Wall clock time and date at job start Tue Mar 31 2020 06:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08990 * 109.47703 * 2 1 4 4 O 1.42902 * 109.46940 * 239.99597 * 2 1 3 5 5 C 1.52996 * 109.46868 * 120.00181 * 2 1 3 6 6 C 1.53498 * 114.20798 * 179.97438 * 5 2 1 7 7 N 1.47065 * 87.98439 * 139.84921 * 6 5 2 8 8 C 1.34780 * 136.05390 * 152.84662 * 7 6 5 9 9 O 1.21581 * 120.00435 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99983 * 180.02562 * 8 7 6 11 11 C 1.39952 * 120.00378 * 175.76175 * 10 8 7 12 12 C 1.39288 * 119.94805 * 215.44003 * 11 10 8 13 13 C 1.38490 * 120.42519 * 179.71870 * 12 11 10 14 14 C 1.37681 * 120.32159 * 0.55660 * 13 12 11 15 15 C 1.40740 * 119.88748 * 359.71532 * 14 13 12 16 16 C 1.41400 * 120.21186 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99858 * 155.35604 * 16 15 14 18 18 C 1.39934 * 120.00299 * 335.36347 * 16 15 14 19 19 N 1.30828 * 119.99677 * 344.60785 * 18 16 15 20 20 Si 1.86796 * 120.00061 * 164.61693 * 18 16 15 21 21 H 1.48498 * 109.47441 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47181 * 119.99910 * 20 18 16 23 23 H 1.48502 * 109.47076 * 239.99579 * 20 18 16 24 24 C 1.38239 * 119.94617 * 35.70777 * 11 10 8 25 25 C 1.47058 * 87.88890 * 333.10521 * 7 6 5 26 26 H 1.09000 * 109.46788 * 300.00653 * 1 2 3 27 27 H 1.09003 * 109.46694 * 60.00344 * 1 2 3 28 28 H 1.08994 * 109.47220 * 180.02562 * 1 2 3 29 29 H 0.96704 * 114.00056 * 60.00106 * 4 2 1 30 30 H 1.09007 * 113.28788 * 46.93070 * 5 2 1 31 31 H 1.09003 * 113.46726 * 25.07193 * 6 5 2 32 32 H 1.09002 * 113.52240 * 254.63595 * 6 5 2 33 33 H 0.97006 * 119.99614 * 355.49109 * 10 8 7 34 34 H 1.07998 * 119.78423 * 359.97438 * 12 11 10 35 35 H 1.08004 * 119.84006 * 180.27145 * 13 12 11 36 36 H 1.08011 * 120.05824 * 179.74741 * 14 13 12 37 37 H 0.97003 * 119.99799 * 179.97438 * 19 18 16 38 38 H 1.08001 * 120.15404 * 359.97438 * 24 11 10 39 39 H 1.08996 * 113.47393 * 141.68150 * 25 7 6 40 40 H 1.09010 * 113.46757 * 272.11873 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2492 6 6 3.5697 -0.7852 1.3587 7 7 3.4257 -0.5219 2.7984 8 6 4.1349 -0.7973 3.9110 9 8 5.1783 -1.4160 3.8292 10 7 3.6874 -0.3869 5.1142 11 6 4.3762 -0.7484 6.2776 12 6 3.6711 -1.0137 7.4492 13 6 4.3422 -1.3779 8.6045 14 6 5.7159 -1.4706 8.6105 15 6 6.4422 -1.2000 7.4357 16 6 7.8531 -1.2936 7.4340 17 1 8.3805 -1.4830 6.5107 18 6 8.5660 -1.1410 8.6284 19 7 7.9814 -0.6214 9.6772 20 14 10.3521 -1.6790 8.7253 21 1 10.7747 -2.2312 7.4132 22 1 11.2029 -0.5112 9.0686 23 1 10.4987 -2.7227 9.7715 24 6 5.7557 -0.8362 6.2637 25 6 2.1642 0.1684 2.4907 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.7210 -0.2702 -1.9980 30 1 1.5389 -1.6718 1.4327 31 1 4.0773 0.0148 0.8198 32 1 3.9809 -1.7699 1.1366 33 1 2.8900 0.1624 5.1735 34 1 2.5937 -0.9390 7.4554 35 1 3.7857 -1.5858 9.5065 36 1 6.2353 -1.7510 9.5150 37 1 8.4755 -0.5160 10.5053 38 1 6.3035 -0.6268 5.3568 39 1 1.3818 -0.0074 3.2290 40 1 2.2936 1.2251 2.2563 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603032799.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:59 Heat of formation + Delta-G solvation = -41.801723 kcal Electronic energy + Delta-G solvation = -22307.620635 eV Core-core repulsion = 18894.537583 eV Total energy + Delta-G solvation = -3413.083052 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.85384 -40.31214 -38.81680 -37.51100 -36.19709 -34.83731 -32.52943 -31.75173 -30.59820 -28.80465 -27.26394 -26.96888 -24.76685 -23.04221 -22.62612 -21.54849 -20.56875 -19.62292 -18.90555 -18.14232 -17.48355 -17.17141 -17.00208 -16.45644 -16.11587 -15.93899 -15.32563 -15.10647 -14.75002 -14.57163 -14.31241 -13.98446 -13.54823 -13.53411 -13.35781 -13.15027 -12.97761 -12.88979 -12.80647 -12.59109 -12.17877 -12.09480 -11.89668 -11.58696 -11.47544 -11.21916 -10.95298 -10.84377 -10.75421 -9.82467 -9.40036 -8.74623 -8.58854 -6.37916 0.89839 1.00784 1.35155 1.40663 1.48532 1.51479 2.10344 2.21064 2.72767 2.85132 3.01454 3.63193 3.73264 3.91457 4.09355 4.18818 4.33961 4.40885 4.47492 4.49182 4.55838 4.57858 4.63755 4.74215 5.02148 5.04546 5.05780 5.10338 5.13651 5.22694 5.24378 5.33696 5.42104 5.76509 5.85194 6.06475 6.12264 6.24037 6.39129 6.68717 6.92533 6.96862 6.99730 7.01575 7.54241 8.33197 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030547 B = 0.003083 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.409822 B = 9078.458755 C = 9843.374149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.119 3.881 3 H 0.077 0.923 4 O -0.587 6.587 5 C -0.102 4.102 6 C 0.127 3.873 7 N -0.674 5.674 8 C 0.721 3.279 9 O -0.623 6.623 10 N -0.665 5.665 11 C 0.171 3.829 12 C -0.249 4.249 13 C -0.089 4.089 14 C -0.199 4.199 15 C 0.087 3.913 16 C -0.501 4.501 17 H 0.059 0.941 18 C 0.037 3.963 19 N -0.822 5.822 20 Si 0.983 3.017 21 H -0.268 1.268 22 H -0.260 1.260 23 H -0.257 1.257 24 C -0.239 4.239 25 C 0.112 3.888 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.397 0.603 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.416 0.584 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.109 0.891 37 H 0.290 0.710 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.915 5.268 -15.558 23.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.059 3.941 3 H 0.095 0.905 4 O -0.396 6.396 5 C -0.122 4.122 6 C 0.005 3.995 7 N -0.414 5.414 8 C 0.424 3.576 9 O -0.503 6.503 10 N -0.313 5.313 11 C 0.078 3.922 12 C -0.270 4.270 13 C -0.108 4.108 14 C -0.219 4.219 15 C 0.085 3.915 16 C -0.531 4.531 17 H 0.077 0.923 18 C -0.178 4.178 19 N -0.448 5.448 20 Si 0.804 3.196 21 H -0.192 1.192 22 H -0.184 1.184 23 H -0.181 1.181 24 C -0.261 4.261 25 C -0.010 4.010 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.247 0.753 30 H 0.122 0.878 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.253 0.747 34 H 0.151 0.849 35 H 0.144 0.856 36 H 0.127 0.873 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.118 0.882 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.762 4.479 -14.780 22.067 hybrid contribution 0.582 0.309 -0.258 0.707 sum -15.180 4.787 -15.038 21.898 Atomic orbital electron populations 1.22465 0.94589 1.02869 1.03916 1.21639 0.93876 0.94861 0.83689 0.90503 1.86506 1.77508 1.58566 1.17025 1.22844 0.94063 1.00649 0.94597 1.22957 0.97606 1.01690 0.77281 1.48758 1.26744 1.60380 1.05496 1.15532 0.82108 0.79685 0.80240 1.90939 1.25498 1.48233 1.85605 1.42204 1.31173 1.55051 1.02846 1.17339 0.90286 0.99145 0.85456 1.20443 0.98813 1.15307 0.92460 1.20844 0.93825 0.98755 0.97389 1.21381 0.93638 1.07830 0.99029 1.17858 0.93962 0.88236 0.91492 1.19755 0.92368 1.45835 0.95139 0.92307 1.26704 1.05316 0.91761 0.94010 1.69852 1.40297 1.31473 1.03145 0.85157 0.75972 0.79236 0.79276 1.19218 1.18449 1.18097 1.21071 0.93215 1.13278 0.98507 1.23220 0.84302 0.98018 0.95445 0.90265 0.90723 0.92589 0.75317 0.87820 0.88870 0.92687 0.74702 0.84933 0.85555 0.87299 0.89959 0.89880 0.88225 0.87066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.14 9.53 71.98 0.69 -0.45 16 2 C 0.12 1.15 3.43 30.59 0.10 1.25 16 3 H 0.08 0.52 7.91 -2.39 -0.02 0.50 16 4 O -0.59 -7.36 13.13 -148.98 -1.96 -9.31 16 5 C -0.10 -1.56 3.67 -10.55 -0.04 -1.60 16 6 C 0.13 3.04 8.01 83.18 0.67 3.70 16 7 N -0.67 -19.29 3.69 -877.04 -3.24 -22.53 16 8 C 0.72 29.56 8.63 179.05 1.54 31.10 16 9 O -0.62 -33.18 14.59 -3.97 -0.06 -33.24 16 10 N -0.66 -25.39 5.34 -317.32 -1.69 -27.09 16 11 C 0.17 8.22 6.28 38.10 0.24 8.46 16 12 C -0.25 -10.84 9.97 22.58 0.23 -10.62 16 13 C -0.09 -4.19 10.02 22.20 0.22 -3.97 16 14 C -0.20 -11.05 8.69 22.75 0.20 -10.85 16 15 C 0.09 5.26 5.58 -21.31 -0.12 5.14 16 16 C -0.50 -30.37 9.06 23.46 0.21 -30.16 16 17 H 0.06 3.62 7.89 -2.91 -0.02 3.60 16 18 C 0.04 1.99 5.19 85.25 0.44 2.43 16 19 N -0.82 -44.82 10.82 21.82 0.24 -44.58 16 20 Si 0.98 41.41 29.59 68.60 2.03 43.44 16 21 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 22 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 23 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 24 C -0.24 -13.77 8.43 22.85 0.19 -13.57 16 25 C 0.11 1.69 7.86 83.09 0.65 2.34 16 26 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.40 1.48 9.08 -74.05 -0.67 0.81 16 30 H 0.10 1.72 8.14 -2.38 -0.02 1.71 16 31 H 0.09 1.97 8.10 -2.39 -0.02 1.95 16 32 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.42 11.72 8.55 -92.70 -0.79 10.92 16 34 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 35 H 0.13 4.97 8.06 -2.91 -0.02 4.95 16 36 H 0.11 6.22 6.07 -2.91 -0.02 6.21 16 37 H 0.29 14.05 8.30 -92.71 -0.77 13.29 16 38 H 0.08 5.17 6.27 -2.91 -0.02 5.15 16 39 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.11 1.14 7.95 -2.38 -0.02 1.12 16 Total: -1.00 -81.49 337.92 0.16 -81.33 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: -0.39 Total: 28.75 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 5.23 Total: -16.77 kcal Atomic # 7 Polarization: -89.50 SS G_CDS: -4.70 Total: -94.20 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: -2.01 Total: -42.55 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -81.49 0.16 -81.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603032799.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.528 kcal (2) G-P(sol) polarization free energy of solvation -81.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds