Wall clock time and date at job start Tue Mar 31 2020 06:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46706 * 2 1 4 4 C 1.50694 * 109.46995 * 119.99740 * 2 1 3 5 5 H 1.08000 * 119.99922 * 120.00320 * 4 2 1 6 6 C 1.37871 * 120.00379 * 300.00123 * 4 2 1 7 7 N 1.31514 * 119.99933 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00361 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47551 * 89.99677 * 8 6 4 10 10 H 1.48498 * 109.47261 * 210.00293 * 8 6 4 11 11 H 1.48505 * 109.47029 * 330.00077 * 8 6 4 12 12 N 1.46903 * 109.47102 * 240.00081 * 2 1 3 13 13 C 1.46895 * 111.00168 * 84.99888 * 12 2 1 14 14 C 1.52999 * 109.47280 * 179.97438 * 13 12 2 15 15 H 1.08999 * 109.47003 * 60.00103 * 14 13 12 16 16 O 1.42897 * 109.47176 * 300.00097 * 14 13 12 17 17 C 1.53001 * 109.46982 * 179.97438 * 14 13 12 18 18 O 1.42900 * 109.46846 * 184.99804 * 17 14 13 19 19 C 1.35712 * 117.00071 * 180.02562 * 18 17 14 20 20 C 1.38648 * 120.14460 * 0.02562 * 19 18 17 21 21 C 1.38108 * 120.08662 * 180.30065 * 20 19 18 22 22 C 1.38518 * 120.39241 * 359.43947 * 21 20 19 23 23 C 1.37814 * 120.29377 * 0.55799 * 22 21 20 24 24 C 1.39715 * 119.90707 * 359.72994 * 23 22 21 25 25 C 1.43203 * 120.19581 * 180.02562 * 24 23 22 26 26 N 9.07316 * 105.46069 * 251.43324 * 2 1 3 27 27 H 1.09000 * 109.46929 * 60.00520 * 1 2 3 28 28 H 1.09005 * 109.46524 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47371 * 299.99987 * 1 2 3 30 30 H 0.97000 * 120.00197 * 180.02562 * 7 6 4 31 31 H 1.00900 * 111.00094 * 321.04267 * 12 2 1 32 32 H 1.09004 * 109.47444 * 59.99646 * 13 12 2 33 33 H 1.09000 * 109.46871 * 300.00115 * 13 12 2 34 34 H 0.96707 * 113.99845 * 299.99792 * 16 14 13 35 35 H 1.09000 * 109.46776 * 65.00231 * 17 14 13 36 36 H 1.08992 * 109.47281 * 305.00133 * 17 14 13 37 37 H 1.08002 * 119.95335 * 0.02562 * 20 19 18 38 38 H 1.07998 * 119.79844 * 179.70074 * 21 20 19 39 39 H 1.07994 * 119.85021 * 180.28160 * 22 21 20 40 40 H 1.08007 * 120.04922 * 179.74375 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3225 -1.1194 4.0080 9 1 3.6305 -0.5440 4.4119 10 1 1.3444 -0.9489 5.1122 11 1 2.4881 -2.5653 3.7122 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2225 -2.3469 14 6 2.5963 -0.5329 -3.5742 15 1 1.9202 -1.3567 -3.8030 16 8 3.9013 -1.0486 -3.3042 17 6 2.6610 0.4201 -4.7694 18 8 3.0289 -0.3102 -5.9414 19 6 3.1323 0.3923 -7.0979 20 6 2.8859 1.7567 -7.1082 21 6 2.9854 2.4693 -8.2870 22 6 3.3424 1.8314 -9.4636 23 6 3.5909 0.4758 -9.4716 24 6 3.4881 -0.2583 -8.2873 25 6 3.7454 -1.6670 -8.2885 26 7 3.9487 -2.7844 -8.2897 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.7087 1.1613 3.4843 31 1 1.4496 -1.4979 -1.4101 32 1 2.7588 1.0462 -2.1183 33 1 1.0871 0.6162 -2.5525 34 1 4.5564 -0.3696 -3.0922 35 1 3.4028 1.1950 -4.5764 36 1 1.6849 0.8809 -4.9199 37 1 2.6115 2.2621 -6.1940 38 1 2.7878 3.5311 -8.2906 39 1 3.4220 2.3980 -10.3795 40 1 3.8649 -0.0183 -10.3921 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602869730.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:12 Heat of formation + Delta-G solvation = -32.538551 kcal Electronic energy + Delta-G solvation = -21854.335210 eV Core-core repulsion = 18441.653840 eV Total energy + Delta-G solvation = -3412.681371 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.69806 -38.45591 -37.11628 -36.46960 -35.37835 -32.56616 -31.86547 -30.96134 -30.04702 -28.08268 -25.25868 -24.76399 -24.17007 -22.41063 -21.51170 -20.23396 -19.47398 -18.04294 -16.91412 -16.67422 -16.38695 -15.67928 -15.42849 -15.02467 -14.90347 -14.73871 -14.14032 -13.95696 -13.76246 -13.42416 -13.22829 -12.88775 -12.87869 -12.65353 -12.44734 -11.99797 -11.80749 -11.62553 -11.53412 -11.32399 -10.95709 -10.84763 -10.69657 -10.57719 -10.18585 -10.12069 -9.69970 -9.45538 -9.03361 -8.65020 -8.38916 -7.29195 -6.01559 -4.04510 0.43269 0.94406 2.58941 2.69466 2.73231 3.32297 3.38367 3.43629 3.56253 3.68455 4.31637 4.42419 4.45024 4.48502 4.64155 4.69413 4.85333 4.87625 5.00660 5.12328 5.28838 5.30458 5.35080 5.42517 5.62299 5.75078 5.79475 5.97242 5.97942 6.17616 6.22694 6.61079 6.77056 6.93006 7.01802 7.26975 7.41881 7.68500 7.84668 7.88481 8.21728 8.45956 8.56056 9.03491 9.61205 11.05631 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030532 B = 0.002665 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.860256 B =10505.419367 C =11073.316957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.212 3.788 3 H 0.032 0.968 4 C -0.494 4.494 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.673 5.673 13 C 0.034 3.966 14 C 0.114 3.886 15 H 0.103 0.897 16 O -0.537 6.537 17 C 0.024 3.976 18 O -0.295 6.295 19 C 0.182 3.818 20 C -0.213 4.213 21 C -0.048 4.048 22 C -0.164 4.164 23 C -0.033 4.033 24 C -0.066 4.066 25 C 0.261 3.739 26 N -0.415 5.415 27 H 0.004 0.996 28 H 0.029 0.971 29 H 0.090 0.910 30 H 0.260 0.740 31 H 0.328 0.672 32 H 0.070 0.930 33 H 0.029 0.971 34 H 0.372 0.628 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.139 0.861 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.496 7.233 -23.259 24.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.104 3.896 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.303 5.303 13 C -0.097 4.097 14 C 0.054 3.946 15 H 0.121 0.879 16 O -0.341 6.341 17 C -0.051 4.051 18 O -0.207 6.207 19 C 0.132 3.868 20 C -0.232 4.232 21 C -0.067 4.067 22 C -0.182 4.182 23 C -0.053 4.053 24 C -0.071 4.071 25 C -0.054 4.054 26 N -0.091 5.091 27 H 0.023 0.977 28 H 0.048 0.952 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.145 0.855 32 H 0.089 0.911 33 H 0.047 0.953 34 H 0.218 0.782 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.157 0.843 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.129 4.908 -22.987 23.713 hybrid contribution -0.709 1.074 0.884 1.561 sum 2.420 5.981 -22.104 23.026 Atomic orbital electron populations 1.22455 1.00717 0.99336 1.00481 1.19196 0.89565 0.94327 0.86478 0.94968 1.21162 1.30138 1.12507 0.89500 0.91807 1.24951 0.95301 0.95232 0.99098 1.69876 1.37360 1.23314 1.23389 0.86487 0.78425 0.80110 0.82315 1.20742 1.21423 1.19872 1.60695 1.58382 1.08529 1.02649 1.22457 0.99201 0.96450 0.91569 1.21960 0.86777 0.96123 0.89768 0.87950 1.86657 1.18577 1.37170 1.91674 1.23879 1.00950 0.96146 0.84151 1.86192 1.82610 1.37118 1.14768 1.19060 0.91881 0.90344 0.85532 1.21296 1.08677 0.92580 1.00621 1.21215 0.93628 1.00195 0.91645 1.20985 1.04202 0.94132 0.98913 1.21034 0.94707 0.93898 0.95703 1.15334 1.12917 0.85862 0.92947 1.25313 0.93811 0.92369 0.93948 1.81224 1.09048 1.11813 1.07032 0.97722 0.95213 0.89152 0.93064 0.85518 0.91118 0.95297 0.78150 0.90932 0.90593 0.84283 0.84926 0.84822 0.84406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.98 8.94 37.16 0.33 -3.65 16 2 C 0.21 5.17 2.57 -68.86 -0.18 4.99 16 3 H 0.03 0.85 7.80 -51.93 -0.40 0.45 16 4 C -0.49 -13.59 8.84 -34.45 -0.30 -13.90 16 5 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 6 C 0.05 1.50 5.30 -17.82 -0.09 1.41 16 7 N -0.90 -25.42 11.32 55.43 0.63 -24.80 16 8 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.67 -13.76 6.10 -107.95 -0.66 -14.42 16 13 C 0.03 0.53 5.15 -3.83 -0.02 0.51 16 14 C 0.11 1.55 3.45 -26.73 -0.09 1.45 16 15 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 16 O -0.54 -8.33 13.17 -40.06 -0.53 -8.86 16 17 C 0.02 0.25 4.38 37.16 0.16 0.41 16 18 O -0.30 -3.60 9.53 -23.67 -0.23 -3.83 16 19 C 0.18 1.82 6.69 -38.71 -0.26 1.56 16 20 C -0.21 -1.58 9.03 -39.48 -0.36 -1.93 16 21 C -0.05 -0.27 10.03 -39.53 -0.40 -0.66 16 22 C -0.16 -0.85 10.02 -39.63 -0.40 -1.25 16 23 C -0.03 -0.22 9.75 -39.18 -0.38 -0.60 16 24 C -0.07 -0.65 5.75 -106.70 -0.61 -1.26 16 25 C 0.26 3.31 14.87 -22.48 -0.33 2.97 16 26 N -0.42 -6.30 18.54 41.83 0.78 -5.53 16 27 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 28 H 0.03 0.67 8.13 -51.93 -0.42 0.25 16 29 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.33 6.56 8.47 -39.29 -0.33 6.23 16 32 H 0.07 1.09 8.06 -51.93 -0.42 0.67 16 33 H 0.03 0.44 7.44 -51.93 -0.39 0.05 16 34 H 0.37 4.56 9.05 45.56 0.41 4.97 16 35 H 0.07 0.62 7.66 -51.93 -0.40 0.22 16 36 H 0.08 0.65 7.66 -51.93 -0.40 0.25 16 37 H 0.14 0.85 6.30 -52.49 -0.33 0.51 16 38 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 39 H 0.13 0.36 8.06 -52.49 -0.42 -0.06 16 40 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16 LS Contribution 346.82 15.07 5.23 5.23 Total: -1.00 -32.57 346.82 -7.35 -39.92 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -4.62 Total: 5.74 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -2.93 Total: -9.95 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.74 Total: -44.74 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -0.75 Total: -12.68 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.57 -7.35 -39.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869730.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.385 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds