Wall clock time and date at job start Tue Mar 31 2020 06:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47143 * 2 1 4 4 C 1.53002 * 109.46739 * 239.99940 * 2 1 3 5 5 C 1.50703 * 109.47036 * 174.99984 * 4 2 1 6 6 H 1.08006 * 119.99701 * 359.97438 * 5 4 2 7 7 C 1.37868 * 120.00379 * 180.02562 * 5 4 2 8 8 N 1.31527 * 119.99875 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00573 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46885 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47164 * 119.99891 * 9 7 5 12 12 H 1.48503 * 109.47546 * 240.00160 * 9 7 5 13 13 N 1.46895 * 109.47234 * 120.00234 * 2 1 3 14 14 C 1.46901 * 111.00019 * 276.06397 * 13 2 1 15 15 H 1.08997 * 109.47282 * 32.99813 * 14 13 2 16 16 C 1.52998 * 109.47345 * 153.00666 * 14 13 2 17 17 C 1.50697 * 109.47142 * 273.00383 * 14 13 2 18 18 C 1.38661 * 119.76945 * 319.72550 * 17 14 13 19 19 C 1.37758 * 120.39531 * 179.73709 * 18 17 14 20 20 C 1.39546 * 119.73575 * 0.51495 * 19 18 17 21 21 N 1.36148 * 133.71406 * 179.76215 * 20 19 18 22 22 C 1.30621 * 108.72073 * 180.02562 * 21 20 19 23 23 O 1.35179 * 124.93385 * 180.02562 * 22 21 20 24 24 O 1.34380 * 110.13479 * 359.97438 * 22 21 20 25 25 C 1.35270 * 108.19016 * 0.02562 * 24 22 21 26 26 C 1.38009 * 119.77452 * 139.99743 * 17 14 13 27 27 H 1.09005 * 109.46845 * 300.82026 * 1 2 3 28 28 H 1.08991 * 109.47296 * 60.82030 * 1 2 3 29 29 H 1.08996 * 109.46895 * 180.82444 * 1 2 3 30 30 H 1.08995 * 109.47227 * 295.00039 * 4 2 1 31 31 H 1.08994 * 109.47156 * 54.99876 * 4 2 1 32 32 H 0.96997 * 119.99764 * 180.02562 * 8 7 5 33 33 H 1.00904 * 111.00150 * 152.11055 * 13 2 1 34 34 H 1.09007 * 109.47041 * 180.69769 * 16 14 13 35 35 H 1.09007 * 109.46521 * 300.69300 * 16 14 13 36 36 H 1.08992 * 109.47642 * 60.69209 * 16 14 13 37 37 H 1.07999 * 119.80305 * 359.97438 * 18 17 14 38 38 H 1.08000 * 120.13091 * 180.27764 * 19 18 17 39 39 H 0.96702 * 114.00703 * 89.96570 * 23 22 21 40 40 H 1.07995 * 120.04557 * 0.02617 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3128 6 1 4.0789 -0.0855 -0.5397 7 6 4.2303 -1.1927 -2.3584 8 7 3.5761 -1.8362 -3.3007 9 14 6.0919 -1.0603 -2.4376 10 1 6.5836 -0.2910 -1.2664 11 1 6.6860 -2.4211 -2.4202 12 1 6.4859 -0.3640 -3.6886 13 7 2.0197 -0.6925 1.1994 14 6 2.0586 0.2162 2.3529 15 1 1.2446 0.9368 2.2754 16 6 1.9042 -0.5910 3.6435 17 6 3.3763 0.9472 2.3724 18 6 4.5441 0.2697 2.0563 19 6 5.7550 0.9266 2.0648 20 6 5.8063 2.2792 2.4041 21 7 6.8169 3.1857 2.5071 22 6 6.3132 4.3361 2.8660 23 8 7.0280 5.4664 3.0635 24 8 4.9810 4.2334 3.0093 25 6 4.6232 2.9593 2.7290 26 6 3.4130 2.2848 2.7101 27 1 -0.3633 0.5266 0.8826 28 1 -0.3633 0.5010 -0.8972 29 1 -0.3633 -1.0275 0.0148 30 1 1.7516 -1.7715 -1.2056 31 1 1.6053 -0.2618 -2.1369 32 1 4.0605 -2.2429 -4.0361 33 1 2.9252 -1.1058 1.0339 34 1 1.9206 0.0846 4.4988 35 1 0.9566 -1.1295 3.6239 36 1 2.7250 -1.3031 3.7271 37 1 4.5038 -0.7782 1.7983 38 1 6.6614 0.3958 1.8136 39 1 7.1277 6.0123 2.2716 40 1 2.5000 2.8047 2.9598 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602991602.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:22 Heat of formation + Delta-G solvation = -31.731428 kcal Electronic energy + Delta-G solvation = -23312.750613 eV Core-core repulsion = 19900.104241 eV Total energy + Delta-G solvation = -3412.646371 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.36042 -40.34086 -38.94230 -37.74437 -35.95827 -34.90414 -33.51297 -31.84318 -29.76103 -29.16541 -29.06356 -25.11812 -24.81260 -24.61597 -23.07770 -22.02305 -21.09150 -20.29949 -18.85832 -18.46058 -18.40373 -17.91038 -17.08386 -16.48776 -16.17090 -15.72891 -15.50928 -15.16752 -14.93384 -14.62195 -14.18502 -13.99233 -13.76027 -13.48110 -13.34364 -13.29624 -13.13848 -12.71677 -12.67436 -12.60201 -12.41744 -12.29640 -12.11202 -12.00966 -11.79951 -11.55481 -11.16945 -10.92739 -10.54735 -9.89734 -9.44703 -9.20259 -8.15794 -6.23606 -0.49914 0.11340 0.77765 1.18076 1.36752 1.40753 1.50553 2.32505 2.41169 2.51251 3.16553 3.35627 3.45265 3.65563 3.91982 3.95809 4.08932 4.19329 4.39655 4.44916 4.59173 4.68709 4.70834 4.76798 4.85526 4.97667 4.99267 5.07756 5.11546 5.20611 5.29074 5.34000 5.42282 5.46852 5.55355 5.59522 5.66149 5.90578 6.15931 6.27212 6.34896 6.45272 6.68621 6.93110 7.44979 8.96192 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.012560 B = 0.006001 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.750190 B = 4664.792476 C = 6161.953171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.096 3.904 3 H 0.024 0.976 4 C 0.025 3.975 5 C -0.522 4.522 6 H 0.066 0.934 7 C 0.009 3.991 8 N -0.930 5.930 9 Si 0.942 3.058 10 H -0.259 1.259 11 H -0.279 1.279 12 H -0.289 1.289 13 N -0.672 5.672 14 C 0.124 3.876 15 H 0.097 0.903 16 C -0.128 4.128 17 C -0.072 4.072 18 C -0.102 4.102 19 C -0.069 4.069 20 C 0.003 3.997 21 N -0.493 5.493 22 C 0.421 3.579 23 O -0.403 6.403 24 O -0.229 6.229 25 C 0.009 3.991 26 C -0.084 4.084 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.051 0.949 30 H -0.001 1.001 31 H -0.009 1.009 32 H 0.260 0.740 33 H 0.347 0.653 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.143 0.857 38 H 0.138 0.862 39 H 0.445 0.555 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.078 10.519 14.575 17.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.014 4.014 3 H 0.042 0.958 4 C -0.012 4.012 5 C -0.560 4.560 6 H 0.085 0.915 7 C -0.189 4.189 8 N -0.571 5.571 9 Si 0.768 3.232 10 H -0.183 1.183 11 H -0.205 1.205 12 H -0.215 1.215 13 N -0.305 5.305 14 C 0.013 3.987 15 H 0.115 0.885 16 C -0.185 4.185 17 C -0.074 4.074 18 C -0.121 4.121 19 C -0.088 4.088 20 C -0.108 4.108 21 N -0.237 5.237 22 C 0.171 3.829 23 O -0.215 6.215 24 O -0.124 6.124 25 C -0.041 4.041 26 C -0.103 4.103 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.018 0.982 31 H 0.010 0.990 32 H 0.069 0.931 33 H 0.169 0.831 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.160 0.840 38 H 0.156 0.844 39 H 0.310 0.690 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.160 9.961 15.034 18.035 hybrid contribution 1.439 1.008 -1.359 2.221 sum 1.599 10.969 13.674 17.603 Atomic orbital electron populations 1.21736 0.94379 1.01610 1.00974 1.21424 0.95061 0.94801 0.90100 0.95842 1.19155 0.94912 0.94857 0.92277 1.21630 0.93137 1.33110 1.08118 0.91540 1.25744 1.02225 0.95261 0.95682 1.70096 1.37033 1.37209 1.12791 0.85739 0.81341 0.77944 0.78209 1.18262 1.20492 1.21523 1.60910 1.33609 1.32069 1.03928 1.20818 0.91310 0.93584 0.92962 0.88503 1.21726 1.02811 0.99796 0.94185 1.20860 0.97601 0.92787 0.96179 1.21032 0.91157 1.01273 0.98669 1.20390 0.99568 0.90220 0.98615 1.19743 0.88674 0.96104 1.06301 1.70977 1.31372 1.00090 1.21247 1.22576 0.77344 0.89060 0.93943 1.84871 1.65538 1.29977 1.41125 1.84447 1.25856 1.29447 1.72650 1.20166 0.97496 0.81656 1.04755 1.19954 0.94304 0.93027 1.03065 0.91480 0.93361 0.93012 0.98223 0.99045 0.93118 0.83083 0.90886 0.90977 0.92838 0.83977 0.84372 0.68987 0.82101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 9.38 71.98 0.68 -3.46 16 2 C 0.10 3.65 2.41 44.92 0.11 3.76 16 3 H 0.02 0.93 7.72 -2.39 -0.02 0.91 16 4 C 0.03 1.26 4.58 29.85 0.14 1.40 16 5 C -0.52 -27.49 8.12 25.60 0.21 -27.28 16 6 H 0.07 3.32 6.40 -2.91 -0.02 3.30 16 7 C 0.01 0.49 5.46 84.65 0.46 0.95 16 8 N -0.93 -55.32 13.29 21.45 0.28 -55.04 16 9 Si 0.94 43.50 29.54 68.60 2.03 45.53 16 10 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 13 N -0.67 -22.40 6.05 -473.32 -2.86 -25.26 16 14 C 0.12 3.18 2.63 44.17 0.12 3.30 16 15 H 0.10 2.26 6.89 -2.39 -0.02 2.25 16 16 C -0.13 -2.66 9.49 71.98 0.68 -1.98 16 17 C -0.07 -2.01 4.71 -19.82 -0.09 -2.10 16 18 C -0.10 -3.12 8.02 22.26 0.18 -2.94 16 19 C -0.07 -2.22 10.10 22.47 0.23 -2.00 16 20 C 0.00 0.10 7.23 39.29 0.28 0.39 16 21 N -0.49 -15.75 11.37 -422.75 -4.81 -20.56 16 22 C 0.42 11.03 9.54 130.42 1.24 12.27 16 23 O -0.40 -6.88 13.62 -62.32 -0.85 -7.73 16 24 O -0.23 -6.38 10.78 9.22 0.10 -6.28 16 25 C 0.01 0.26 7.42 22.84 0.17 0.43 16 26 C -0.08 -2.22 9.67 22.29 0.22 -2.00 16 27 H 0.07 1.74 7.38 -2.38 -0.02 1.73 16 28 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H -0.01 -0.49 8.14 -2.39 -0.02 -0.50 16 32 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 33 H 0.35 12.79 4.76 -89.69 -0.43 12.37 16 34 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.14 4.33 6.52 -2.91 -0.02 4.32 16 38 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 39 H 0.44 2.09 9.06 -74.06 -0.67 1.42 16 40 H 0.16 3.26 8.03 -2.91 -0.02 3.23 16 Total: -1.00 -68.34 334.85 -1.52 -69.86 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -0.02 Total: 18.75 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: 4.61 Total: -19.27 kcal Atomic # 7 Polarization: -93.47 SS G_CDS: -7.39 Total: -100.86 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.75 Total: -14.01 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -68.34 -1.52 -69.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602991602.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.129 kcal (2) G-P(sol) polarization free energy of solvation -68.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds