Wall clock time and date at job start Tue Mar 31 2020 06:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 C 1.50695 * 109.47261 * 239.99641 * 2 1 3 5 5 H 1.08002 * 120.00262 * 240.00202 * 4 2 1 6 6 C 1.37881 * 119.99815 * 60.00346 * 4 2 1 7 7 N 1.31517 * 119.99938 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99914 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47346 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.46854 * 120.00026 * 8 6 4 11 11 H 1.48502 * 109.46870 * 239.99430 * 8 6 4 12 12 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 13 13 C 1.46899 * 111.00029 * 275.00154 * 12 2 1 14 14 C 1.52997 * 109.47254 * 179.97438 * 13 12 2 15 15 H 1.09004 * 109.47346 * 305.00031 * 14 13 12 16 16 O 1.42904 * 109.47396 * 64.99580 * 14 13 12 17 17 C 1.52997 * 109.47504 * 184.99955 * 14 13 12 18 18 O 1.42904 * 109.47392 * 175.00085 * 17 14 13 19 19 C 1.35711 * 116.99802 * 179.97438 * 18 17 14 20 20 C 1.38642 * 120.15009 * 0.02562 * 19 18 17 21 21 C 1.38104 * 120.09212 * 179.97438 * 20 19 18 22 22 C 1.38513 * 120.38782 * 0.02562 * 21 20 19 23 23 C 1.37814 * 120.30290 * 0.02562 * 22 21 20 24 24 C 1.39724 * 119.89710 * 359.66063 * 23 22 21 25 25 C 1.43203 * 120.19480 * 180.31872 * 24 23 22 26 26 N 9.06631 * 105.07785 * 108.88363 * 2 1 3 27 27 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 29 29 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 30 30 H 0.97001 * 120.00067 * 180.02562 * 7 6 4 31 31 H 1.00902 * 111.00190 * 151.03855 * 12 2 1 32 32 H 1.09002 * 109.47043 * 299.99792 * 13 12 2 33 33 H 1.09001 * 109.47354 * 59.99854 * 13 12 2 34 34 H 0.96708 * 113.99258 * 60.00195 * 16 14 13 35 35 H 1.09003 * 109.46810 * 294.99909 * 17 14 13 36 36 H 1.08998 * 109.47247 * 54.99778 * 17 14 13 37 37 H 1.08006 * 119.95070 * 359.97438 * 20 19 18 38 38 H 1.08003 * 119.80266 * 179.97438 * 21 20 19 39 39 H 1.08009 * 119.84831 * 180.02562 * 22 21 20 40 40 H 1.07999 * 120.05566 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 3.1464 -2.2871 -3.6037 10 1 1.1659 -1.5867 -4.8160 11 1 3.1466 -0.1875 -4.8164 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5950 -0.5331 3.5745 15 1 1.9691 -1.4081 3.7501 16 8 3.9433 -0.9496 3.3489 17 6 2.5428 0.3850 4.7972 18 8 2.9105 -0.3538 5.9639 19 6 2.9157 0.3185 7.1427 20 6 2.5740 1.6616 7.1798 21 6 2.5791 2.3445 8.3802 22 6 2.9253 1.6957 9.5540 23 6 3.2688 0.3612 9.5355 24 6 3.2614 -0.3433 8.3289 25 6 3.6106 -1.7318 8.3034 26 7 3.8884 -2.8333 8.2830 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.7081 1.1608 -3.4844 31 1 2.9173 -1.1206 1.0287 32 1 2.7588 1.0462 2.1182 33 1 1.0870 0.6163 2.5526 34 1 4.5578 -0.2210 3.1851 35 1 3.2364 1.2144 4.6588 36 1 1.5314 0.7734 4.9170 37 1 2.3033 2.1745 6.2687 38 1 2.3125 3.3909 8.4037 39 1 2.9261 2.2381 10.4880 40 1 3.5377 -0.1409 10.4532 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602869738.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:14 Heat of formation + Delta-G solvation = -35.571338 kcal Electronic energy + Delta-G solvation = -21854.595562 eV Core-core repulsion = 18441.782680 eV Total energy + Delta-G solvation = -3412.812882 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.69833 -38.49470 -37.16949 -36.46011 -35.31162 -32.59096 -31.86622 -30.97907 -30.03804 -28.16919 -25.47111 -24.71876 -24.16396 -22.41709 -21.49397 -19.85225 -19.47578 -18.03457 -16.91919 -16.73314 -16.56498 -15.71472 -15.43564 -15.19814 -14.92582 -14.74998 -14.16114 -13.94430 -13.55867 -13.39912 -13.31019 -13.14355 -12.87752 -12.63942 -12.44323 -11.99513 -11.81185 -11.63944 -11.43098 -11.30772 -10.99273 -10.84324 -10.64825 -10.41067 -10.23817 -10.17656 -9.75614 -9.45212 -8.87451 -8.64754 -8.52600 -7.37850 -6.07660 -4.13881 0.43558 0.94707 2.59214 2.69688 2.73514 3.26542 3.34671 3.39866 3.56561 3.68789 4.30897 4.38437 4.40072 4.45430 4.63230 4.69557 4.86022 4.87886 5.00918 5.12833 5.24186 5.28819 5.35536 5.40518 5.69985 5.74545 5.79731 5.98176 6.00183 6.19225 6.24533 6.79126 6.93380 7.05557 7.15343 7.41147 7.42354 7.71186 7.74409 7.83300 8.21459 8.31129 8.60271 8.96666 9.52553 10.98797 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030738 B = 0.002665 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.695449 B =10504.325478 C =11100.321530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.212 3.788 3 H 0.000 1.000 4 C -0.518 4.518 5 H 0.061 0.939 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.285 1.285 12 N -0.683 5.683 13 C 0.036 3.964 14 C 0.111 3.889 15 H 0.116 0.884 16 O -0.549 6.549 17 C 0.025 3.975 18 O -0.295 6.295 19 C 0.182 3.818 20 C -0.213 4.213 21 C -0.048 4.048 22 C -0.164 4.164 23 C -0.033 4.033 24 C -0.066 4.066 25 C 0.261 3.739 26 N -0.415 5.415 27 H 0.032 0.968 28 H 0.003 0.997 29 H 0.081 0.919 30 H 0.261 0.739 31 H 0.340 0.660 32 H 0.025 0.975 33 H 0.074 0.926 34 H 0.370 0.630 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.139 0.861 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.981 7.357 22.956 24.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.104 3.896 3 H 0.018 0.982 4 C -0.557 4.557 5 H 0.080 0.920 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.211 1.211 12 N -0.316 5.316 13 C -0.095 4.095 14 C 0.051 3.949 15 H 0.134 0.866 16 O -0.353 6.353 17 C -0.050 4.050 18 O -0.207 6.207 19 C 0.132 3.868 20 C -0.232 4.232 21 C -0.067 4.067 22 C -0.182 4.182 23 C -0.053 4.053 24 C -0.070 4.070 25 C -0.055 4.055 26 N -0.091 5.091 27 H 0.052 0.948 28 H 0.022 0.978 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.158 0.842 32 H 0.043 0.957 33 H 0.093 0.907 34 H 0.216 0.784 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.157 0.843 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.485 4.711 22.953 23.563 hybrid contribution 0.962 1.494 -1.284 2.193 sum 3.447 6.205 21.668 22.801 Atomic orbital electron populations 1.21733 0.97851 0.99481 0.99330 1.19125 0.92636 0.92252 0.85549 0.98211 1.21304 1.31428 1.12569 0.90366 0.92045 1.24925 0.95005 0.94993 0.99117 1.69902 1.36679 1.22978 1.23431 0.86449 0.78645 0.79662 0.82723 1.19667 1.20926 1.21083 1.60651 1.33013 1.32292 1.05638 1.22439 1.00507 0.94408 0.92116 1.22110 0.84624 0.98273 0.89860 0.86642 1.86686 1.17973 1.37034 1.93574 1.23853 1.01110 0.95838 0.84217 1.86194 1.82251 1.38781 1.13451 1.19057 0.91954 0.90522 0.85281 1.21293 1.08285 0.93212 1.00386 1.21213 0.93863 1.00007 0.91597 1.20986 1.03951 0.94377 0.98920 1.21035 0.94699 0.94081 0.95524 1.15336 1.12456 0.86609 0.92645 1.25324 0.93759 0.92418 0.93952 1.81236 1.09161 1.11753 1.06960 0.94837 0.97812 0.90008 0.92950 0.84200 0.95716 0.90720 0.78386 0.91151 0.90326 0.84287 0.84924 0.84822 0.84404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 9.19 37.15 0.34 -2.72 16 2 C 0.21 5.24 2.60 -68.87 -0.18 5.06 16 3 H 0.00 0.01 7.80 -51.93 -0.40 -0.40 16 4 C -0.52 -14.12 8.59 -34.44 -0.30 -14.42 16 5 H 0.06 1.67 7.62 -52.49 -0.40 1.27 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.12 11.32 55.43 0.63 -24.50 16 8 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 12 N -0.68 -14.20 6.30 -107.96 -0.68 -14.89 16 13 C 0.04 0.57 5.16 -3.83 -0.02 0.55 16 14 C 0.11 1.52 3.49 -26.73 -0.09 1.43 16 15 H 0.12 1.78 8.14 -51.93 -0.42 1.35 16 16 O -0.55 -8.03 12.83 -40.08 -0.51 -8.54 16 17 C 0.03 0.26 4.37 37.16 0.16 0.43 16 18 O -0.30 -3.62 9.53 -23.69 -0.23 -3.85 16 19 C 0.18 1.83 6.69 -38.71 -0.26 1.57 16 20 C -0.21 -1.59 9.03 -39.48 -0.36 -1.94 16 21 C -0.05 -0.27 10.03 -39.53 -0.40 -0.66 16 22 C -0.16 -0.86 10.02 -39.64 -0.40 -1.26 16 23 C -0.03 -0.22 9.76 -39.18 -0.38 -0.60 16 24 C -0.07 -0.65 5.75 -106.69 -0.61 -1.26 16 25 C 0.26 3.32 14.87 -22.47 -0.33 2.99 16 26 N -0.42 -6.32 18.54 41.84 0.78 -5.55 16 27 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.00 0.06 7.45 -51.93 -0.39 -0.32 16 29 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.34 7.16 7.78 -39.29 -0.31 6.85 16 32 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 33 H 0.07 1.16 7.44 -51.93 -0.39 0.78 16 34 H 0.37 4.05 9.05 45.56 0.41 4.46 16 35 H 0.07 0.59 7.66 -51.93 -0.40 0.19 16 36 H 0.08 0.69 7.66 -51.93 -0.40 0.29 16 37 H 0.14 0.85 6.30 -52.48 -0.33 0.52 16 38 H 0.13 0.42 8.06 -52.48 -0.42 0.00 16 39 H 0.13 0.37 8.06 -52.48 -0.42 -0.06 16 40 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 LS Contribution 345.88 15.07 5.21 5.21 Total: -1.00 -32.37 345.88 -7.32 -39.69 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -4.58 Total: 5.50 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -2.92 Total: -9.26 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 0.72 Total: -44.93 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -0.74 Total: -12.39 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.37 -7.32 -39.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869738.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.119 kcal (2) G-P(sol) polarization free energy of solvation -32.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds