Wall clock time and date at job start Tue Mar 31 2020 06:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08990 * 109.47703 * 2 1 4 4 O 1.42902 * 109.46940 * 239.99597 * 2 1 3 5 5 C 1.52996 * 109.46868 * 120.00181 * 2 1 3 6 6 C 1.53498 * 114.20798 * 179.97438 * 5 2 1 7 7 N 1.47065 * 87.98439 * 139.84921 * 6 5 2 8 8 C 1.34780 * 136.05390 * 152.84662 * 7 6 5 9 9 O 1.21581 * 120.00435 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99983 * 180.02562 * 8 7 6 11 11 C 1.39952 * 120.00378 * 175.76175 * 10 8 7 12 12 C 1.39288 * 119.94805 * 215.44003 * 11 10 8 13 13 C 1.38490 * 120.42519 * 179.71870 * 12 11 10 14 14 C 1.37681 * 120.32159 * 0.55660 * 13 12 11 15 15 C 1.40740 * 119.88748 * 359.71532 * 14 13 12 16 16 C 1.41400 * 120.21186 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99858 * 155.35604 * 16 15 14 18 18 C 1.39934 * 120.00299 * 335.36347 * 16 15 14 19 19 N 1.30828 * 119.99677 * 344.60785 * 18 16 15 20 20 Si 1.86796 * 120.00061 * 164.61693 * 18 16 15 21 21 H 1.48498 * 109.47441 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47181 * 119.99910 * 20 18 16 23 23 H 1.48502 * 109.47076 * 239.99579 * 20 18 16 24 24 C 1.38239 * 119.94617 * 35.70777 * 11 10 8 25 25 C 1.47058 * 87.88890 * 333.10521 * 7 6 5 26 26 H 1.09000 * 109.46788 * 300.00653 * 1 2 3 27 27 H 1.09003 * 109.46694 * 60.00344 * 1 2 3 28 28 H 1.08994 * 109.47220 * 180.02562 * 1 2 3 29 29 H 0.96704 * 114.00056 * 60.00106 * 4 2 1 30 30 H 1.09007 * 113.28788 * 46.93070 * 5 2 1 31 31 H 1.09003 * 113.46726 * 25.07193 * 6 5 2 32 32 H 1.09002 * 113.52240 * 254.63595 * 6 5 2 33 33 H 0.97006 * 119.99614 * 355.49109 * 10 8 7 34 34 H 1.07998 * 119.78423 * 359.97438 * 12 11 10 35 35 H 1.08004 * 119.84006 * 180.27145 * 13 12 11 36 36 H 1.08011 * 120.05824 * 179.74741 * 14 13 12 37 37 H 0.97003 * 119.99799 * 179.97438 * 19 18 16 38 38 H 1.08001 * 120.15404 * 359.97438 * 24 11 10 39 39 H 1.08996 * 113.47393 * 141.68150 * 25 7 6 40 40 H 1.09010 * 113.46757 * 272.11873 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2492 6 6 3.5697 -0.7852 1.3587 7 7 3.4257 -0.5219 2.7984 8 6 4.1349 -0.7973 3.9110 9 8 5.1783 -1.4160 3.8292 10 7 3.6874 -0.3869 5.1142 11 6 4.3762 -0.7484 6.2776 12 6 3.6711 -1.0137 7.4492 13 6 4.3422 -1.3779 8.6045 14 6 5.7159 -1.4706 8.6105 15 6 6.4422 -1.2000 7.4357 16 6 7.8531 -1.2936 7.4340 17 1 8.3805 -1.4830 6.5107 18 6 8.5660 -1.1410 8.6284 19 7 7.9814 -0.6214 9.6772 20 14 10.3521 -1.6790 8.7253 21 1 10.7747 -2.2312 7.4132 22 1 11.2029 -0.5112 9.0686 23 1 10.4987 -2.7227 9.7715 24 6 5.7557 -0.8362 6.2637 25 6 2.1642 0.1684 2.4907 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.7210 -0.2702 -1.9980 30 1 1.5389 -1.6718 1.4327 31 1 4.0773 0.0148 0.8198 32 1 3.9809 -1.7699 1.1366 33 1 2.8900 0.1624 5.1735 34 1 2.5937 -0.9390 7.4554 35 1 3.7857 -1.5858 9.5065 36 1 6.2353 -1.7510 9.5150 37 1 8.4755 -0.5160 10.5053 38 1 6.3035 -0.6268 5.3568 39 1 1.3818 -0.0074 3.2290 40 1 2.2936 1.2251 2.2563 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603032799.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:00 Heat of formation + Delta-G solvation = -16.388997 kcal Electronic energy + Delta-G solvation = -22306.518656 eV Core-core repulsion = 18894.537583 eV Total energy + Delta-G solvation = -3411.981073 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.65547 -38.91719 -37.27701 -36.56551 -34.33606 -32.96470 -31.76816 -29.74770 -29.31516 -27.36270 -26.08329 -25.22782 -23.86160 -21.41320 -20.81201 -20.47694 -19.20191 -17.94419 -17.63259 -17.32253 -16.16429 -15.66212 -15.31474 -14.99658 -14.69491 -14.54933 -14.15295 -13.95606 -13.30237 -12.99969 -12.91551 -12.80385 -12.70329 -12.29285 -12.18667 -12.06201 -11.57787 -11.26251 -11.12686 -11.06550 -10.86061 -10.70171 -10.39551 -10.37850 -10.15358 -9.63778 -9.40397 -9.03307 -8.90802 -8.60445 -7.37980 -6.84169 -6.63316 -4.27136 2.60342 2.82498 3.03310 3.13837 3.21371 3.25963 3.55635 3.71877 4.01723 4.19726 4.30339 4.58282 4.66039 4.71652 4.76122 4.92694 5.13788 5.21474 5.27776 5.41568 5.45185 5.58364 5.69671 5.76088 5.81576 6.02592 6.30717 6.46279 6.86068 7.01054 7.11280 7.18417 7.28458 7.34291 7.49243 7.75838 7.91237 8.07182 8.19111 8.33157 8.47167 8.74086 8.96952 9.04779 9.11390 10.28127 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030547 B = 0.003083 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.409822 B = 9078.458755 C = 9843.374149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.114 3.886 3 H 0.060 0.940 4 O -0.564 6.564 5 C -0.120 4.120 6 C 0.140 3.860 7 N -0.671 5.671 8 C 0.729 3.271 9 O -0.560 6.560 10 N -0.677 5.677 11 C 0.165 3.835 12 C -0.262 4.262 13 C -0.093 4.093 14 C -0.174 4.174 15 C 0.118 3.882 16 C -0.455 4.455 17 H 0.078 0.922 18 C 0.074 3.926 19 N -0.798 5.798 20 Si 0.909 3.091 21 H -0.260 1.260 22 H -0.275 1.275 23 H -0.272 1.272 24 C -0.209 4.209 25 C 0.108 3.892 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.378 0.622 30 H 0.109 0.891 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.393 0.607 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.122 0.878 37 H 0.278 0.722 38 H 0.111 0.889 39 H 0.077 0.923 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.307 4.148 -15.236 21.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.055 3.945 3 H 0.078 0.922 4 O -0.369 6.369 5 C -0.139 4.139 6 C 0.017 3.983 7 N -0.413 5.413 8 C 0.433 3.567 9 O -0.435 6.435 10 N -0.323 5.323 11 C 0.073 3.927 12 C -0.284 4.284 13 C -0.112 4.112 14 C -0.193 4.193 15 C 0.115 3.885 16 C -0.485 4.485 17 H 0.096 0.904 18 C -0.143 4.143 19 N -0.424 5.424 20 Si 0.733 3.267 21 H -0.184 1.184 22 H -0.201 1.201 23 H -0.198 1.198 24 C -0.230 4.230 25 C -0.016 4.016 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.225 0.775 30 H 0.127 0.873 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.226 0.774 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.140 0.860 37 H 0.089 0.911 38 H 0.129 0.871 39 H 0.096 0.904 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.047 3.304 -14.399 19.710 hybrid contribution -0.052 0.621 -0.205 0.656 sum -13.099 3.925 -14.604 20.007 Atomic orbital electron populations 1.22507 0.96106 1.03096 1.02596 1.21649 0.92892 0.94828 0.85159 0.92209 1.86555 1.76960 1.57629 1.15782 1.22955 0.97316 1.00505 0.93173 1.22633 0.94564 1.02431 0.78688 1.48692 1.25526 1.60920 1.06116 1.15286 0.82434 0.79911 0.79067 1.90979 1.22522 1.45549 1.84449 1.42483 1.30879 1.54863 1.04065 1.17255 0.91164 1.00776 0.83510 1.20011 0.96699 1.17885 0.93793 1.20446 0.94845 1.00371 0.95524 1.21406 0.92099 1.05871 0.99968 1.17524 0.93334 0.87350 0.90341 1.19630 0.91618 1.42668 0.94583 0.90358 1.25909 1.00804 0.92499 0.95075 1.69834 1.38331 1.31640 1.02558 0.86253 0.81862 0.79068 0.79492 1.18372 1.20068 1.19764 1.21144 0.91335 1.10840 0.99713 1.22847 0.86752 0.96864 0.95088 0.91300 0.92271 0.91589 0.77475 0.87282 0.90183 0.90252 0.77403 0.89459 0.89076 0.86043 0.91099 0.87063 0.90418 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.91 9.53 37.16 0.35 -0.56 16 2 C 0.11 0.73 3.43 -26.73 -0.09 0.64 16 3 H 0.06 0.33 7.91 -51.93 -0.41 -0.08 16 4 O -0.56 -4.15 13.13 -35.23 -0.46 -4.62 16 5 C -0.12 -1.05 3.67 -90.24 -0.33 -1.39 16 6 C 0.14 1.71 8.01 -8.51 -0.07 1.64 16 7 N -0.67 -9.89 3.69 -191.18 -0.71 -10.60 16 8 C 0.73 14.75 8.63 -86.91 -0.75 14.00 16 9 O -0.56 -14.08 14.59 5.29 0.08 -14.00 16 10 N -0.68 -13.23 5.34 -14.27 -0.08 -13.31 16 11 C 0.16 3.95 6.28 -83.76 -0.53 3.43 16 12 C -0.26 -6.01 9.97 -39.10 -0.39 -6.40 16 13 C -0.09 -2.24 10.02 -39.69 -0.40 -2.64 16 14 C -0.17 -4.71 8.69 -38.84 -0.34 -5.04 16 15 C 0.12 3.36 5.58 -106.85 -0.60 2.76 16 16 C -0.46 -12.94 9.06 -37.74 -0.34 -13.28 16 17 H 0.08 2.21 7.89 -52.49 -0.41 1.80 16 18 C 0.07 1.94 5.19 -17.34 -0.09 1.85 16 19 N -0.80 -21.27 10.82 55.55 0.60 -20.67 16 20 Si 0.91 19.65 29.59 -169.99 -5.03 14.63 16 21 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 C -0.21 -5.70 8.43 -38.69 -0.33 -6.03 16 25 C 0.11 1.00 7.86 -8.64 -0.07 0.93 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.38 1.18 9.08 45.56 0.41 1.59 16 30 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.39 6.09 8.55 -40.82 -0.35 5.74 16 34 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 35 H 0.09 1.93 8.06 -52.48 -0.42 1.51 16 36 H 0.12 3.36 6.07 -52.48 -0.32 3.04 16 37 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 38 H 0.11 3.18 6.27 -52.49 -0.33 2.85 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.61 7.95 -51.92 -0.41 0.20 16 LS Contribution 337.92 15.07 5.09 5.09 Total: -1.00 -34.47 337.92 -9.22 -43.70 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -4.76 Total: 9.86 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -3.96 Total: -10.08 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: -0.18 Total: -44.57 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.39 Total: -18.62 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.47 -9.22 -43.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603032799.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.307 kcal (2) G-P(sol) polarization free energy of solvation -34.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds