Wall clock time and date at job start Tue Mar 31 2020 06:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09008 * 109.46916 * 2 1 4 4 N 1.46898 * 109.47574 * 119.99953 * 2 1 3 5 5 C 1.46904 * 110.99957 * 271.36040 * 4 2 1 6 6 H 1.08995 * 109.46913 * 340.65271 * 5 4 2 7 7 C 1.52998 * 109.47258 * 100.65829 * 5 4 2 8 8 C 1.52998 * 109.46830 * 220.65701 * 5 4 2 9 9 C 1.50700 * 109.47325 * 64.99759 * 8 5 4 10 10 H 1.07997 * 119.99893 * 0.02562 * 9 8 5 11 11 C 1.37873 * 120.00175 * 179.97438 * 9 8 5 12 12 N 1.31515 * 119.99934 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00221 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47058 * 59.99530 * 13 11 9 15 15 H 1.48497 * 109.47391 * 180.02562 * 13 11 9 16 16 H 1.48509 * 109.46978 * 300.00000 * 13 11 9 17 17 C 1.50697 * 109.47180 * 240.00126 * 2 1 3 18 18 C 1.38655 * 119.76950 * 279.72582 * 17 2 1 19 19 C 1.37758 * 120.39672 * 179.71896 * 18 17 2 20 20 C 1.39542 * 119.72940 * 0.54991 * 19 18 17 21 21 N 1.36159 * 133.70793 * 179.74716 * 20 19 18 22 22 C 1.30617 * 108.71851 * 179.97438 * 21 20 19 23 23 O 1.35184 * 124.92872 * 180.02562 * 22 21 20 24 24 O 1.34380 * 110.13415 * 0.02562 * 22 21 20 25 25 C 1.35261 * 108.19615 * 0.02562 * 24 22 21 26 26 C 1.38005 * 119.77133 * 99.99992 * 17 2 1 27 27 H 1.08998 * 109.47615 * 67.31581 * 1 2 3 28 28 H 1.09005 * 109.47093 * 187.31907 * 1 2 3 29 29 H 1.09002 * 109.47568 * 307.32075 * 1 2 3 30 30 H 1.00898 * 110.99971 * 147.39964 * 4 2 1 31 31 H 1.09001 * 109.47148 * 293.20592 * 7 5 4 32 32 H 1.08996 * 109.47236 * 53.20482 * 7 5 4 33 33 H 1.09004 * 109.47168 * 173.20614 * 7 5 4 34 34 H 1.08996 * 109.47623 * 185.00007 * 8 5 4 35 35 H 1.09000 * 109.47392 * 304.99911 * 8 5 4 36 36 H 0.97010 * 119.99801 * 179.97438 * 12 11 9 37 37 H 1.07994 * 119.79992 * 359.97438 * 18 17 2 38 38 H 1.07996 * 120.13471 * 180.25419 * 19 18 17 39 39 H 0.96697 * 114.00583 * 359.97438 * 23 22 21 40 40 H 1.08003 * 120.05278 * 0.02562 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.1645 0.2414 2.3242 6 1 2.2116 1.2622 1.9451 7 6 0.9639 0.1004 3.2619 8 6 3.4500 -0.0781 3.0899 9 6 4.6405 0.1790 2.2024 10 1 4.4948 0.5350 1.1932 11 6 5.9157 -0.0394 2.6790 12 7 6.0931 -0.4725 3.9080 13 14 7.3914 0.2800 1.5791 14 1 7.4018 1.7065 1.1667 15 1 8.6390 -0.0302 2.3222 16 1 7.3063 -0.5832 0.3736 17 6 2.0323 -0.7104 -1.2304 18 6 2.0700 -2.0961 -1.2581 19 6 2.5214 -2.7589 -2.3783 20 6 2.9536 -2.0295 -3.4867 21 7 3.4463 -2.3768 -4.7076 22 6 3.6995 -1.2877 -5.3827 23 8 4.1998 -1.2539 -6.6381 24 8 3.3906 -0.2057 -4.6480 25 6 2.9203 -0.6275 -3.4519 26 6 2.4568 0.0230 -2.3197 27 1 -0.3634 0.3963 -0.9481 28 1 -0.3633 -1.0193 0.1309 29 1 -0.3634 0.6230 0.8172 30 1 2.8884 -1.1701 1.0117 31 1 0.0630 0.4431 2.7529 32 1 0.8453 -0.9453 3.5456 33 1 1.1279 0.7029 4.1554 34 1 3.5129 0.5553 3.9746 35 1 3.4419 -1.1252 3.3926 36 1 6.9903 -0.6265 4.2432 37 1 1.7398 -2.6593 -0.3979 38 1 2.5452 -3.8384 -2.3968 39 1 4.3651 -2.1270 -7.0193 40 1 2.4291 1.1022 -2.2892 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602991601.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:21 Heat of formation + Delta-G solvation = -7.136666 kcal Electronic energy + Delta-G solvation = -22897.043994 eV Core-core repulsion = 19485.464132 eV Total energy + Delta-G solvation = -3411.579862 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.31106 -39.08432 -38.22521 -36.56159 -34.71078 -33.14668 -31.83725 -30.66625 -28.47699 -28.10707 -27.23229 -23.98490 -23.49515 -22.99377 -22.07306 -20.73258 -19.60077 -19.02854 -18.00746 -17.28651 -17.05091 -16.37079 -15.53138 -15.02033 -14.74956 -14.40585 -14.26593 -13.95432 -13.90070 -13.59852 -12.97406 -12.70959 -12.38117 -12.09890 -12.00342 -11.88762 -11.63737 -11.62121 -11.32028 -11.03460 -10.87158 -10.79501 -10.61833 -10.52136 -10.39587 -10.19349 -9.23826 -9.12874 -8.76333 -8.42255 -8.15616 -7.76097 -6.05482 -4.08884 0.73661 1.26062 1.46918 2.33704 3.29537 3.34450 3.37430 3.43377 3.66854 4.35014 4.41342 4.58060 4.83878 4.91254 5.09747 5.23220 5.31539 5.38566 5.60538 5.62761 5.68891 5.90458 5.94839 5.97878 6.05077 6.12090 6.21758 6.29622 6.36195 6.45539 6.53532 6.56199 6.64973 6.81701 6.89587 6.95878 7.46421 7.50375 7.60195 7.92969 8.00880 8.20422 8.33182 8.97548 9.56212 11.05147 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013108 B = 0.005122 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.622159 B = 5465.524983 C = 7020.617571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.125 3.875 3 H 0.055 0.945 4 N -0.675 5.675 5 C 0.086 3.914 6 H 0.039 0.961 7 C -0.135 4.135 8 C 0.015 3.985 9 C -0.525 4.525 10 H 0.051 0.949 11 C 0.064 3.936 12 N -0.890 5.890 13 Si 0.885 3.115 14 H -0.278 1.278 15 H -0.286 1.286 16 H -0.277 1.277 17 C -0.054 4.054 18 C -0.087 4.087 19 C -0.071 4.071 20 C 0.041 3.959 21 N -0.522 5.522 22 C 0.440 3.560 23 O -0.418 6.418 24 O -0.204 6.204 25 C 0.003 3.997 26 C -0.080 4.080 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.358 0.642 31 H 0.039 0.961 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.022 0.978 35 H 0.025 0.975 36 H 0.262 0.738 37 H 0.149 0.851 38 H 0.136 0.864 39 H 0.439 0.561 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.329 -2.349 -14.899 17.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.015 3.985 3 H 0.073 0.927 4 N -0.310 5.310 5 C -0.023 4.023 6 H 0.057 0.943 7 C -0.193 4.193 8 C -0.023 4.023 9 C -0.564 4.564 10 H 0.069 0.931 11 C -0.138 4.138 12 N -0.529 5.529 13 Si 0.713 3.287 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.055 4.055 18 C -0.106 4.106 19 C -0.090 4.090 20 C -0.070 4.070 21 N -0.273 5.273 22 C 0.190 3.810 23 O -0.220 6.220 24 O -0.098 6.098 25 C -0.045 4.045 26 C -0.099 4.099 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.180 0.820 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.040 0.960 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.167 0.833 38 H 0.154 0.846 39 H 0.298 0.702 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.689 -2.525 -14.839 17.901 hybrid contribution 1.966 0.907 -1.073 2.416 sum -7.723 -1.619 -15.911 17.760 Atomic orbital electron populations 1.21849 0.94027 1.02566 1.00694 1.20540 0.95552 0.95609 0.86803 0.92724 1.60822 1.37050 1.29376 1.03741 1.21728 0.96283 0.93180 0.91110 0.94336 1.21853 0.97456 1.01414 0.98540 1.19408 0.89697 0.97708 0.95474 1.21129 0.91217 1.44968 0.99050 0.93104 1.24950 0.98907 0.95061 0.94895 1.69946 1.22129 1.45457 1.15328 0.86764 0.82342 0.78765 0.80815 1.20341 1.21202 1.20218 1.19937 0.97208 0.93881 0.94503 1.21059 0.98087 0.93779 0.97683 1.20271 0.98644 1.00097 0.90018 1.19440 1.03061 0.91351 0.93107 1.71127 1.24814 1.25232 1.06150 1.22200 0.92373 0.79886 0.86537 1.84633 1.78835 1.38669 1.19863 1.84335 1.68136 1.33396 1.23960 1.19933 1.04792 0.94117 0.85696 1.19684 1.00989 1.00409 0.88848 0.93268 0.91811 0.92220 0.82033 0.94243 0.92717 0.93469 0.96017 0.95708 0.92874 0.83285 0.84570 0.70155 0.84760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 9.42 37.15 0.35 -1.33 16 2 C 0.13 1.86 2.80 -68.87 -0.19 1.67 16 3 H 0.05 0.86 7.11 -51.92 -0.37 0.50 16 4 N -0.68 -11.76 5.57 -100.96 -0.56 -12.33 16 5 C 0.09 1.67 2.64 -67.71 -0.18 1.50 16 6 H 0.04 0.77 7.15 -51.93 -0.37 0.40 16 7 C -0.13 -2.26 9.52 37.16 0.35 -1.91 16 8 C 0.01 0.36 4.44 -27.88 -0.12 0.23 16 9 C -0.53 -14.08 8.15 -34.44 -0.28 -14.36 16 10 H 0.05 1.34 7.74 -52.49 -0.41 0.93 16 11 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 12 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 13 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 C -0.05 -0.79 4.72 -104.55 -0.49 -1.28 16 18 C -0.09 -1.19 8.89 -39.60 -0.35 -1.55 16 19 C -0.07 -0.98 10.10 -39.27 -0.40 -1.37 16 20 C 0.04 0.63 7.23 -84.69 -0.61 0.01 16 21 N -0.52 -7.44 11.38 -12.80 -0.15 -7.59 16 22 C 0.44 5.74 9.54 52.25 0.50 6.24 16 23 O -0.42 -3.69 13.62 -40.54 -0.55 -4.25 16 24 O -0.20 -3.08 10.78 -20.50 -0.22 -3.30 16 25 C 0.00 0.05 7.42 -38.69 -0.29 -0.24 16 26 C -0.08 -1.17 9.67 -39.55 -0.38 -1.55 16 27 H 0.05 0.55 8.13 -51.93 -0.42 0.13 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.75 6.62 -51.93 -0.34 0.40 16 30 H 0.36 7.01 6.46 -39.29 -0.25 6.75 16 31 H 0.04 0.58 6.57 -51.93 -0.34 0.24 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.15 1.91 7.68 -52.49 -0.40 1.51 16 38 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.44 1.41 9.06 45.56 0.41 1.82 16 40 H 0.13 1.75 8.03 -52.48 -0.42 1.32 16 LS Contribution 337.09 15.07 5.08 5.08 Total: -1.00 -31.38 337.09 -7.47 -38.86 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -4.59 Total: 4.59 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -2.20 Total: -12.24 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.03 Total: -45.26 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.77 Total: -7.55 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.38 -7.47 -38.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602991601.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.719 kcal (2) G-P(sol) polarization free energy of solvation -31.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds