Wall clock time and date at job start Tue Mar 31 2020 06:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21285 * 120.00460 * 2 1 4 4 N 1.34778 * 119.99839 * 179.97438 * 2 1 3 5 5 C 1.46491 * 120.00196 * 184.19860 * 4 2 1 6 6 C 1.50697 * 109.47296 * 270.00168 * 5 4 2 7 7 O 1.21286 * 120.00232 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00071 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00136 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.46743 * 34.99614 * 9 8 6 11 11 C 1.52995 * 109.47267 * 275.00338 * 9 8 6 12 12 C 1.50698 * 109.47387 * 155.00028 * 9 8 6 13 13 H 1.08004 * 119.99738 * 359.97438 * 12 9 8 14 14 C 1.37872 * 120.00221 * 180.02562 * 12 9 8 15 15 N 1.31519 * 119.99918 * 359.97438 * 14 12 9 16 16 Si 1.86799 * 120.00336 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47089 * 269.99698 * 16 14 12 18 18 H 1.48503 * 109.46954 * 29.99425 * 16 14 12 19 19 H 1.48493 * 109.47441 * 149.99417 * 16 14 12 20 20 C 1.39928 * 119.99764 * 4.20280 * 4 2 1 21 21 C 1.38878 * 120.06801 * 292.77758 * 20 4 2 22 22 C 1.38115 * 119.92305 * 179.70229 * 21 20 4 23 23 C 1.38279 * 120.07344 * 0.57665 * 22 21 20 24 24 C 1.38283 * 120.13987 * 359.72170 * 23 22 21 25 25 C 1.38103 * 120.07291 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.46725 * 274.38050 * 1 2 3 27 27 H 1.09003 * 109.46837 * 34.37432 * 1 2 3 28 28 H 1.08996 * 109.47497 * 154.37700 * 1 2 3 29 29 H 1.08997 * 109.47554 * 149.99807 * 5 4 2 30 30 H 1.09003 * 109.47209 * 30.00444 * 5 4 2 31 31 H 0.97000 * 120.00156 * 0.02562 * 8 6 5 32 32 H 1.09003 * 109.46912 * 300.00066 * 11 9 8 33 33 H 1.09003 * 109.47769 * 59.99785 * 11 9 8 34 34 H 1.08997 * 109.47463 * 179.97438 * 11 9 8 35 35 H 0.96997 * 119.99887 * 179.97438 * 15 14 12 36 36 H 1.07994 * 120.03559 * 359.97438 * 21 20 4 37 37 H 1.07999 * 119.95872 * 180.30181 * 22 21 20 38 38 H 1.08004 * 119.92790 * 179.70000 * 23 22 21 39 39 H 1.08004 * 119.96207 * 179.97438 * 24 23 22 40 40 H 1.08002 * 120.03705 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6429 -1.1690 0.0934 6 6 4.2343 -1.1182 -1.2917 7 8 3.5063 -1.0834 -2.2611 8 7 5.5724 -1.1103 -1.4533 9 6 6.1474 -1.0615 -2.7999 10 1 5.5147 -0.4498 -3.4431 11 6 6.2341 -2.4789 -3.3691 12 6 7.5279 -0.4608 -2.7351 13 1 7.9361 -0.1464 -1.7859 14 6 8.2696 -0.3116 -3.8878 15 7 7.7723 -0.6940 -5.0438 16 14 9.9812 0.4323 -3.8075 17 1 9.8889 1.9053 -3.9723 18 1 10.5959 0.1189 -2.4925 19 1 10.8193 -0.1358 -4.8937 20 6 1.4840 -2.3774 -0.0877 21 6 0.6647 -2.7863 0.9564 22 6 -0.0266 -3.9784 0.8635 23 6 0.1056 -4.7702 -0.2624 24 6 0.9255 -4.3688 -1.3011 25 6 1.6146 -3.1749 -1.2172 26 1 -0.3633 0.0785 1.0247 27 1 -0.3633 0.8482 -0.5802 28 1 -0.3634 -0.9265 -0.4444 29 1 3.9739 -2.0773 0.5967 30 1 3.9719 -0.2986 0.6612 31 1 6.1547 -1.1378 -0.6780 32 1 6.8666 -3.0907 -2.7259 33 1 5.2355 -2.9135 -3.4160 34 1 6.6614 -2.4426 -4.3711 35 1 8.2940 -0.5887 -5.8547 36 1 0.5648 -2.1707 1.8381 37 1 -0.6677 -4.2946 1.6731 38 1 -0.4323 -5.7042 -0.3305 39 1 1.0270 -4.9896 -2.1790 40 1 2.2550 -2.8621 -2.0286 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602819108.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:17 Heat of formation + Delta-G solvation = -62.601708 kcal Electronic energy + Delta-G solvation = -23149.385864 eV Core-core repulsion = 19735.400857 eV Total energy + Delta-G solvation = -3413.985007 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.87385 -40.17021 -39.57475 -36.89320 -36.24030 -34.37497 -32.31304 -31.74190 -30.75986 -30.53979 -27.85150 -27.34762 -23.88403 -23.45999 -23.25629 -21.41815 -20.63243 -19.17414 -18.50601 -17.93917 -17.68988 -17.12709 -16.87220 -16.48689 -16.08416 -15.72384 -15.48672 -15.36319 -14.75522 -14.50471 -14.38647 -14.26299 -13.84012 -13.73639 -13.41795 -13.16487 -13.13696 -12.98914 -12.86941 -12.78007 -12.32036 -12.26827 -12.17400 -12.13966 -11.26233 -11.15509 -11.12400 -10.64012 -10.24685 -9.86181 -9.79264 -9.41733 -8.20726 -6.38682 0.27505 0.47344 1.37796 1.42450 1.43640 1.54137 1.73188 1.79548 2.34876 2.65369 2.81307 3.09595 3.54099 3.92196 4.05941 4.09761 4.12757 4.27599 4.33003 4.37645 4.55296 4.55876 4.63644 4.70625 4.75208 4.87503 4.93405 5.05011 5.14345 5.24138 5.39769 5.52047 5.56683 5.58595 5.62990 5.66574 5.87652 5.97420 6.06349 6.36961 6.68823 6.87405 7.01093 7.28687 7.49840 8.85663 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023642 B = 0.003949 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.070470 B = 7089.037012 C = 7807.479637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.511 3.489 3 O -0.584 6.584 4 N -0.552 5.552 5 C 0.101 3.899 6 C 0.481 3.519 7 O -0.587 6.587 8 N -0.704 5.704 9 C 0.272 3.728 10 H -0.009 1.009 11 C -0.128 4.128 12 C -0.549 4.549 13 H 0.073 0.927 14 C 0.014 3.986 15 N -0.918 5.918 16 Si 0.974 3.026 17 H -0.280 1.280 18 H -0.258 1.258 19 H -0.281 1.281 20 C 0.113 3.887 21 C -0.112 4.112 22 C -0.102 4.102 23 C -0.111 4.111 24 C -0.119 4.119 25 C -0.140 4.140 26 H 0.129 0.871 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.140 0.860 30 H 0.120 0.880 31 H 0.406 0.594 32 H 0.042 0.958 33 H 0.011 0.989 34 H 0.065 0.935 35 H 0.266 0.734 36 H 0.148 0.852 37 H 0.164 0.836 38 H 0.154 0.846 39 H 0.130 0.870 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.966 -9.283 16.139 24.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.303 3.697 3 O -0.463 6.463 4 N -0.279 5.279 5 C -0.025 4.025 6 C 0.267 3.733 7 O -0.468 6.468 8 N -0.354 5.354 9 C 0.169 3.831 10 H 0.009 0.991 11 C -0.187 4.187 12 C -0.587 4.587 13 H 0.091 0.909 14 C -0.186 4.186 15 N -0.556 5.556 16 Si 0.798 3.202 17 H -0.206 1.206 18 H -0.182 1.182 19 H -0.207 1.207 20 C 0.023 3.977 21 C -0.132 4.132 22 C -0.120 4.120 23 C -0.129 4.129 24 C -0.137 4.137 25 C -0.160 4.160 26 H 0.147 0.853 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.158 0.842 30 H 0.138 0.862 31 H 0.241 0.759 32 H 0.061 0.939 33 H 0.030 0.970 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.165 0.835 37 H 0.181 0.819 38 H 0.171 0.829 39 H 0.148 0.852 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.095 -8.682 15.264 23.821 hybrid contribution 1.541 0.626 -0.724 1.814 sum -14.555 -8.056 14.540 22.094 Atomic orbital electron populations 1.21951 0.87693 1.05456 1.06876 1.21760 0.92610 0.81921 0.73386 1.90709 1.72047 1.32364 1.51210 1.45171 1.05323 1.05430 1.71949 1.21499 0.80508 1.07159 0.93332 1.21718 0.82927 0.75905 0.92732 1.90598 1.60828 1.52001 1.43393 1.46247 1.05998 1.72482 1.10634 1.18316 0.92247 0.93347 0.79228 0.99148 1.21842 0.97188 0.97156 1.02514 1.21559 1.00183 1.42080 0.94902 0.90891 1.25826 1.02688 0.95437 0.94671 1.70058 1.39249 1.47303 0.99017 0.85318 0.78361 0.78062 0.78442 1.20594 1.18166 1.20662 1.17777 0.97954 0.86707 0.95227 1.21480 0.96920 0.97787 0.96970 1.21434 0.98802 0.92990 0.98753 1.21588 0.97518 1.00773 0.93036 1.21274 0.96870 0.95259 1.00309 1.21620 1.00747 0.96368 0.97220 0.85262 0.88969 0.89085 0.84222 0.86248 0.75909 0.93852 0.96986 0.91611 0.92522 0.83460 0.81854 0.82851 0.85222 0.88293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 9.23 71.24 0.66 -2.63 16 2 C 0.51 16.10 7.68 87.66 0.67 16.77 16 3 O -0.58 -23.86 16.72 -3.05 -0.05 -23.91 16 4 N -0.55 -16.25 2.04 -635.31 -1.30 -17.54 16 5 C 0.10 3.07 5.78 85.63 0.49 3.57 16 6 C 0.48 20.33 7.62 87.66 0.67 21.00 16 7 O -0.59 -30.02 13.90 -3.05 -0.04 -30.06 16 8 N -0.70 -30.58 5.07 -446.09 -2.26 -32.84 16 9 C 0.27 14.71 2.56 44.24 0.11 14.82 16 10 H -0.01 -0.61 7.58 -2.38 -0.02 -0.63 16 11 C -0.13 -6.64 9.26 71.98 0.67 -5.97 16 12 C -0.55 -30.10 8.73 25.60 0.22 -29.88 16 13 H 0.07 3.74 7.74 -2.91 -0.02 3.71 16 14 C 0.01 0.76 5.30 84.65 0.45 1.21 16 15 N -0.92 -54.05 11.32 21.45 0.24 -53.81 16 16 Si 0.97 43.10 29.54 68.60 2.03 45.13 16 17 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 18 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 20 C 0.11 2.78 4.04 38.15 0.15 2.93 16 21 C -0.11 -1.77 8.43 22.39 0.19 -1.58 16 22 C -0.10 -1.20 10.04 22.25 0.22 -0.97 16 23 C -0.11 -1.56 10.04 22.29 0.22 -1.33 16 24 C -0.12 -2.50 10.04 22.25 0.22 -2.27 16 25 C -0.14 -3.96 9.56 22.39 0.21 -3.75 16 26 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.09 1.72 6.36 -2.39 -0.02 1.70 16 29 H 0.14 3.18 8.05 -2.39 -0.02 3.16 16 30 H 0.12 3.50 7.48 -2.39 -0.02 3.48 16 31 H 0.41 14.63 8.54 -92.71 -0.79 13.84 16 32 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 35 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 36 H 0.15 1.67 8.06 -2.91 -0.02 1.64 16 37 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 38 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 39 H 0.13 2.49 8.06 -2.91 -0.02 2.47 16 40 H 0.10 3.74 5.81 -2.91 -0.02 3.73 16 Total: -1.00 -79.41 338.95 4.05 -75.35 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.26 Total: 25.77 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: 5.17 Total: 11.90 kcal Atomic # 7 Polarization: -100.88 SS G_CDS: -3.31 Total: -104.20 kcal Atomic # 8 Polarization: -53.87 SS G_CDS: -0.09 Total: -53.97 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -79.41 4.05 -75.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602819108.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.753 kcal (2) G-P(sol) polarization free energy of solvation -79.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds