Wall clock time and date at job start Tue Mar 31 2020 06:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09008 * 109.46916 * 2 1 4 4 N 1.46898 * 109.47574 * 119.99953 * 2 1 3 5 5 C 1.46904 * 110.99957 * 271.36040 * 4 2 1 6 6 H 1.08995 * 109.46913 * 340.65271 * 5 4 2 7 7 C 1.52998 * 109.47258 * 100.65829 * 5 4 2 8 8 C 1.52998 * 109.46830 * 220.65701 * 5 4 2 9 9 C 1.50700 * 109.47325 * 64.99759 * 8 5 4 10 10 H 1.07997 * 119.99893 * 0.02562 * 9 8 5 11 11 C 1.37873 * 120.00175 * 179.97438 * 9 8 5 12 12 N 1.31515 * 119.99934 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00221 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47058 * 59.99530 * 13 11 9 15 15 H 1.48497 * 109.47391 * 180.02562 * 13 11 9 16 16 H 1.48509 * 109.46978 * 300.00000 * 13 11 9 17 17 C 1.50697 * 109.47180 * 240.00126 * 2 1 3 18 18 C 1.38655 * 119.76950 * 279.72582 * 17 2 1 19 19 C 1.37758 * 120.39672 * 179.71896 * 18 17 2 20 20 C 1.39542 * 119.72940 * 0.54991 * 19 18 17 21 21 N 1.36159 * 133.70793 * 179.74716 * 20 19 18 22 22 C 1.30617 * 108.71851 * 179.97438 * 21 20 19 23 23 O 1.35184 * 124.92872 * 180.02562 * 22 21 20 24 24 O 1.34380 * 110.13415 * 0.02562 * 22 21 20 25 25 C 1.35261 * 108.19615 * 0.02562 * 24 22 21 26 26 C 1.38005 * 119.77133 * 99.99992 * 17 2 1 27 27 H 1.08998 * 109.47615 * 67.31581 * 1 2 3 28 28 H 1.09005 * 109.47093 * 187.31907 * 1 2 3 29 29 H 1.09002 * 109.47568 * 307.32075 * 1 2 3 30 30 H 1.00898 * 110.99971 * 147.39964 * 4 2 1 31 31 H 1.09001 * 109.47148 * 293.20592 * 7 5 4 32 32 H 1.08996 * 109.47236 * 53.20482 * 7 5 4 33 33 H 1.09004 * 109.47168 * 173.20614 * 7 5 4 34 34 H 1.08996 * 109.47623 * 185.00007 * 8 5 4 35 35 H 1.09000 * 109.47392 * 304.99911 * 8 5 4 36 36 H 0.97010 * 119.99801 * 179.97438 * 12 11 9 37 37 H 1.07994 * 119.79992 * 359.97438 * 18 17 2 38 38 H 1.07996 * 120.13471 * 180.25419 * 19 18 17 39 39 H 0.96697 * 114.00583 * 359.97438 * 23 22 21 40 40 H 1.08003 * 120.05278 * 0.02562 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.1645 0.2414 2.3242 6 1 2.2116 1.2622 1.9451 7 6 0.9639 0.1004 3.2619 8 6 3.4500 -0.0781 3.0899 9 6 4.6405 0.1790 2.2024 10 1 4.4948 0.5350 1.1932 11 6 5.9157 -0.0394 2.6790 12 7 6.0931 -0.4725 3.9080 13 14 7.3914 0.2800 1.5791 14 1 7.4018 1.7065 1.1667 15 1 8.6390 -0.0302 2.3222 16 1 7.3063 -0.5832 0.3736 17 6 2.0323 -0.7104 -1.2304 18 6 2.0700 -2.0961 -1.2581 19 6 2.5214 -2.7589 -2.3783 20 6 2.9536 -2.0295 -3.4867 21 7 3.4463 -2.3768 -4.7076 22 6 3.6995 -1.2877 -5.3827 23 8 4.1998 -1.2539 -6.6381 24 8 3.3906 -0.2057 -4.6480 25 6 2.9203 -0.6275 -3.4519 26 6 2.4568 0.0230 -2.3197 27 1 -0.3634 0.3963 -0.9481 28 1 -0.3633 -1.0193 0.1309 29 1 -0.3634 0.6230 0.8172 30 1 2.8884 -1.1701 1.0117 31 1 0.0630 0.4431 2.7529 32 1 0.8453 -0.9453 3.5456 33 1 1.1279 0.7029 4.1554 34 1 3.5129 0.5553 3.9746 35 1 3.4419 -1.1252 3.3926 36 1 6.9903 -0.6265 4.2432 37 1 1.7398 -2.6593 -0.3979 38 1 2.5452 -3.8384 -2.3968 39 1 4.3651 -2.1270 -7.0193 40 1 2.4291 1.1022 -2.2892 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602991601.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:20 Heat of formation + Delta-G solvation = -31.376161 kcal Electronic energy + Delta-G solvation = -22898.095098 eV Core-core repulsion = 19485.464132 eV Total energy + Delta-G solvation = -3412.630966 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.37314 -40.18193 -39.11909 -37.92764 -35.91084 -34.87599 -33.41063 -31.76324 -29.74608 -29.38375 -28.94935 -25.09721 -24.91545 -24.53049 -23.14989 -21.87896 -21.14613 -19.97351 -19.05431 -18.48604 -18.33553 -18.17600 -16.88947 -16.38730 -16.13238 -15.77079 -15.62200 -14.99580 -14.85982 -14.77045 -14.41725 -14.02258 -13.71796 -13.59060 -13.30859 -13.22951 -13.16258 -12.95759 -12.70166 -12.63092 -12.49584 -12.24802 -11.98044 -11.91305 -11.83442 -11.56485 -11.12592 -10.95903 -10.57351 -9.85365 -9.23006 -9.19459 -8.19856 -6.28762 -0.32397 0.15630 0.54450 1.28188 1.36068 1.36965 1.44228 2.37539 2.41499 2.57354 3.12437 3.33289 3.41111 3.66091 3.89491 4.02720 4.15388 4.27669 4.37959 4.53061 4.60085 4.66459 4.75255 4.79642 4.87015 4.96374 5.00498 5.04537 5.15435 5.23896 5.30472 5.39077 5.44081 5.52863 5.55882 5.57291 5.62977 5.87120 5.95079 6.22968 6.45479 6.55784 6.65485 6.87189 7.39940 8.91268 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013108 B = 0.005122 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.622159 B = 5465.524983 C = 7020.617571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.126 3.874 3 H 0.046 0.954 4 N -0.669 5.669 5 C 0.096 3.904 6 H 0.034 0.966 7 C -0.127 4.127 8 C 0.021 3.979 9 C -0.529 4.529 10 H 0.054 0.946 11 C 0.012 3.988 12 N -0.926 5.926 13 Si 0.946 3.054 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.273 1.273 17 C -0.063 4.063 18 C -0.086 4.086 19 C -0.073 4.073 20 C 0.026 3.974 21 N -0.534 5.534 22 C 0.448 3.552 23 O -0.406 6.406 24 O -0.218 6.218 25 C -0.016 4.016 26 C -0.085 4.085 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.344 0.656 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.045 0.955 34 H -0.006 1.006 35 H 0.000 1.000 36 H 0.262 0.738 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.461 0.539 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.907 -2.353 -16.580 19.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.017 3.983 3 H 0.064 0.936 4 N -0.301 5.301 5 C -0.014 4.014 6 H 0.052 0.948 7 C -0.185 4.185 8 C -0.016 4.016 9 C -0.567 4.567 10 H 0.072 0.928 11 C -0.187 4.187 12 N -0.567 5.567 13 Si 0.772 3.228 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.198 1.198 17 C -0.064 4.064 18 C -0.105 4.105 19 C -0.092 4.092 20 C -0.084 4.084 21 N -0.286 5.286 22 C 0.198 3.802 23 O -0.211 6.211 24 O -0.113 6.113 25 C -0.064 4.064 26 C -0.104 4.104 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.164 0.836 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.013 0.987 35 H 0.019 0.981 36 H 0.071 0.929 37 H 0.175 0.825 38 H 0.173 0.827 39 H 0.326 0.674 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.278 -2.539 -16.555 19.651 hybrid contribution 2.160 0.898 -0.645 2.426 sum -8.118 -1.641 -17.200 19.091 Atomic orbital electron populations 1.21790 0.91857 1.03019 1.01732 1.20595 0.97107 0.94782 0.85847 0.93569 1.60904 1.35967 1.28871 1.04378 1.21541 0.94863 0.93222 0.91750 0.94763 1.21765 0.97191 1.01445 0.98062 1.19289 0.92029 0.95476 0.94826 1.21471 0.92053 1.43906 0.99311 0.92798 1.25726 1.01766 0.95114 0.96072 1.70065 1.22695 1.46896 1.16995 0.85790 0.79162 0.78772 0.79053 1.19706 1.20889 1.19844 1.19928 0.97833 0.94248 0.94355 1.21174 0.97792 0.93597 0.97968 1.20504 0.98127 1.01094 0.89517 1.19771 1.03233 0.91585 0.93823 1.71133 1.25830 1.25548 1.06054 1.22473 0.91241 0.79144 0.87294 1.84673 1.77817 1.40863 1.17789 1.84302 1.68504 1.34338 1.24166 1.20097 1.05691 0.94505 0.86126 1.19827 1.00769 1.01055 0.88751 0.91655 0.91427 0.91948 0.83589 0.91535 0.92905 0.93618 0.98733 0.98129 0.92878 0.82478 0.82668 0.67444 0.83726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 9.42 71.98 0.68 -2.19 16 2 C 0.13 3.59 2.80 44.17 0.12 3.71 16 3 H 0.05 1.41 7.11 -2.38 -0.02 1.39 16 4 N -0.67 -22.73 5.57 -473.33 -2.64 -25.37 16 5 C 0.10 3.68 2.64 44.91 0.12 3.80 16 6 H 0.03 1.35 7.15 -2.39 -0.02 1.33 16 7 C -0.13 -4.09 9.52 71.98 0.69 -3.40 16 8 C 0.02 1.06 4.44 29.85 0.13 1.20 16 9 C -0.53 -28.58 8.15 25.60 0.21 -28.37 16 10 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 11 C 0.01 0.66 5.46 84.65 0.46 1.13 16 12 N -0.93 -55.18 13.29 21.45 0.28 -54.90 16 13 Si 0.95 44.29 29.54 68.60 2.03 46.31 16 14 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 15 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 16 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 17 C -0.06 -1.75 4.72 -19.82 -0.09 -1.84 16 18 C -0.09 -2.26 8.89 22.26 0.20 -2.07 16 19 C -0.07 -1.92 10.10 22.47 0.23 -1.69 16 20 C 0.03 0.78 7.23 39.28 0.28 1.06 16 21 N -0.53 -14.48 11.38 -422.74 -4.81 -19.28 16 22 C 0.45 11.01 9.54 130.42 1.24 12.26 16 23 O -0.41 -6.26 13.62 -62.37 -0.85 -7.11 16 24 O -0.22 -6.38 10.78 9.31 0.10 -6.28 16 25 C -0.02 -0.47 7.42 22.84 0.17 -0.30 16 26 C -0.08 -2.40 9.67 22.29 0.22 -2.18 16 27 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 28 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.06 1.38 6.62 -2.39 -0.02 1.37 16 30 H 0.34 13.40 6.46 -89.70 -0.58 12.82 16 31 H 0.07 1.79 6.57 -2.39 -0.02 1.77 16 32 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 34 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 35 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 36 H 0.26 14.86 8.31 -92.70 -0.77 14.09 16 37 H 0.16 3.81 7.68 -2.91 -0.02 3.79 16 38 H 0.16 3.34 8.06 -2.91 -0.02 3.31 16 39 H 0.46 1.78 9.06 -74.06 -0.67 1.11 16 40 H 0.14 3.63 8.03 -2.91 -0.02 3.61 16 Total: -1.00 -67.02 337.09 -1.41 -68.42 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -0.17 Total: 17.10 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: 4.65 Total: -18.90 kcal Atomic # 7 Polarization: -92.39 SS G_CDS: -7.16 Total: -99.55 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.75 Total: -13.39 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -67.02 -1.41 -68.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602991601.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.046 kcal (2) G-P(sol) polarization free energy of solvation -67.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds