Wall clock time and date at job start Tue Mar 31 2020 06:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47226 * 2 1 4 4 O 1.42903 * 109.47069 * 120.00083 * 2 1 3 5 5 C 1.52994 * 109.46868 * 239.99577 * 2 1 3 6 6 C 1.53500 * 114.20453 * 180.02562 * 5 2 1 7 7 N 1.47064 * 87.98724 * 139.65887 * 6 5 2 8 8 C 1.34773 * 136.06287 * 152.84428 * 7 6 5 9 9 O 1.21594 * 119.99900 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00315 * 179.97438 * 8 7 6 11 11 C 1.39964 * 120.00235 * 174.28912 * 10 8 7 12 12 C 1.39279 * 119.94776 * 145.41669 * 11 10 8 13 13 C 1.38490 * 120.42901 * 180.02562 * 12 11 10 14 14 C 1.37681 * 120.32135 * 0.25221 * 13 12 11 15 15 C 1.40744 * 119.88185 * 359.44152 * 14 13 12 16 16 C 1.41409 * 120.21247 * 180.31205 * 15 14 13 17 17 H 1.07997 * 120.00017 * 214.46632 * 16 15 14 18 18 C 1.39933 * 119.99813 * 34.46407 * 16 15 14 19 19 N 1.30827 * 120.00304 * 5.53212 * 18 16 15 20 20 Si 1.86808 * 119.99815 * 185.53843 * 18 16 15 21 21 H 1.48504 * 109.47199 * 59.99404 * 20 18 16 22 22 H 1.48500 * 109.47070 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46672 * 299.99852 * 20 18 16 24 24 C 1.38233 * 119.94370 * 325.40065 * 11 10 8 25 25 C 1.47070 * 87.88391 * 333.09992 * 7 6 5 26 26 H 1.09000 * 109.46988 * 300.00099 * 1 2 3 27 27 H 1.08999 * 109.47149 * 60.00025 * 1 2 3 28 28 H 1.09004 * 109.47226 * 180.02562 * 1 2 3 29 29 H 0.96706 * 114.00022 * 299.99869 * 4 2 1 30 30 H 1.08997 * 113.41789 * 46.80162 * 5 2 1 31 31 H 1.09000 * 113.47196 * 24.87317 * 6 5 2 32 32 H 1.09003 * 113.51992 * 254.44495 * 6 5 2 33 33 H 0.97001 * 119.99888 * 354.28428 * 10 8 7 34 34 H 1.08002 * 119.78812 * 0.02562 * 12 11 10 35 35 H 1.07997 * 119.84212 * 179.97438 * 13 12 11 36 36 H 1.07999 * 120.06113 * 179.70044 * 14 13 12 37 37 H 0.96999 * 120.00312 * 179.97438 * 19 18 16 38 38 H 1.08004 * 120.16280 * 359.97143 * 24 11 10 39 39 H 1.09002 * 113.46924 * 141.68052 * 25 7 6 40 40 H 1.09004 * 113.46686 * 272.12065 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0399 -0.7213 -1.2492 6 6 3.5697 -0.7852 -1.3586 7 7 3.4253 -2.1652 -1.8462 8 6 4.1342 -2.9938 -2.6381 9 8 5.1781 -2.6157 -3.1339 10 7 3.6867 -4.2420 -2.8796 11 6 4.3577 -5.0612 -3.7949 12 6 4.4311 -6.4345 -3.5751 13 6 5.0930 -7.2543 -4.4739 14 6 5.6906 -6.7192 -5.5929 15 6 5.6190 -5.3340 -5.8314 16 6 6.2247 -4.7779 -6.9819 17 1 6.6679 -3.7941 -6.9367 18 6 6.2497 -5.5023 -8.1789 19 7 5.6199 -6.6458 -8.2648 20 14 7.1827 -4.8367 -9.6541 21 1 8.6164 -4.6761 -9.3017 22 1 7.0547 -5.7850 -10.7897 23 1 6.6182 -3.5196 -10.0436 24 6 4.9462 -4.5058 -4.9156 25 6 2.1635 -2.2409 -1.0945 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.7210 -0.2701 1.9980 30 1 1.5388 -0.4083 -2.1651 31 1 4.0771 -0.7156 -0.3964 32 1 3.9815 -0.1030 -2.1023 33 1 2.8996 -4.5726 -2.4191 34 1 3.9689 -6.8630 -2.6981 35 1 5.1444 -8.3180 -4.2939 36 1 6.2098 -7.3618 -6.2885 37 1 5.6369 -7.1477 -9.0946 38 1 4.8892 -3.4410 -5.0873 39 1 1.3810 -2.7937 -1.6144 40 1 2.2925 -2.5630 -0.0612 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603032800.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:02 Heat of formation + Delta-G solvation = -42.168143 kcal Electronic energy + Delta-G solvation = -22435.473621 eV Core-core repulsion = 19022.374680 eV Total energy + Delta-G solvation = -3413.098941 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.84636 -40.33799 -38.84031 -37.34301 -36.15185 -34.81332 -32.48192 -31.74341 -30.63447 -28.84286 -27.24585 -27.00819 -24.79435 -23.06852 -22.63512 -21.42861 -20.52382 -19.60773 -18.89756 -18.10093 -17.50875 -17.13254 -16.95547 -16.48229 -16.12131 -15.70433 -15.55180 -14.94010 -14.87182 -14.61624 -14.21132 -14.00684 -13.60853 -13.56865 -13.26106 -13.09092 -12.92289 -12.91899 -12.83654 -12.60960 -12.19734 -12.06367 -11.74571 -11.73361 -11.49515 -11.21615 -11.04626 -10.79556 -10.72521 -9.76191 -9.33169 -8.72768 -8.52148 -6.40911 0.90291 0.99454 1.35628 1.40653 1.48154 1.49501 2.12141 2.22988 2.78194 2.89344 3.18708 3.45907 3.68044 3.90404 4.02557 4.28620 4.38274 4.44754 4.51938 4.53496 4.55978 4.59229 4.61338 4.73515 5.01466 5.05763 5.07641 5.10237 5.11689 5.20396 5.28839 5.32804 5.42075 5.76180 5.82353 6.03149 6.11157 6.23972 6.40038 6.68083 6.92157 6.95934 7.00398 7.02719 7.53321 8.41611 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026606 B = 0.003230 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.129355 B = 8665.629022 C = 9289.618586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.121 3.879 3 H 0.077 0.923 4 O -0.582 6.582 5 C -0.105 4.105 6 C 0.125 3.875 7 N -0.673 5.673 8 C 0.721 3.279 9 O -0.623 6.623 10 N -0.667 5.667 11 C 0.170 3.830 12 C -0.240 4.240 13 C -0.091 4.091 14 C -0.184 4.184 15 C 0.091 3.909 16 C -0.510 4.510 17 H 0.060 0.940 18 C 0.034 3.966 19 N -0.837 5.837 20 Si 0.985 3.015 21 H -0.262 1.262 22 H -0.260 1.260 23 H -0.265 1.265 24 C -0.228 4.228 25 C 0.111 3.889 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.397 0.603 30 H 0.123 0.877 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.414 0.586 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.104 0.896 37 H 0.287 0.713 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.278 10.692 16.611 23.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.062 3.938 3 H 0.095 0.905 4 O -0.392 6.392 5 C -0.124 4.124 6 C 0.002 3.998 7 N -0.412 5.412 8 C 0.424 3.576 9 O -0.504 6.504 10 N -0.315 5.315 11 C 0.076 3.924 12 C -0.261 4.261 13 C -0.110 4.110 14 C -0.204 4.204 15 C 0.088 3.912 16 C -0.541 4.541 17 H 0.078 0.922 18 C -0.178 4.178 19 N -0.464 5.464 20 Si 0.806 3.194 21 H -0.187 1.187 22 H -0.184 1.184 23 H -0.190 1.190 24 C -0.250 4.250 25 C -0.010 4.010 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.247 0.753 30 H 0.141 0.859 31 H 0.110 0.890 32 H 0.083 0.917 33 H 0.251 0.749 34 H 0.151 0.849 35 H 0.147 0.853 36 H 0.122 0.878 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.226 10.284 15.539 22.287 hybrid contribution 0.019 0.434 -0.290 0.522 sum -12.207 10.718 15.250 22.281 Atomic orbital electron populations 1.22438 0.94719 1.03027 1.03581 1.21436 0.93576 0.94959 0.83862 0.90523 1.86468 1.77516 1.58225 1.16942 1.23054 0.94254 0.95346 0.99763 1.23062 0.97433 0.80283 0.98986 1.48779 1.26617 1.16374 1.49436 1.15529 0.82037 0.80485 0.79512 1.90936 1.25639 1.76389 1.57392 1.42269 1.32224 1.12254 1.44750 1.17361 0.96622 0.90080 0.88344 1.20492 1.11499 0.90971 1.03186 1.20862 0.97138 0.99068 0.93947 1.21315 1.05298 0.95435 0.98318 1.17820 0.89167 0.92591 0.91575 1.19654 1.35653 1.03027 0.95745 0.92224 1.26655 0.94200 0.94331 1.02632 1.69816 1.34423 1.13240 1.28939 0.85228 0.79036 0.78948 0.76232 1.18661 1.18362 1.18987 1.21038 1.07923 0.98250 0.97747 1.23099 0.83802 0.97083 0.97045 0.90723 0.91008 0.92171 0.75252 0.85905 0.89015 0.91730 0.74885 0.84904 0.85349 0.87795 0.90248 0.90206 0.89744 0.87918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.13 9.53 71.98 0.69 -0.44 16 2 C 0.12 1.10 3.65 30.59 0.11 1.21 16 3 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 4 O -0.58 -5.99 11.40 -148.98 -1.70 -7.69 16 5 C -0.11 -1.59 3.93 -10.55 -0.04 -1.64 16 6 C 0.13 2.92 8.10 83.18 0.67 3.59 16 7 N -0.67 -20.29 3.69 -877.01 -3.24 -23.53 16 8 C 0.72 30.29 8.51 179.06 1.52 31.81 16 9 O -0.62 -33.30 14.91 -4.01 -0.06 -33.36 16 10 N -0.67 -26.37 5.34 -317.32 -1.69 -28.06 16 11 C 0.17 8.24 6.25 38.09 0.24 8.48 16 12 C -0.24 -10.60 9.97 22.58 0.23 -10.38 16 13 C -0.09 -4.31 10.02 22.20 0.22 -4.09 16 14 C -0.18 -10.25 8.62 22.75 0.20 -10.05 16 15 C 0.09 5.49 5.50 -21.31 -0.12 5.37 16 16 C -0.51 -30.98 9.04 23.46 0.21 -30.77 16 17 H 0.06 3.65 7.85 -2.91 -0.02 3.62 16 18 C 0.03 1.89 5.31 85.25 0.45 2.35 16 19 N -0.84 -46.43 10.98 21.82 0.24 -46.19 16 20 Si 0.98 41.93 29.56 68.60 2.03 43.95 16 21 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 22 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 24 C -0.23 -13.13 8.39 22.85 0.19 -12.94 16 25 C 0.11 2.13 7.71 83.09 0.64 2.77 16 26 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 27 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 29 H 0.40 0.83 9.08 -74.05 -0.67 0.16 16 30 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.09 2.02 7.80 -2.39 -0.02 2.00 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 33 H 0.41 12.55 8.55 -92.71 -0.79 11.75 16 34 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 35 H 0.13 5.07 8.06 -2.91 -0.02 5.04 16 36 H 0.10 5.98 6.48 -2.91 -0.02 5.96 16 37 H 0.29 14.35 8.30 -92.71 -0.77 13.58 16 38 H 0.08 4.93 6.51 -2.91 -0.02 4.91 16 39 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.10 1.87 6.92 -2.39 -0.02 1.85 16 Total: -1.00 -80.19 336.32 0.40 -79.79 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: -0.39 Total: 29.80 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: 5.22 Total: -14.71 kcal Atomic # 7 Polarization: -93.09 SS G_CDS: -4.69 Total: -97.79 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -1.76 Total: -41.05 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Total: -80.19 0.40 -79.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603032800.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.623 kcal (2) G-P(sol) polarization free energy of solvation -80.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds