Wall clock time and date at job start Tue Mar 31 2020 06:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47226 * 2 1 4 4 O 1.42903 * 109.47069 * 120.00083 * 2 1 3 5 5 C 1.52994 * 109.46868 * 239.99577 * 2 1 3 6 6 C 1.53500 * 114.20453 * 180.02562 * 5 2 1 7 7 N 1.47064 * 87.98724 * 139.65887 * 6 5 2 8 8 C 1.34773 * 136.06287 * 152.84428 * 7 6 5 9 9 O 1.21594 * 119.99900 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00315 * 179.97438 * 8 7 6 11 11 C 1.39964 * 120.00235 * 174.28912 * 10 8 7 12 12 C 1.39279 * 119.94776 * 145.41669 * 11 10 8 13 13 C 1.38490 * 120.42901 * 180.02562 * 12 11 10 14 14 C 1.37681 * 120.32135 * 0.25221 * 13 12 11 15 15 C 1.40744 * 119.88185 * 359.44152 * 14 13 12 16 16 C 1.41409 * 120.21247 * 180.31205 * 15 14 13 17 17 H 1.07997 * 120.00017 * 214.46632 * 16 15 14 18 18 C 1.39933 * 119.99813 * 34.46407 * 16 15 14 19 19 N 1.30827 * 120.00304 * 5.53212 * 18 16 15 20 20 Si 1.86808 * 119.99815 * 185.53843 * 18 16 15 21 21 H 1.48504 * 109.47199 * 59.99404 * 20 18 16 22 22 H 1.48500 * 109.47070 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46672 * 299.99852 * 20 18 16 24 24 C 1.38233 * 119.94370 * 325.40065 * 11 10 8 25 25 C 1.47070 * 87.88391 * 333.09992 * 7 6 5 26 26 H 1.09000 * 109.46988 * 300.00099 * 1 2 3 27 27 H 1.08999 * 109.47149 * 60.00025 * 1 2 3 28 28 H 1.09004 * 109.47226 * 180.02562 * 1 2 3 29 29 H 0.96706 * 114.00022 * 299.99869 * 4 2 1 30 30 H 1.08997 * 113.41789 * 46.80162 * 5 2 1 31 31 H 1.09000 * 113.47196 * 24.87317 * 6 5 2 32 32 H 1.09003 * 113.51992 * 254.44495 * 6 5 2 33 33 H 0.97001 * 119.99888 * 354.28428 * 10 8 7 34 34 H 1.08002 * 119.78812 * 0.02562 * 12 11 10 35 35 H 1.07997 * 119.84212 * 179.97438 * 13 12 11 36 36 H 1.07999 * 120.06113 * 179.70044 * 14 13 12 37 37 H 0.96999 * 120.00312 * 179.97438 * 19 18 16 38 38 H 1.08004 * 120.16280 * 359.97143 * 24 11 10 39 39 H 1.09002 * 113.46924 * 141.68052 * 25 7 6 40 40 H 1.09004 * 113.46686 * 272.12065 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0399 -0.7213 -1.2492 6 6 3.5697 -0.7852 -1.3586 7 7 3.4253 -2.1652 -1.8462 8 6 4.1342 -2.9938 -2.6381 9 8 5.1781 -2.6157 -3.1339 10 7 3.6867 -4.2420 -2.8796 11 6 4.3577 -5.0612 -3.7949 12 6 4.4311 -6.4345 -3.5751 13 6 5.0930 -7.2543 -4.4739 14 6 5.6906 -6.7192 -5.5929 15 6 5.6190 -5.3340 -5.8314 16 6 6.2247 -4.7779 -6.9819 17 1 6.6679 -3.7941 -6.9367 18 6 6.2497 -5.5023 -8.1789 19 7 5.6199 -6.6458 -8.2648 20 14 7.1827 -4.8367 -9.6541 21 1 8.6164 -4.6761 -9.3017 22 1 7.0547 -5.7850 -10.7897 23 1 6.6182 -3.5196 -10.0436 24 6 4.9462 -4.5058 -4.9156 25 6 2.1635 -2.2409 -1.0945 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.7210 -0.2701 1.9980 30 1 1.5388 -0.4083 -2.1651 31 1 4.0771 -0.7156 -0.3964 32 1 3.9815 -0.1030 -2.1023 33 1 2.8996 -4.5726 -2.4191 34 1 3.9689 -6.8630 -2.6981 35 1 5.1444 -8.3180 -4.2939 36 1 6.2098 -7.3618 -6.2885 37 1 5.6369 -7.1477 -9.0946 38 1 4.8892 -3.4410 -5.0873 39 1 1.3810 -2.7937 -1.6144 40 1 2.2925 -2.5630 -0.0612 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603032800.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:03 Heat of formation + Delta-G solvation = -17.113523 kcal Electronic energy + Delta-G solvation = -22434.387171 eV Core-core repulsion = 19022.374680 eV Total energy + Delta-G solvation = -3412.012491 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.62318 -38.92902 -37.23751 -36.43051 -34.26835 -32.90648 -31.76407 -29.71926 -29.31568 -27.37204 -26.05855 -25.18889 -23.88259 -21.41255 -20.77488 -20.35545 -19.14574 -17.90571 -17.63331 -17.25454 -16.04343 -15.68759 -15.31040 -14.88429 -14.65727 -14.46426 -14.27018 -13.96844 -13.21946 -12.97818 -12.92599 -12.79460 -12.61316 -12.32366 -12.12878 -11.94792 -11.58761 -11.12975 -11.09763 -11.04209 -10.93382 -10.84510 -10.40887 -10.21531 -10.09671 -9.60027 -9.36440 -9.15673 -8.90517 -8.48491 -7.29212 -6.80285 -6.53437 -4.27643 2.68939 2.85514 3.00512 3.15334 3.20094 3.27427 3.73484 3.85524 4.00052 4.06720 4.29588 4.56358 4.68167 4.79691 4.93039 4.95747 5.17871 5.35225 5.39910 5.47438 5.55138 5.56294 5.71114 5.76202 5.81547 6.09007 6.29575 6.44092 6.87454 7.00894 7.10903 7.17422 7.27493 7.36156 7.52144 7.78082 7.90854 8.05162 8.20645 8.35120 8.48994 8.75749 8.99560 9.06842 9.13457 10.40157 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026606 B = 0.003230 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.129355 B = 8665.629022 C = 9289.618586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.114 3.886 3 H 0.063 0.937 4 O -0.564 6.564 5 C -0.126 4.126 6 C 0.136 3.864 7 N -0.670 5.670 8 C 0.730 3.270 9 O -0.564 6.564 10 N -0.678 5.678 11 C 0.164 3.836 12 C -0.252 4.252 13 C -0.096 4.096 14 C -0.160 4.160 15 C 0.122 3.878 16 C -0.465 4.465 17 H 0.076 0.924 18 C 0.073 3.927 19 N -0.813 5.813 20 Si 0.912 3.088 21 H -0.265 1.265 22 H -0.280 1.280 23 H -0.267 1.267 24 C -0.201 4.201 25 C 0.111 3.889 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.379 0.621 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.393 0.607 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.277 0.723 38 H 0.107 0.893 39 H 0.069 0.931 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.379 10.673 15.021 21.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.055 3.945 3 H 0.080 0.920 4 O -0.370 6.370 5 C -0.145 4.145 6 C 0.013 3.987 7 N -0.411 5.411 8 C 0.433 3.567 9 O -0.440 6.440 10 N -0.324 5.324 11 C 0.072 3.928 12 C -0.274 4.274 13 C -0.115 4.115 14 C -0.180 4.180 15 C 0.119 3.881 16 C -0.496 4.496 17 H 0.094 0.906 18 C -0.142 4.142 19 N -0.440 5.440 20 Si 0.737 3.263 21 H -0.190 1.190 22 H -0.205 1.205 23 H -0.192 1.192 24 C -0.222 4.222 25 C -0.012 4.012 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.226 0.774 30 H 0.133 0.867 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.226 0.774 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.136 0.864 37 H 0.088 0.912 38 H 0.125 0.875 39 H 0.088 0.912 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.238 10.244 13.858 20.045 hybrid contribution -0.470 0.400 -0.010 0.617 sum -10.708 10.643 13.849 20.487 Atomic orbital electron populations 1.22481 0.96076 1.03110 1.02543 1.21494 0.92770 0.95013 0.85261 0.91955 1.86527 1.77077 1.57508 1.15896 1.23098 0.97144 0.96594 0.97681 1.22735 0.94470 0.82256 0.99268 1.48640 1.25778 1.15967 1.50726 1.15267 0.82249 0.80160 0.78979 1.90979 1.22793 1.75281 1.54911 1.42509 1.31850 1.12529 1.45491 1.17267 0.97689 0.88927 0.88883 1.20064 1.13004 0.91810 1.02495 1.20473 0.98695 0.97066 0.95291 1.21354 1.03551 0.96198 0.96853 1.17495 0.88304 0.91405 0.90919 1.19487 1.33292 1.02826 0.93982 0.90597 1.25832 0.93814 0.94215 1.00326 1.69773 1.34082 1.12434 1.27683 0.86315 0.80720 0.79384 0.79877 1.18999 1.20495 1.19176 1.21123 1.05778 0.99545 0.95779 1.22814 0.85921 0.95230 0.97239 0.92321 0.91392 0.91551 0.77401 0.86709 0.89732 0.90652 0.77355 0.89268 0.88925 0.86412 0.91178 0.87529 0.91236 0.88794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.89 9.53 37.16 0.35 -0.53 16 2 C 0.11 0.70 3.65 -26.73 -0.10 0.60 16 3 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 4 O -0.56 -3.76 11.40 -35.23 -0.40 -4.16 16 5 C -0.13 -1.10 3.93 -90.24 -0.35 -1.45 16 6 C 0.14 1.64 8.10 -8.51 -0.07 1.57 16 7 N -0.67 -10.30 3.69 -191.17 -0.71 -11.00 16 8 C 0.73 15.08 8.51 -86.92 -0.74 14.34 16 9 O -0.56 -14.32 14.91 5.28 0.08 -14.24 16 10 N -0.68 -13.57 5.34 -14.27 -0.08 -13.65 16 11 C 0.16 3.98 6.25 -83.76 -0.52 3.46 16 12 C -0.25 -5.82 9.97 -39.10 -0.39 -6.21 16 13 C -0.10 -2.33 10.02 -39.69 -0.40 -2.72 16 14 C -0.16 -4.34 8.62 -38.84 -0.33 -4.68 16 15 C 0.12 3.49 5.50 -106.85 -0.59 2.90 16 16 C -0.46 -13.31 9.04 -37.74 -0.34 -13.65 16 17 H 0.08 2.15 7.85 -52.49 -0.41 1.73 16 18 C 0.07 1.95 5.31 -17.34 -0.09 1.86 16 19 N -0.81 -22.04 10.98 55.55 0.61 -21.43 16 20 Si 0.91 19.99 29.56 -169.99 -5.03 14.96 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 24 C -0.20 -5.50 8.39 -38.69 -0.32 -5.82 16 25 C 0.11 1.19 7.71 -8.64 -0.07 1.13 16 26 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.38 1.00 9.08 45.56 0.41 1.42 16 30 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.08 0.98 7.80 -51.93 -0.41 0.57 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.39 6.37 8.55 -40.82 -0.35 6.02 16 34 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 35 H 0.09 1.96 8.06 -52.49 -0.42 1.54 16 36 H 0.12 3.27 6.48 -52.49 -0.34 2.93 16 37 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 38 H 0.11 3.05 6.51 -52.48 -0.34 2.70 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.99 6.92 -51.93 -0.36 0.63 16 LS Contribution 336.32 15.07 5.07 5.07 Total: -1.00 -34.54 336.32 -9.15 -43.69 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -4.73 Total: 9.99 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -3.96 Total: -9.22 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -0.17 Total: -46.08 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.32 Total: -18.41 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.96 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.54 -9.15 -43.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603032800.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.575 kcal (2) G-P(sol) polarization free energy of solvation -34.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds