12677 -13.03808 -12.79288 -12.71666 -12.53343 -12.27735 -12.11953 -12.04206 -11.90571 -11.53029 -11.17320 -11.04405 -10.71298 -10.52187 -9.23047 -8.37925 -8.17595 -6.25724 0.20217 0.34272 1.08310 1.32511 1.41140 1.42325 1.50055 1.82373 2.33199 2.44528 2.71047 3.16607 3.54870 3.64942 4.02228 4.06103 4.17830 4.24224 4.27419 4.40187 4.42342 4.47072 4.64945 4.71998 4.76363 4.79685 4.93370 4.96508 5.15328 5.21675 5.29708 5.35676 5.43928 5.52545 5.53832 5.67167 5.77513 5.87618 5.99426 6.25957 6.34129 6.51121 6.63540 6.89467 7.42298 8.93916 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030241 B = 0.002979 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.684758 B = 9398.000282 C =10172.204151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.088 4.088 3 H 0.057 0.943 4 C 0.037 3.963 5 C -0.533 4.533 6 H 0.058 0.942 7 C 0.003 3.997 8 N -0.931 5.931 9 Si 0.955 3.045 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.271 1.271 13 C 0.140 3.860 14 N -0.738 5.738 15 C 0.256 3.744 16 C -0.202 4.202 17 C -0.030 4.030 18 C -0.157 4.157 19 C 0.110 3.890 20 C -0.089 4.089 21 O -0.255 6.255 22 C 0.622 3.378 23 O -0.536 6.536 24 N -0.540 5.540 25 C 0.091 3.909 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.000 1.000 30 H -0.004 1.004 31 H 0.263 0.737 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.401 0.599 35 H 0.147 0.853 36 H 0.176 0.824 37 H 0.167 0.833 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.714 -3.105 -24.516 24.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.107 4.107 3 H 0.076 0.924 4 C -0.001 4.001 5 C -0.571 4.571 6 H 0.076 0.924 7 C -0.195 4.195 8 N -0.571 5.571 9 Si 0.780 3.220 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.196 1.196 13 C 0.017 3.983 14 N -0.365 5.365 15 C 0.149 3.851 16 C -0.226 4.226 17 C -0.050 4.050 18 C -0.179 4.179 19 C 0.012 3.988 20 C -0.139 4.139 21 O -0.160 6.160 22 C 0.378 3.622 23 O -0.424 6.424 24 N -0.272 5.272 25 C -0.047 4.047 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.018 0.982 30 H 0.015 0.985 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.236 0.764 35 H 0.165 0.835 36 H 0.193 0.807 37 H 0.184 0.816 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.422 -2.621 -24.397 24.578 hybrid contribution -0.591 1.108 1.311 1.815 sum 0.832 -1.513 -23.086 23.151 Atomic orbital electron populations 1.21643 0.94937 1.01203 1.00580 1.21229 0.96392 0.99204 0.93862 0.92421 1.18932 0.94781 0.94800 0.91549 1.21593 1.34640 1.08647 0.92198 0.92382 1.25844 0.95280 0.96040 1.02340 1.70062 1.39993 1.22705 1.24365 0.85652 0.78839 0.78828 0.78641 1.19462 1.20969 1.19568 1.21408 0.99280 0.94992 0.82649 1.44971 1.60997 1.28155 1.02418 1.17066 0.93916 0.92346 0.81748 1.20840 1.05231 0.95898 1.00617 1.21195 0.95174 0.99201 0.89397 1.20233 1.03309 0.92603 1.01778 1.18575 0.99947 0.94444 0.85842 1.18594 1.09365 0.90567 0.95369 1.84837 1.65680 1.39217 1.26308 1.18719 0.80589 0.83745 0.79166 1.91083 1.50261 1.31203 1.69805 1.45873 1.50645 1.21129 1.09505 1.22183 1.05652 1.05193 0.71685 0.93526 0.92661 0.93401 0.98204 0.98523 0.92870 0.91473 0.91892 0.76448 0.83524 0.80688 0.81576 0.89358 0.89516 0.86153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.47 8.88 71.98 0.64 -3.84 16 2 C -0.09 -3.32 2.37 -10.79 -0.03 -3.34 16 3 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 4 C 0.04 1.81 4.45 29.85 0.13 1.95 16 5 C -0.53 -29.05 8.41 25.60 0.22 -28.84 16 6 H 0.06 3.07 7.05 -2.91 -0.02 3.05 16 7 C 0.00 0.16 5.46 84.65 0.46 0.62 16 8 N -0.93 -55.02 13.29 21.45 0.28 -54.74 16 9 Si 0.96 43.69 29.54 68.60 2.03 45.71 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 C 0.14 4.27 4.31 86.38 0.37 4.64 16 14 N -0.74 -20.69 5.47 -339.15 -1.86 -22.55 16 15 C 0.26 6.52 6.66 38.21 0.25 6.77 16 16 C -0.20 -3.99 9.31 22.42 0.21 -3.78 16 17 C -0.03 -0.40 10.03 22.27 0.22 -0.18 16 18 C -0.16 -2.09 10.03 22.37 0.22 -1.87 16 19 C 0.11 2.28 6.84 38.30 0.26 2.55 16 20 C -0.09 -2.39 7.20 22.75 0.16 -2.23 16 21 O -0.26 -8.01 10.72 7.97 0.09 -7.93 16 22 C 0.62 18.57 9.07 129.79 1.18 19.74 16 23 O -0.54 -18.80 17.81 19.16 0.34 -18.46 16 24 N -0.54 -11.37 3.21 -784.59 -2.52 -13.89 16 25 C 0.09 0.98 11.06 127.77 1.41 2.39 16 26 H 0.05 1.80 6.95 -2.39 -0.02 1.79 16 27 H 0.05 1.68 7.18 -2.39 -0.02 1.66 16 28 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 30 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 31 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 32 H 0.07 1.96 7.95 -2.39 -0.02 1.95 16 33 H 0.06 1.90 7.95 -2.39 -0.02 1.88 16 34 H 0.40 11.60 7.67 -92.71 -0.71 10.89 16 35 H 0.15 2.75 6.73 -2.91 -0.02 2.73 16 36 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 37 H 0.17 0.97 8.06 -2.91 -0.02 0.94 16 38 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.09 1.00 8.06 -2.39 -0.02 0.98 16 40 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -70.72 338.26 4.43 -66.28 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.34 Total: 10.98 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: 5.72 Total: -5.42 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -4.09 Total: -91.17 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: 0.43 Total: -26.38 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -70.72 4.43 -66.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602576558.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.966 kcal (2) G-P(sol) polarization free energy of solvation -70.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds