Wall clock time and date at job start Tue Mar 31 2020 06:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47143 * 2 1 4 4 C 1.53002 * 109.46739 * 239.99940 * 2 1 3 5 5 C 1.50703 * 109.47036 * 174.99984 * 4 2 1 6 6 H 1.08006 * 119.99701 * 359.97438 * 5 4 2 7 7 C 1.37868 * 120.00379 * 180.02562 * 5 4 2 8 8 N 1.31527 * 119.99875 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00573 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46885 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47164 * 119.99891 * 9 7 5 12 12 H 1.48503 * 109.47546 * 240.00160 * 9 7 5 13 13 N 1.46895 * 109.47234 * 120.00234 * 2 1 3 14 14 C 1.46901 * 111.00019 * 276.06397 * 13 2 1 15 15 H 1.08997 * 109.47282 * 32.99813 * 14 13 2 16 16 C 1.52998 * 109.47345 * 153.00666 * 14 13 2 17 17 C 1.50697 * 109.47142 * 273.00383 * 14 13 2 18 18 C 1.38661 * 119.76945 * 319.72550 * 17 14 13 19 19 C 1.37758 * 120.39531 * 179.73709 * 18 17 14 20 20 C 1.39546 * 119.73575 * 0.51495 * 19 18 17 21 21 N 1.36148 * 133.71406 * 179.76215 * 20 19 18 22 22 C 1.30621 * 108.72073 * 180.02562 * 21 20 19 23 23 O 1.35179 * 124.93385 * 180.02562 * 22 21 20 24 24 O 1.34380 * 110.13479 * 359.97438 * 22 21 20 25 25 C 1.35270 * 108.19016 * 0.02562 * 24 22 21 26 26 C 1.38009 * 119.77452 * 139.99743 * 17 14 13 27 27 H 1.09005 * 109.46845 * 300.82026 * 1 2 3 28 28 H 1.08991 * 109.47296 * 60.82030 * 1 2 3 29 29 H 1.08996 * 109.46895 * 180.82444 * 1 2 3 30 30 H 1.08995 * 109.47227 * 295.00039 * 4 2 1 31 31 H 1.08994 * 109.47156 * 54.99876 * 4 2 1 32 32 H 0.96997 * 119.99764 * 180.02562 * 8 7 5 33 33 H 1.00904 * 111.00150 * 152.11055 * 13 2 1 34 34 H 1.09007 * 109.47041 * 180.69769 * 16 14 13 35 35 H 1.09007 * 109.46521 * 300.69300 * 16 14 13 36 36 H 1.08992 * 109.47642 * 60.69209 * 16 14 13 37 37 H 1.07999 * 119.80305 * 359.97438 * 18 17 14 38 38 H 1.08000 * 120.13091 * 180.27764 * 19 18 17 39 39 H 0.96702 * 114.00703 * 89.96570 * 23 22 21 40 40 H 1.07995 * 120.04557 * 0.02617 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3128 6 1 4.0789 -0.0855 -0.5397 7 6 4.2303 -1.1927 -2.3584 8 7 3.5761 -1.8362 -3.3007 9 14 6.0919 -1.0603 -2.4376 10 1 6.5836 -0.2910 -1.2664 11 1 6.6860 -2.4211 -2.4202 12 1 6.4859 -0.3640 -3.6886 13 7 2.0197 -0.6925 1.1994 14 6 2.0586 0.2162 2.3529 15 1 1.2446 0.9368 2.2754 16 6 1.9042 -0.5910 3.6435 17 6 3.3763 0.9472 2.3724 18 6 4.5441 0.2697 2.0563 19 6 5.7550 0.9266 2.0648 20 6 5.8063 2.2792 2.4041 21 7 6.8169 3.1857 2.5071 22 6 6.3132 4.3361 2.8660 23 8 7.0280 5.4664 3.0635 24 8 4.9810 4.2334 3.0093 25 6 4.6232 2.9593 2.7290 26 6 3.4130 2.2848 2.7101 27 1 -0.3633 0.5266 0.8826 28 1 -0.3633 0.5010 -0.8972 29 1 -0.3633 -1.0275 0.0148 30 1 1.7516 -1.7715 -1.2056 31 1 1.6053 -0.2618 -2.1369 32 1 4.0605 -2.2429 -4.0361 33 1 2.9252 -1.1058 1.0339 34 1 1.9206 0.0846 4.4988 35 1 0.9566 -1.1295 3.6239 36 1 2.7250 -1.3031 3.7271 37 1 4.5038 -0.7782 1.7983 38 1 6.6614 0.3958 1.8136 39 1 7.1277 6.0123 2.2716 40 1 2.5000 2.8047 2.9598 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602991602.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:23 Heat of formation + Delta-G solvation = -7.029138 kcal Electronic energy + Delta-G solvation = -23311.679441 eV Core-core repulsion = 19900.104241 eV Total energy + Delta-G solvation = -3411.575199 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.23135 -39.17141 -38.01405 -36.39613 -34.68499 -33.23538 -31.90753 -30.67694 -28.48345 -27.87104 -27.38859 -23.74684 -23.59644 -23.05370 -21.92748 -20.87934 -19.52431 -19.30425 -17.72877 -17.28598 -16.79932 -16.33126 -15.82323 -15.03285 -14.74189 -14.40722 -14.26897 -14.02091 -13.53304 -13.37453 -12.99342 -12.71980 -12.31834 -12.24483 -12.01955 -11.80142 -11.57010 -11.44507 -11.28473 -11.11765 -11.01421 -10.73759 -10.60514 -10.48883 -10.46357 -10.27125 -9.27767 -9.09056 -8.69507 -8.42664 -8.27673 -7.81721 -6.04663 -4.07536 0.60236 1.29876 1.81572 2.30126 3.27036 3.36337 3.38749 3.39012 3.69315 4.41550 4.49596 4.70149 4.76702 4.96050 5.09312 5.22945 5.29878 5.35247 5.55478 5.61999 5.74251 5.87816 5.92432 6.01667 6.07291 6.12183 6.16643 6.25028 6.32345 6.39107 6.49754 6.57646 6.70405 6.86732 6.89178 6.90797 7.46439 7.48235 7.62596 7.93895 7.98465 8.16760 8.34871 8.99416 9.57256 11.06273 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.012560 B = 0.006001 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.750190 B = 4664.792476 C = 6161.953171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.085 3.915 3 H 0.031 0.969 4 C 0.020 3.980 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.890 5.890 9 Si 0.881 3.119 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.285 1.285 13 N -0.671 5.671 14 C 0.121 3.879 15 H 0.083 0.917 16 C -0.133 4.133 17 C -0.066 4.066 18 C -0.096 4.096 19 C -0.050 4.050 20 C 0.021 3.979 21 N -0.459 5.459 22 C 0.403 3.597 23 O -0.411 6.411 24 O -0.229 6.229 25 C 0.022 3.978 26 C -0.093 4.093 27 H 0.036 0.964 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.026 0.974 31 H 0.021 0.979 32 H 0.260 0.740 33 H 0.356 0.644 34 H 0.052 0.948 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.145 0.855 38 H 0.137 0.863 39 H 0.417 0.583 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.175 8.979 12.829 15.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.024 4.024 3 H 0.049 0.951 4 C -0.017 4.017 5 C -0.561 4.561 6 H 0.075 0.925 7 C -0.139 4.139 8 N -0.529 5.529 9 Si 0.709 3.291 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.212 1.212 13 N -0.305 5.305 14 C 0.010 3.990 15 H 0.101 0.899 16 C -0.191 4.191 17 C -0.068 4.068 18 C -0.116 4.116 19 C -0.069 4.069 20 C -0.091 4.091 21 N -0.202 5.202 22 C 0.153 3.847 23 O -0.218 6.218 24 O -0.123 6.123 25 C -0.027 4.027 26 C -0.112 4.112 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.044 0.956 31 H 0.039 0.961 32 H 0.070 0.930 33 H 0.180 0.820 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.163 0.837 38 H 0.155 0.845 39 H 0.277 0.723 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.255 8.391 13.282 15.712 hybrid contribution 1.378 1.379 -0.854 2.129 sum 1.633 9.770 12.427 15.892 Atomic orbital electron populations 1.21814 0.96630 1.01413 0.99525 1.21661 0.93316 0.96073 0.91365 0.95140 1.19279 0.95576 0.96165 0.90715 1.21262 0.92116 1.34275 1.08483 0.92483 1.24962 0.97983 0.95245 0.95739 1.69971 1.35326 1.35708 1.11924 0.86699 0.86310 0.77849 0.78243 1.19436 1.20931 1.21159 1.60873 1.34215 1.31463 1.03975 1.20697 0.91293 0.93592 0.93460 0.89869 1.21758 1.02736 0.99718 0.94882 1.20797 0.97722 0.92438 0.95852 1.20968 0.90785 1.01264 0.98572 1.20290 0.99189 0.89930 0.97530 1.19537 0.87874 0.95758 1.05937 1.70991 1.30914 0.99219 1.19106 1.22380 0.77494 0.88443 0.96416 1.84886 1.66636 1.31032 1.39286 1.84436 1.25435 1.29871 1.72578 1.19964 0.97278 0.81360 1.04139 1.19678 0.93716 0.93343 1.04484 0.94495 0.93298 0.92525 0.95560 0.96103 0.93046 0.81973 0.92943 0.91450 0.92428 0.83733 0.84481 0.72271 0.84850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.38 37.16 0.35 -1.94 16 2 C 0.09 1.66 2.41 -67.71 -0.16 1.49 16 3 H 0.03 0.62 7.72 -51.93 -0.40 0.22 16 4 C 0.02 0.49 4.58 -27.88 -0.13 0.36 16 5 C -0.52 -13.65 8.12 -34.44 -0.28 -13.93 16 6 H 0.06 1.43 6.40 -52.48 -0.34 1.09 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -25.86 13.29 55.43 0.74 -25.13 16 9 Si 0.88 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 N -0.67 -11.59 6.05 -100.96 -0.61 -12.20 16 14 C 0.12 1.70 2.63 -68.87 -0.18 1.52 16 15 H 0.08 1.13 6.89 -51.93 -0.36 0.77 16 16 C -0.13 -1.58 9.49 37.16 0.35 -1.22 16 17 C -0.07 -0.98 4.71 -104.55 -0.49 -1.47 16 18 C -0.10 -1.51 8.02 -39.60 -0.32 -1.83 16 19 C -0.05 -0.82 10.10 -39.27 -0.40 -1.22 16 20 C 0.02 0.35 7.23 -84.70 -0.61 -0.26 16 21 N -0.46 -7.57 11.37 -12.80 -0.15 -7.71 16 22 C 0.40 5.65 9.54 52.25 0.50 6.15 16 23 O -0.41 -4.06 13.62 -40.52 -0.55 -4.61 16 24 O -0.23 -3.42 10.78 -20.53 -0.22 -3.64 16 25 C 0.02 0.35 7.42 -38.70 -0.29 0.06 16 26 C -0.09 -1.33 9.67 -39.55 -0.38 -1.71 16 27 H 0.04 0.54 7.38 -51.93 -0.38 0.15 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.36 6.65 4.76 -39.29 -0.19 6.46 16 34 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.15 2.21 6.52 -52.49 -0.34 1.87 16 38 H 0.14 2.08 8.06 -52.49 -0.42 1.66 16 39 H 0.42 1.63 9.06 45.56 0.41 2.04 16 40 H 0.13 1.60 8.03 -52.49 -0.42 1.18 16 LS Contribution 334.85 15.07 5.05 5.05 Total: -1.00 -31.51 334.85 -7.44 -38.95 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -4.53 Total: 5.71 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -2.14 Total: -12.38 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: -0.02 Total: -45.04 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -0.77 Total: -8.25 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.51 -7.44 -38.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602991602.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.922 kcal (2) G-P(sol) polarization free energy of solvation -31.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds