Wall clock time and date at job start Tue Mar 31 2020 06:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 C 1.50695 * 109.47261 * 239.99641 * 2 1 3 5 5 H 1.08002 * 120.00262 * 240.00202 * 4 2 1 6 6 C 1.37881 * 119.99815 * 60.00346 * 4 2 1 7 7 N 1.31517 * 119.99938 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99914 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47346 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.46854 * 120.00026 * 8 6 4 11 11 H 1.48502 * 109.46870 * 239.99430 * 8 6 4 12 12 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 13 13 C 1.46899 * 111.00029 * 275.00154 * 12 2 1 14 14 C 1.52997 * 109.47254 * 179.97438 * 13 12 2 15 15 H 1.09004 * 109.47346 * 305.00031 * 14 13 12 16 16 O 1.42904 * 109.47396 * 64.99580 * 14 13 12 17 17 C 1.52997 * 109.47504 * 184.99955 * 14 13 12 18 18 O 1.42904 * 109.47392 * 175.00085 * 17 14 13 19 19 C 1.35711 * 116.99802 * 179.97438 * 18 17 14 20 20 C 1.38642 * 120.15009 * 0.02562 * 19 18 17 21 21 C 1.38104 * 120.09212 * 179.97438 * 20 19 18 22 22 C 1.38513 * 120.38782 * 0.02562 * 21 20 19 23 23 C 1.37814 * 120.30290 * 0.02562 * 22 21 20 24 24 C 1.39724 * 119.89710 * 359.66063 * 23 22 21 25 25 C 1.43203 * 120.19480 * 180.31872 * 24 23 22 26 26 N 9.06631 * 105.07785 * 108.88363 * 2 1 3 27 27 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 29 29 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 30 30 H 0.97001 * 120.00067 * 180.02562 * 7 6 4 31 31 H 1.00902 * 111.00190 * 151.03855 * 12 2 1 32 32 H 1.09002 * 109.47043 * 299.99792 * 13 12 2 33 33 H 1.09001 * 109.47354 * 59.99854 * 13 12 2 34 34 H 0.96708 * 113.99258 * 60.00195 * 16 14 13 35 35 H 1.09003 * 109.46810 * 294.99909 * 17 14 13 36 36 H 1.08998 * 109.47247 * 54.99778 * 17 14 13 37 37 H 1.08006 * 119.95070 * 359.97438 * 20 19 18 38 38 H 1.08003 * 119.80266 * 179.97438 * 21 20 19 39 39 H 1.08009 * 119.84831 * 180.02562 * 22 21 20 40 40 H 1.07999 * 120.05566 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 3.1464 -2.2871 -3.6037 10 1 1.1659 -1.5867 -4.8160 11 1 3.1466 -0.1875 -4.8164 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5950 -0.5331 3.5745 15 1 1.9691 -1.4081 3.7501 16 8 3.9433 -0.9496 3.3489 17 6 2.5428 0.3850 4.7972 18 8 2.9105 -0.3538 5.9639 19 6 2.9157 0.3185 7.1427 20 6 2.5740 1.6616 7.1798 21 6 2.5791 2.3445 8.3802 22 6 2.9253 1.6957 9.5540 23 6 3.2688 0.3612 9.5355 24 6 3.2614 -0.3433 8.3289 25 6 3.6106 -1.7318 8.3034 26 7 3.8884 -2.8333 8.2830 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.7081 1.1608 -3.4844 31 1 2.9173 -1.1206 1.0287 32 1 2.7588 1.0462 2.1182 33 1 1.0870 0.6163 2.5526 34 1 4.5578 -0.2210 3.1851 35 1 3.2364 1.2144 4.6588 36 1 1.5314 0.7734 4.9170 37 1 2.3033 2.1745 6.2687 38 1 2.3125 3.3909 8.4037 39 1 2.9261 2.2381 10.4880 40 1 3.5377 -0.1409 10.4532 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602869738.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:14 Heat of formation + Delta-G solvation = -59.084865 kcal Electronic energy + Delta-G solvation = -21855.615185 eV Core-core repulsion = 18441.782680 eV Total energy + Delta-G solvation = -3413.832505 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.38608 -39.42996 -38.21990 -37.40585 -36.93835 -34.42538 -32.56440 -31.97914 -30.99887 -29.62127 -27.38512 -25.99867 -24.85201 -23.23302 -22.52354 -21.71633 -20.19054 -18.91488 -18.45612 -17.72954 -17.56873 -16.98941 -16.59049 -16.24534 -15.91314 -15.64190 -15.36876 -15.16680 -14.92319 -14.70697 -14.35085 -14.12973 -14.07337 -13.72915 -13.44552 -13.29269 -13.10970 -12.86430 -12.68175 -12.53237 -12.30592 -12.23063 -12.19795 -12.07806 -11.96549 -11.71629 -11.07633 -10.85213 -10.59088 -10.00876 -9.26482 -9.07535 -8.15845 -6.29155 -0.16524 0.42098 1.39435 1.42100 1.53613 1.64993 1.92992 1.97628 2.40461 2.89615 2.93056 3.12863 3.38087 3.47842 3.84418 3.90800 3.98673 4.07485 4.13595 4.26456 4.36890 4.43699 4.46770 4.52972 4.68136 4.83869 4.89265 5.05044 5.07204 5.20499 5.22040 5.35887 5.46277 5.51698 5.65438 5.76258 5.85207 6.21917 6.24490 6.44667 6.51147 6.74027 6.79429 6.97314 7.41333 8.89804 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030738 B = 0.002665 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.695449 B =10504.325478 C =11100.321530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.217 3.783 3 H -0.023 1.023 4 C -0.539 4.539 5 H 0.054 0.946 6 C 0.015 3.985 7 N -0.915 5.915 8 Si 0.960 3.040 9 H -0.271 1.271 10 H -0.280 1.280 11 H -0.278 1.278 12 N -0.690 5.690 13 C 0.039 3.961 14 C 0.120 3.880 15 H 0.093 0.907 16 O -0.570 6.570 17 C 0.034 3.966 18 O -0.326 6.326 19 C 0.160 3.840 20 C -0.216 4.216 21 C -0.038 4.038 22 C -0.154 4.154 23 C -0.029 4.029 24 C -0.095 4.095 25 C 0.280 3.720 26 N -0.477 5.477 27 H 0.024 0.976 28 H 0.028 0.972 29 H 0.058 0.942 30 H 0.263 0.737 31 H 0.336 0.664 32 H 0.035 0.965 33 H 0.081 0.919 34 H 0.385 0.615 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.153 0.847 38 H 0.165 0.835 39 H 0.168 0.832 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.006 9.506 24.501 26.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.108 3.892 3 H -0.006 1.006 4 C -0.578 4.578 5 H 0.072 0.928 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.785 3.215 9 H -0.195 1.195 10 H -0.205 1.205 11 H -0.204 1.204 12 N -0.321 5.321 13 C -0.091 4.091 14 C 0.060 3.940 15 H 0.111 0.889 16 O -0.376 6.376 17 C -0.041 4.041 18 O -0.239 6.239 19 C 0.112 3.888 20 C -0.235 4.235 21 C -0.057 4.057 22 C -0.171 4.171 23 C -0.049 4.049 24 C -0.099 4.099 25 C -0.034 4.034 26 N -0.154 5.154 27 H 0.043 0.957 28 H 0.047 0.953 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.153 0.847 32 H 0.054 0.946 33 H 0.100 0.900 34 H 0.234 0.766 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.171 0.829 38 H 0.183 0.817 39 H 0.185 0.815 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.516 6.873 24.522 25.591 hybrid contribution 0.949 0.944 -1.651 2.125 sum 3.465 7.817 22.871 24.417 Atomic orbital electron populations 1.21568 0.97655 0.98811 0.99370 1.18918 0.92754 0.90924 0.86559 1.00572 1.21619 1.31660 1.12632 0.91860 0.92791 1.25679 0.95163 0.95684 1.01874 1.70006 1.37336 1.23955 1.24169 0.85481 0.78151 0.78607 0.79225 1.19507 1.20545 1.20356 1.60540 1.32877 1.33212 1.05509 1.22480 1.01375 0.94071 0.91176 1.21849 0.83819 0.97757 0.90527 0.88918 1.86643 1.18662 1.38564 1.93763 1.23696 1.02928 0.94981 0.82542 1.86118 1.83082 1.40191 1.14511 1.19284 0.93514 0.91690 0.84351 1.21517 1.07970 0.92032 1.01955 1.21667 0.91832 1.01383 0.90780 1.21417 1.01845 0.93593 1.00292 1.21333 0.93825 0.94805 0.94916 1.15641 1.14789 0.85329 0.94151 1.25945 0.92188 0.92994 0.92241 1.81226 1.11747 1.13548 1.08906 0.95698 0.95314 0.92360 0.92748 0.84652 0.94642 0.90036 0.76636 0.88783 0.88473 0.82914 0.81727 0.81494 0.82595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 9.19 71.98 0.66 -4.99 16 2 C 0.22 10.83 2.60 44.16 0.11 10.95 16 3 H -0.02 -1.25 7.80 -2.39 -0.02 -1.27 16 4 C -0.54 -29.75 8.59 25.60 0.22 -29.53 16 5 H 0.05 2.98 7.62 -2.91 -0.02 2.96 16 6 C 0.02 0.85 5.30 84.66 0.45 1.30 16 7 N -0.92 -51.95 11.32 21.45 0.24 -51.71 16 8 Si 0.96 43.59 29.54 68.60 2.03 45.62 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 12 N -0.69 -28.81 6.30 -495.47 -3.12 -31.93 16 13 C 0.04 1.21 5.16 86.30 0.44 1.66 16 14 C 0.12 3.24 3.49 30.59 0.11 3.34 16 15 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 16 O -0.57 -16.66 12.83 -144.34 -1.85 -18.51 16 17 C 0.03 0.65 4.37 71.98 0.31 0.96 16 18 O -0.33 -7.86 9.53 -85.68 -0.82 -8.68 16 19 C 0.16 3.03 6.69 22.83 0.15 3.18 16 20 C -0.22 -2.56 9.03 22.33 0.20 -2.36 16 21 C -0.04 -0.26 10.03 22.30 0.22 -0.03 16 22 C -0.15 -0.95 10.02 22.23 0.22 -0.73 16 23 C -0.03 -0.31 9.76 22.53 0.22 -0.09 16 24 C -0.09 -1.78 5.75 -21.21 -0.12 -1.91 16 25 C 0.28 7.35 14.87 88.33 1.31 8.67 16 26 N -0.48 -15.30 18.54 19.01 0.35 -14.95 16 27 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.03 1.21 7.45 -2.39 -0.02 1.19 16 29 H 0.06 3.12 6.07 -2.39 -0.01 3.11 16 30 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 31 H 0.34 14.36 7.78 -89.69 -0.70 13.66 16 32 H 0.04 1.05 8.06 -2.39 -0.02 1.03 16 33 H 0.08 2.42 7.44 -2.39 -0.02 2.40 16 34 H 0.38 8.21 9.05 -74.05 -0.67 7.54 16 35 H 0.09 1.34 7.66 -2.39 -0.02 1.32 16 36 H 0.10 1.48 7.66 -2.39 -0.02 1.46 16 37 H 0.15 1.32 6.30 -2.91 -0.02 1.30 16 38 H 0.17 0.11 8.06 -2.91 -0.02 0.08 16 39 H 0.17 -0.02 8.06 -2.91 -0.02 -0.04 16 40 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 Total: -1.00 -72.33 345.88 1.06 -71.27 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -0.29 Total: 18.47 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: 4.52 Total: -9.58 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -2.53 Total: -98.59 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -2.67 Total: -27.18 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -72.33 1.06 -71.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869738.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.181 kcal (2) G-P(sol) polarization free energy of solvation -72.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds