Wall clock time and date at job start Tue Mar 31 2020 06:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.50695 * 109.47196 * 64.99596 * 4 2 1 6 6 H 1.07999 * 120.00313 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99880 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00054 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99981 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47091 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46997 * 120.00139 * 9 7 5 12 12 H 1.48498 * 109.47334 * 240.00730 * 9 7 5 13 13 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 14 14 N 1.46497 * 109.47408 * 295.00294 * 13 2 1 15 15 C 1.39978 * 120.00286 * 179.97438 * 14 13 2 16 16 C 1.38915 * 120.12622 * 0.02562 * 15 14 13 17 17 C 1.38205 * 120.17139 * 179.97438 * 16 15 14 18 18 C 1.38289 * 120.25790 * 359.96894 * 17 16 15 19 19 C 1.38644 * 119.94681 * 0.03050 * 18 17 16 20 20 C 1.38951 * 120.12451 * 179.72063 * 15 14 13 21 21 O 1.36098 * 120.64187 * 0.60801 * 20 15 14 22 22 C 1.43001 * 116.82820 * 146.89864 * 21 20 15 23 23 C 1.50762 * 109.61307 * 46.10963 * 22 21 20 24 24 O 1.21295 * 120.12947 * 148.71626 * 23 22 21 25 25 N 1.35078 * 119.73394 * 328.73802 * 23 22 21 26 26 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 29 29 H 1.09007 * 109.47135 * 184.99942 * 4 2 1 30 30 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 31 31 H 0.97003 * 120.00316 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.46906 * 55.00224 * 13 2 1 33 33 H 1.09006 * 109.47717 * 174.99599 * 13 2 1 34 34 H 0.97008 * 119.99817 * 359.97438 * 14 13 2 35 35 H 1.08000 * 119.91105 * 359.97438 * 16 15 14 36 36 H 1.08004 * 119.87081 * 179.97438 * 17 16 15 37 37 H 1.08004 * 120.02724 * 180.02562 * 18 17 16 38 38 H 1.08999 * 109.44896 * 286.07411 * 22 21 20 39 39 H 1.08999 * 109.42298 * 166.13724 * 22 21 20 40 40 H 0.97004 * 120.49220 * 181.63109 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9932 -0.4015 -3.7284 8 7 2.6764 -1.5185 -3.8513 9 14 1.4996 0.5636 -5.2496 10 1 0.7430 1.7752 -4.8433 11 1 2.7179 0.9685 -5.9959 12 1 0.6457 -0.2852 -6.1189 13 6 2.0400 -0.7212 1.2491 14 7 1.6525 0.0352 2.4423 15 6 2.0089 -0.4311 3.7131 16 6 2.7306 -1.6106 3.8459 17 6 3.0835 -2.0716 5.1001 18 6 2.7214 -1.3622 6.2305 19 6 2.0011 -0.1840 6.1071 20 6 1.6477 0.2874 4.8462 21 8 0.9354 1.4420 4.7376 22 6 0.0122 1.7322 5.7905 23 6 0.6764 1.5010 7.1240 24 8 0.3586 2.1676 8.0862 25 7 1.6272 0.5489 7.2428 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 3.1264 -0.7994 -1.2057 30 1 1.6055 -1.7197 -1.2953 31 1 2.9243 -1.8410 -4.7319 32 1 1.6055 -1.7198 1.2950 33 1 3.1264 -0.7995 1.2055 34 1 1.1488 0.8594 2.3517 35 1 3.0166 -2.1688 2.9666 36 1 3.6442 -2.9895 5.1977 37 1 2.9995 -1.7256 7.2088 38 1 -0.8573 1.0811 5.7005 39 1 -0.3045 2.7727 5.7183 40 1 2.0449 0.3748 8.1007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602668659.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:37 Heat of formation + Delta-G solvation = -76.398795 kcal Electronic energy + Delta-G solvation = -22453.116947 eV Core-core repulsion = 19038.533654 eV Total energy + Delta-G solvation = -3414.583293 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.37292 -40.16826 -38.66699 -38.03799 -36.46505 -35.01641 -33.72358 -31.08374 -29.99489 -28.71590 -28.60281 -27.11942 -24.93341 -24.51508 -22.72845 -21.33321 -20.50331 -19.76466 -19.00952 -18.52588 -17.92523 -17.21654 -16.93145 -16.52718 -16.27504 -16.12095 -15.75493 -15.59058 -15.33249 -14.91362 -14.45523 -14.32998 -14.20580 -13.78087 -13.65210 -13.33882 -12.96825 -12.78124 -12.73490 -12.40892 -12.26228 -12.19621 -12.07472 -11.91520 -11.55401 -11.20567 -11.12826 -10.99146 -10.67991 -10.52115 -8.97211 -8.23345 -8.16361 -6.24525 0.10756 0.56673 1.26214 1.41007 1.42624 1.54207 1.71830 2.33254 2.41789 2.53827 2.86171 3.06202 3.18066 3.89727 4.00811 4.09127 4.11287 4.22018 4.24930 4.39751 4.48519 4.51359 4.59485 4.80895 4.84376 4.97568 5.07482 5.17710 5.24020 5.33184 5.40440 5.48298 5.55298 5.60505 5.77137 5.79533 5.80584 5.89466 6.09600 6.30195 6.50079 6.71283 6.84963 6.91857 7.43727 8.95662 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029140 B = 0.003025 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.649223 B = 9252.531047 C =10061.813110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.086 4.086 3 H 0.059 0.941 4 C 0.035 3.965 5 C -0.528 4.528 6 H 0.061 0.939 7 C 0.000 4.000 8 N -0.933 5.933 9 Si 0.957 3.043 10 H -0.263 1.263 11 H -0.282 1.282 12 H -0.281 1.281 13 C 0.142 3.858 14 N -0.731 5.731 15 C 0.224 3.776 16 C -0.205 4.205 17 C -0.053 4.053 18 C -0.181 4.181 19 C 0.128 3.872 20 C -0.027 4.027 21 O -0.315 6.315 22 C 0.050 3.950 23 C 0.491 3.509 24 O -0.552 6.552 25 N -0.650 5.650 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.046 0.954 29 H -0.007 1.007 30 H -0.003 1.003 31 H 0.262 0.738 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.405 0.595 35 H 0.133 0.867 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.114 0.886 39 H 0.160 0.840 40 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.204 0.351 21.292 21.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.105 4.105 3 H 0.078 0.922 4 C -0.003 4.003 5 C -0.566 4.566 6 H 0.079 0.921 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.782 3.218 10 H -0.187 1.187 11 H -0.208 1.208 12 H -0.207 1.207 13 C 0.018 3.982 14 N -0.360 5.360 15 C 0.118 3.882 16 C -0.228 4.228 17 C -0.072 4.072 18 C -0.204 4.204 19 C 0.032 3.968 20 C -0.077 4.077 21 O -0.230 6.230 22 C -0.028 4.028 23 C 0.280 3.720 24 O -0.430 6.430 25 N -0.297 5.297 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.011 0.989 30 H 0.016 0.984 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.241 0.759 35 H 0.151 0.849 36 H 0.176 0.824 37 H 0.173 0.827 38 H 0.131 0.869 39 H 0.177 0.823 40 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -2.357 0.713 21.235 21.377 hybrid contribution -0.072 0.413 -0.647 0.771 sum -2.428 1.126 20.588 20.761 Atomic orbital electron populations 1.21630 0.94638 1.01100 1.00827 1.21209 0.96622 0.99149 0.93546 0.92249 1.18954 0.94613 0.94801 0.91887 1.21657 1.34381 1.08561 0.92049 0.92113 1.25879 0.95330 0.96053 1.02471 1.70084 1.40233 1.22829 1.24209 0.85517 0.78005 0.78947 0.79304 1.18676 1.20752 1.20658 1.21316 0.98753 0.94914 0.83226 1.44749 1.61214 1.28246 1.01806 1.17423 0.95032 0.91985 0.83768 1.20839 1.05274 0.96974 0.99742 1.21040 0.96568 0.99446 0.90128 1.20676 1.04582 0.94184 1.00923 1.17829 1.00215 0.94279 0.84435 1.17995 1.06569 0.91560 0.91579 1.86185 1.53632 1.37132 1.46060 1.23320 0.91749 1.06919 0.80793 1.21937 0.79495 0.78514 0.92099 1.90785 1.63385 1.47239 1.41603 1.43659 1.38684 1.35695 1.11653 0.92060 0.93701 0.93514 0.98868 0.98449 0.92950 0.92180 0.92799 0.75940 0.84924 0.82411 0.82721 0.86878 0.82269 0.73596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.24 8.88 71.98 0.64 -3.60 16 2 C -0.09 -3.22 2.37 -10.79 -0.03 -3.24 16 3 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 4 C 0.04 1.72 4.45 29.85 0.13 1.86 16 5 C -0.53 -28.61 8.41 25.60 0.22 -28.39 16 6 H 0.06 3.17 7.06 -2.91 -0.02 3.15 16 7 C 0.00 0.01 5.46 84.66 0.46 0.47 16 8 N -0.93 -55.26 13.29 21.45 0.28 -54.98 16 9 Si 0.96 43.38 29.54 68.60 2.03 45.41 16 10 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 13 C 0.14 4.38 4.31 86.38 0.37 4.75 16 14 N -0.73 -19.75 5.46 -339.12 -1.85 -21.60 16 15 C 0.22 5.60 6.66 38.17 0.25 5.86 16 16 C -0.20 -4.48 9.31 22.42 0.21 -4.27 16 17 C -0.05 -0.86 10.03 22.27 0.22 -0.64 16 18 C -0.18 -2.83 9.95 22.38 0.22 -2.61 16 19 C 0.13 2.52 6.54 38.12 0.25 2.77 16 20 C -0.03 -0.63 6.46 22.67 0.15 -0.48 16 21 O -0.32 -7.18 9.72 -94.66 -0.92 -8.10 16 22 C 0.05 0.87 7.18 71.26 0.51 1.38 16 23 C 0.49 10.34 7.94 87.63 0.70 11.04 16 24 O -0.55 -14.84 17.95 -3.08 -0.06 -14.89 16 25 N -0.65 -11.70 5.47 -302.75 -1.66 -13.35 16 26 H 0.06 1.71 7.18 -2.39 -0.02 1.69 16 27 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.05 1.74 6.95 -2.38 -0.02 1.72 16 29 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 30 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 32 H 0.06 1.83 7.95 -2.39 -0.02 1.81 16 33 H 0.05 1.71 7.96 -2.38 -0.02 1.69 16 34 H 0.40 10.73 7.05 -92.70 -0.65 10.08 16 35 H 0.13 2.91 6.74 -2.91 -0.02 2.89 16 36 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 37 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 38 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.16 2.12 8.14 -2.39 -0.02 2.11 16 40 H 0.42 5.81 8.89 -92.71 -0.82 4.99 16 Total: -1.00 -66.87 333.76 1.73 -65.14 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -0.40 Total: 17.49 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: 4.31 Total: -15.11 kcal Atomic # 7 Polarization: -86.71 SS G_CDS: -3.22 Total: -89.93 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.98 Total: -23.00 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -66.87 1.73 -65.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602668659.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.255 kcal (2) G-P(sol) polarization free energy of solvation -66.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds