Wall clock time and date at job start Tue Mar 31 2020 06:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21285 * 120.00460 * 2 1 4 4 N 1.34778 * 119.99839 * 179.97438 * 2 1 3 5 5 C 1.46491 * 120.00196 * 184.19860 * 4 2 1 6 6 C 1.50697 * 109.47296 * 270.00168 * 5 4 2 7 7 O 1.21286 * 120.00232 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00071 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00136 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.46743 * 34.99614 * 9 8 6 11 11 C 1.52995 * 109.47267 * 275.00338 * 9 8 6 12 12 C 1.50698 * 109.47387 * 155.00028 * 9 8 6 13 13 H 1.08004 * 119.99738 * 359.97438 * 12 9 8 14 14 C 1.37872 * 120.00221 * 180.02562 * 12 9 8 15 15 N 1.31519 * 119.99918 * 359.97438 * 14 12 9 16 16 Si 1.86799 * 120.00336 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47089 * 269.99698 * 16 14 12 18 18 H 1.48503 * 109.46954 * 29.99425 * 16 14 12 19 19 H 1.48493 * 109.47441 * 149.99417 * 16 14 12 20 20 C 1.39928 * 119.99764 * 4.20280 * 4 2 1 21 21 C 1.38878 * 120.06801 * 292.77758 * 20 4 2 22 22 C 1.38115 * 119.92305 * 179.70229 * 21 20 4 23 23 C 1.38279 * 120.07344 * 0.57665 * 22 21 20 24 24 C 1.38283 * 120.13987 * 359.72170 * 23 22 21 25 25 C 1.38103 * 120.07291 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.46725 * 274.38050 * 1 2 3 27 27 H 1.09003 * 109.46837 * 34.37432 * 1 2 3 28 28 H 1.08996 * 109.47497 * 154.37700 * 1 2 3 29 29 H 1.08997 * 109.47554 * 149.99807 * 5 4 2 30 30 H 1.09003 * 109.47209 * 30.00444 * 5 4 2 31 31 H 0.97000 * 120.00156 * 0.02562 * 8 6 5 32 32 H 1.09003 * 109.46912 * 300.00066 * 11 9 8 33 33 H 1.09003 * 109.47769 * 59.99785 * 11 9 8 34 34 H 1.08997 * 109.47463 * 179.97438 * 11 9 8 35 35 H 0.96997 * 119.99887 * 179.97438 * 15 14 12 36 36 H 1.07994 * 120.03559 * 359.97438 * 21 20 4 37 37 H 1.07999 * 119.95872 * 180.30181 * 22 21 20 38 38 H 1.08004 * 119.92790 * 179.70000 * 23 22 21 39 39 H 1.08004 * 119.96207 * 179.97438 * 24 23 22 40 40 H 1.08002 * 120.03705 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6429 -1.1690 0.0934 6 6 4.2343 -1.1182 -1.2917 7 8 3.5063 -1.0834 -2.2611 8 7 5.5724 -1.1103 -1.4533 9 6 6.1474 -1.0615 -2.7999 10 1 5.5147 -0.4498 -3.4431 11 6 6.2341 -2.4789 -3.3691 12 6 7.5279 -0.4608 -2.7351 13 1 7.9361 -0.1464 -1.7859 14 6 8.2696 -0.3116 -3.8878 15 7 7.7723 -0.6940 -5.0438 16 14 9.9812 0.4323 -3.8075 17 1 9.8889 1.9053 -3.9723 18 1 10.5959 0.1189 -2.4925 19 1 10.8193 -0.1358 -4.8937 20 6 1.4840 -2.3774 -0.0877 21 6 0.6647 -2.7863 0.9564 22 6 -0.0266 -3.9784 0.8635 23 6 0.1056 -4.7702 -0.2624 24 6 0.9255 -4.3688 -1.3011 25 6 1.6146 -3.1749 -1.2172 26 1 -0.3633 0.0785 1.0247 27 1 -0.3633 0.8482 -0.5802 28 1 -0.3634 -0.9265 -0.4444 29 1 3.9739 -2.0773 0.5967 30 1 3.9719 -0.2986 0.6612 31 1 6.1547 -1.1378 -0.6780 32 1 6.8666 -3.0907 -2.7259 33 1 5.2355 -2.9135 -3.4160 34 1 6.6614 -2.4426 -4.3711 35 1 8.2940 -0.5887 -5.8547 36 1 0.5648 -2.1707 1.8381 37 1 -0.6677 -4.2946 1.6731 38 1 -0.4323 -5.7042 -0.3305 39 1 1.0270 -4.9896 -2.1790 40 1 2.2550 -2.8621 -2.0286 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602819108.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:17 Heat of formation + Delta-G solvation = -40.027805 kcal Electronic energy + Delta-G solvation = -23148.406986 eV Core-core repulsion = 19735.400857 eV Total energy + Delta-G solvation = -3413.006129 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.70969 -38.71934 -38.39298 -35.39192 -34.63184 -32.40609 -31.26439 -30.67883 -29.70101 -28.99542 -26.53650 -25.23886 -22.97569 -22.60313 -21.45134 -19.78681 -19.34515 -17.61005 -17.27993 -16.68402 -16.24086 -15.85242 -15.24478 -14.99975 -14.77520 -14.47894 -14.22027 -14.02316 -13.51843 -13.33337 -13.00959 -12.88096 -12.51899 -12.38212 -12.21578 -12.02620 -11.75013 -11.42789 -11.27868 -11.07523 -10.94876 -10.71187 -10.30995 -10.23218 -10.04365 -9.72424 -9.06300 -9.05698 -8.92491 -8.54377 -8.37541 -7.91374 -6.11380 -4.20470 1.10189 1.27763 2.58896 2.88256 3.26043 3.32236 3.33382 3.35784 3.61724 4.13919 4.40331 4.53146 4.80629 4.84185 5.04827 5.15215 5.21110 5.28919 5.30983 5.31746 5.47760 5.48347 5.51926 5.62043 5.79925 5.93195 6.20049 6.33731 6.42393 6.50078 6.79250 6.81867 6.94163 7.14045 7.43219 7.45353 7.55745 7.69569 7.91696 8.15058 8.15398 8.65388 8.78586 9.10841 9.46941 10.94673 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023642 B = 0.003949 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.070470 B = 7089.037012 C = 7807.479637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.523 3.477 3 O -0.530 6.530 4 N -0.553 5.553 5 C 0.092 3.908 6 C 0.488 3.512 7 O -0.546 6.546 8 N -0.707 5.707 9 C 0.265 3.735 10 H 0.048 0.952 11 C -0.145 4.145 12 C -0.533 4.533 13 H 0.061 0.939 14 C 0.066 3.934 15 N -0.884 5.884 16 Si 0.902 3.098 17 H -0.279 1.279 18 H -0.273 1.273 19 H -0.285 1.285 20 C 0.134 3.866 21 C -0.124 4.124 22 C -0.115 4.115 23 C -0.122 4.122 24 C -0.110 4.110 25 C -0.111 4.111 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.389 0.611 32 H 0.026 0.974 33 H 0.013 0.987 34 H 0.090 0.910 35 H 0.264 0.736 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.939 -7.874 13.006 21.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.313 3.687 3 O -0.405 6.405 4 N -0.281 5.281 5 C -0.034 4.034 6 C 0.271 3.729 7 O -0.424 6.424 8 N -0.355 5.355 9 C 0.163 3.837 10 H 0.066 0.934 11 C -0.203 4.203 12 C -0.572 4.572 13 H 0.079 0.921 14 C -0.137 4.137 15 N -0.522 5.522 16 Si 0.729 3.271 17 H -0.205 1.205 18 H -0.198 1.198 19 H -0.211 1.211 20 C 0.043 3.957 21 C -0.143 4.143 22 C -0.134 4.134 23 C -0.140 4.140 24 C -0.128 4.128 25 C -0.130 4.130 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.101 0.899 29 H 0.121 0.879 30 H 0.130 0.870 31 H 0.221 0.779 32 H 0.045 0.955 33 H 0.032 0.968 34 H 0.108 0.892 35 H 0.074 0.926 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.144 0.856 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.050 -7.230 12.087 20.612 hybrid contribution 1.332 0.269 0.276 1.387 sum -13.717 -6.960 12.363 19.734 Atomic orbital electron populations 1.21921 0.91408 1.05119 1.04527 1.20826 0.90686 0.82512 0.74707 1.90742 1.70684 1.30572 1.48542 1.45060 1.05617 1.04566 1.72899 1.21511 0.79750 1.05103 0.97006 1.20761 0.83659 0.77572 0.90899 1.90612 1.59984 1.50569 1.41266 1.46496 1.05109 1.72081 1.11791 1.18738 0.93268 0.93990 0.77664 0.93428 1.22061 0.97276 0.97325 1.03672 1.21222 0.99875 1.41857 0.94219 0.92052 1.24886 0.98490 0.95175 0.95152 1.69904 1.37611 1.46373 0.98278 0.86440 0.83485 0.79357 0.77773 1.20542 1.19827 1.21077 1.17625 0.96406 0.87401 0.94235 1.21277 0.98410 0.97115 0.97539 1.20974 0.99798 0.94315 0.98298 1.21222 0.98933 0.99799 0.94023 1.21159 0.96531 0.96140 0.99015 1.21880 0.99344 0.94282 0.97496 0.88888 0.88838 0.89917 0.87916 0.86979 0.77907 0.95483 0.96816 0.89165 0.92599 0.85781 0.85733 0.85959 0.85586 0.83642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 9.23 36.01 0.33 -1.55 16 2 C 0.52 8.25 7.68 -10.98 -0.08 8.16 16 3 O -0.53 -10.54 16.72 5.55 0.09 -10.44 16 4 N -0.55 -8.21 2.04 -114.74 -0.23 -8.45 16 5 C 0.09 1.41 5.78 -5.20 -0.03 1.38 16 6 C 0.49 9.87 7.62 -10.99 -0.08 9.78 16 7 O -0.55 -13.00 13.90 5.55 0.08 -12.92 16 8 N -0.71 -14.87 5.07 -54.93 -0.28 -15.15 16 9 C 0.27 6.84 2.56 -69.09 -0.18 6.66 16 10 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 11 C -0.14 -3.59 9.26 37.15 0.34 -3.25 16 12 C -0.53 -14.36 8.73 -34.44 -0.30 -14.66 16 13 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 14 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 15 N -0.88 -25.20 11.32 55.43 0.63 -24.57 16 16 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 20 C 0.13 1.72 4.04 -83.69 -0.34 1.38 16 21 C -0.12 -1.21 8.43 -39.39 -0.33 -1.54 16 22 C -0.12 -0.96 10.04 -39.61 -0.40 -1.36 16 23 C -0.12 -1.08 10.04 -39.55 -0.40 -1.48 16 24 C -0.11 -1.21 10.04 -39.61 -0.40 -1.61 16 25 C -0.11 -1.53 9.56 -39.40 -0.38 -1.91 16 26 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.08 0.86 6.36 -51.93 -0.33 0.53 16 29 H 0.10 1.25 8.05 -51.93 -0.42 0.83 16 30 H 0.11 1.66 7.48 -51.93 -0.39 1.27 16 31 H 0.39 7.00 8.54 -40.82 -0.35 6.65 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 37 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 40 H 0.15 2.51 5.81 -52.49 -0.30 2.21 16 LS Contribution 338.95 15.07 5.11 5.11 Total: -1.00 -33.77 338.95 -7.38 -41.16 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -5.42 Total: 7.63 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -2.33 Total: 1.73 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.11 Total: -48.17 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.17 Total: -23.37 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.77 -7.38 -41.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602819108.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.131 kcal (2) G-P(sol) polarization free energy of solvation -33.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds