Wall clock time and date at job start Tue Mar 31 2020 06:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.47206 * 2 1 4 4 O 1.21284 * 119.99732 * 0.02562 * 3 2 1 5 5 N 1.34768 * 120.00247 * 179.72444 * 3 2 1 6 6 C 1.46500 * 120.00095 * 180.27490 * 5 3 2 7 7 H 1.09004 * 109.47178 * 35.00887 * 6 5 3 8 8 C 1.52998 * 109.47559 * 275.00353 * 6 5 3 9 9 C 1.50705 * 109.46818 * 155.00235 * 6 5 3 10 10 O 1.21275 * 120.00159 * 0.02562 * 9 6 5 11 11 N 1.34782 * 119.99862 * 180.02562 * 9 6 5 12 12 C 1.39233 * 119.99876 * 176.71133 * 11 9 6 13 13 C 1.39489 * 119.82910 * 217.47415 * 12 11 9 14 14 C 1.36379 * 120.16541 * 179.75919 * 13 12 11 15 15 C 1.40871 * 119.82697 * 0.51612 * 14 13 12 16 16 C 1.41150 * 120.16186 * 179.71721 * 15 14 13 17 17 H 1.08001 * 120.00037 * 157.93286 * 16 15 14 18 18 C 1.39907 * 120.00104 * 337.93315 * 16 15 14 19 19 N 1.30875 * 120.00172 * 327.64927 * 18 16 15 20 20 Si 1.86806 * 119.99769 * 147.64417 * 18 16 15 21 21 H 1.48501 * 109.46758 * 94.99369 * 20 18 16 22 22 H 1.48503 * 109.46964 * 214.98771 * 20 18 16 23 23 H 1.48495 * 109.47151 * 334.99230 * 20 18 16 24 24 C 1.40871 * 119.67458 * 359.73843 * 15 14 13 25 25 C 1.36373 * 119.82726 * 0.02562 * 24 15 14 26 26 H 1.09001 * 109.47083 * 299.99073 * 1 2 3 27 27 H 1.08992 * 109.47622 * 59.99542 * 1 2 3 28 28 H 1.09009 * 109.46957 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47083 * 240.00927 * 2 1 3 30 30 H 1.08992 * 109.47622 * 120.00458 * 2 1 3 31 31 H 0.97004 * 120.00020 * 0.28467 * 5 3 2 32 32 H 1.08998 * 109.47297 * 179.97438 * 8 6 5 33 33 H 1.08997 * 109.47011 * 300.00175 * 8 6 5 34 34 H 1.08998 * 109.46772 * 59.99877 * 8 6 5 35 35 H 0.97004 * 119.99666 * 356.70989 * 11 9 6 36 36 H 1.07996 * 119.91633 * 0.02562 * 13 12 11 37 37 H 1.07998 * 120.08357 * 180.25234 * 14 13 12 38 38 H 0.96992 * 120.00001 * 179.97438 * 19 18 16 39 39 H 1.08000 * 120.08724 * 179.97438 * 24 15 14 40 40 H 1.08003 * 119.91531 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3573 1.6671 0.0056 6 6 3.8456 3.0484 0.0117 7 1 3.1709 3.6697 0.6008 8 6 3.9022 3.5757 -1.4234 9 6 5.2249 3.0908 0.6173 10 8 5.7487 2.0680 1.0052 11 7 5.8765 4.2655 0.7279 12 6 7.1215 4.3151 1.3493 13 6 7.4541 5.4076 2.1503 14 6 8.6698 5.4610 2.7661 15 6 9.5947 4.4144 2.5827 16 6 10.8572 4.4652 3.2118 17 1 11.4152 3.5554 3.3771 18 6 11.3858 5.6942 3.6213 19 7 11.1197 6.7802 2.9411 20 14 12.4711 5.7850 5.1390 21 1 13.8974 5.7087 4.7327 22 1 12.2259 7.0672 5.8468 23 1 12.1528 4.6513 6.0437 24 6 9.2536 3.3170 1.7679 25 6 8.0323 3.2754 1.1625 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8898 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5138 0.8898 31 1 3.9877 0.9299 0.0055 32 1 4.2651 4.6035 -1.4188 33 1 4.5769 2.9544 -2.0124 34 1 2.9046 3.5449 -1.8614 35 1 5.4780 5.0762 0.3746 36 1 6.7455 6.2110 2.2867 37 1 8.9243 6.3055 3.3893 38 1 11.4859 7.6322 3.2252 39 1 9.9577 2.5111 1.6223 40 1 7.7694 2.4349 0.5372 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603634538.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:48 Heat of formation + Delta-G solvation = -64.873854 kcal Electronic energy + Delta-G solvation = -22173.299548 eV Core-core repulsion = 18759.216013 eV Total energy + Delta-G solvation = -3414.083534 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.40390 -39.29226 -37.37866 -35.06846 -34.53742 -33.22685 -32.98071 -30.75261 -29.59114 -28.89448 -25.58891 -24.99274 -23.45327 -21.63291 -20.79559 -20.35226 -19.64592 -17.89980 -17.40049 -17.00582 -15.98375 -15.90322 -15.61130 -15.21781 -14.90047 -14.27218 -14.02716 -13.73146 -13.59321 -13.18843 -12.76017 -12.69003 -12.44887 -12.32996 -12.14331 -12.05697 -11.95839 -11.71295 -11.46193 -11.36441 -11.19028 -10.99216 -10.58687 -10.22013 -9.99649 -9.80655 -9.57268 -9.28969 -9.06150 -8.76352 -7.60598 -7.21433 -6.94089 -4.32713 2.46862 2.51103 2.89537 2.92188 3.02122 3.04603 3.08530 3.28908 3.70819 3.85343 4.44835 4.55166 4.81828 4.86684 4.90173 4.98339 5.10287 5.32170 5.47774 5.56900 5.62575 5.66968 5.71299 5.97614 5.99221 6.14177 6.26800 6.35714 6.69403 6.88244 6.94869 7.07750 7.22207 7.40418 7.50412 7.61126 7.80855 7.96438 8.09041 8.19209 8.21179 8.48774 8.63738 8.78660 8.93103 9.96887 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.041279 B = 0.002772 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.140651 B =10097.065023 C =10326.034171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.144 4.144 3 C 0.514 3.486 4 O -0.546 6.546 5 N -0.712 5.712 6 C 0.125 3.875 7 H 0.111 0.889 8 C -0.158 4.158 9 C 0.495 3.505 10 O -0.532 6.532 11 N -0.640 5.640 12 C -0.027 4.027 13 C -0.099 4.099 14 C -0.172 4.172 15 C 0.114 3.886 16 C -0.464 4.464 17 H 0.082 0.918 18 C 0.088 3.912 19 N -0.768 5.768 20 Si 0.897 3.103 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.257 1.257 24 C -0.225 4.225 25 C -0.063 4.063 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.411 0.589 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.396 0.604 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.284 0.716 39 H 0.095 0.905 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.020 -6.030 -5.930 15.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.184 4.184 3 C 0.301 3.699 4 O -0.423 6.423 5 N -0.365 5.365 6 C 0.016 3.984 7 H 0.129 0.871 8 C -0.217 4.217 9 C 0.280 3.720 10 O -0.410 6.410 11 N -0.282 5.282 12 C -0.119 4.119 13 C -0.120 4.120 14 C -0.191 4.191 15 C 0.111 3.889 16 C -0.491 4.491 17 H 0.101 0.899 18 C -0.134 4.134 19 N -0.390 5.390 20 Si 0.720 3.280 21 H -0.194 1.194 22 H -0.198 1.198 23 H -0.181 1.181 24 C -0.245 4.245 25 C -0.083 4.083 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.247 0.753 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.230 0.770 36 H 0.108 0.892 37 H 0.126 0.874 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.168 -5.839 -5.682 15.484 hybrid contribution 0.729 0.336 0.507 0.949 sum -12.438 -5.503 -5.175 14.553 Atomic orbital electron populations 1.21524 0.92991 1.01527 1.03331 1.21624 0.98568 0.93592 1.04614 1.20803 0.81733 0.92039 0.75337 1.90689 1.55310 1.46537 1.49799 1.45822 1.07472 1.08158 1.75076 1.20755 0.94088 0.85297 0.98253 0.87147 1.22125 1.03290 1.01624 0.94662 1.20448 0.86789 0.84627 0.80088 1.90674 1.67894 1.33212 1.49192 1.42847 1.18964 1.09344 1.57093 1.17033 0.85897 1.00851 1.08082 1.20178 0.97387 0.96601 0.97791 1.20631 0.93020 1.01138 1.04359 1.17603 0.92608 0.90447 0.88257 1.19525 1.02375 0.93667 1.33547 0.89949 1.25959 0.95824 0.95105 0.96553 1.69940 1.35217 1.00631 1.33237 0.86496 0.80063 0.79166 0.82295 1.19415 1.19844 1.18064 1.20593 0.97157 1.01758 1.05018 1.20269 0.92536 0.96599 0.98887 0.91970 0.92029 0.92103 0.88840 0.88682 0.75251 0.90904 0.91722 0.91070 0.77009 0.89192 0.87428 0.90519 0.88712 0.88037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.20 37.16 0.34 -0.76 16 2 C -0.14 -1.17 6.42 -27.88 -0.18 -1.35 16 3 C 0.51 6.11 7.79 -10.99 -0.09 6.02 16 4 O -0.55 -8.23 15.64 5.55 0.09 -8.14 16 5 N -0.71 -8.53 4.95 -54.93 -0.27 -8.80 16 6 C 0.12 1.60 2.99 -69.08 -0.21 1.40 16 7 H 0.11 1.45 7.58 -51.93 -0.39 1.05 16 8 C -0.16 -1.68 9.38 37.16 0.35 -1.34 16 9 C 0.50 8.17 7.03 -10.98 -0.08 8.10 16 10 O -0.53 -10.57 13.45 5.56 0.07 -10.50 16 11 N -0.64 -10.88 5.21 -9.74 -0.05 -10.93 16 12 C -0.03 -0.58 6.25 -83.57 -0.52 -1.11 16 13 C -0.10 -2.24 9.90 -39.79 -0.39 -2.63 16 14 C -0.17 -4.32 8.74 -39.26 -0.34 -4.67 16 15 C 0.11 2.99 5.57 -106.80 -0.60 2.40 16 16 C -0.46 -12.07 8.94 -37.85 -0.34 -12.40 16 17 H 0.08 2.08 8.02 -52.49 -0.42 1.66 16 18 C 0.09 2.13 4.77 -17.33 -0.08 2.05 16 19 N -0.77 -19.08 11.78 55.55 0.65 -18.42 16 20 Si 0.90 17.94 29.66 -169.99 -5.04 12.90 16 21 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 22 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 23 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 24 C -0.23 -5.63 9.74 -39.26 -0.38 -6.01 16 25 C -0.06 -1.48 8.59 -39.79 -0.34 -1.82 16 26 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 27 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 28 H 0.06 0.37 8.14 -51.92 -0.42 -0.06 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.41 4.65 7.79 -40.82 -0.32 4.33 16 32 H 0.07 0.67 7.50 -51.93 -0.39 0.28 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.40 5.36 8.15 -40.82 -0.33 5.03 16 36 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.11 2.75 6.53 -52.49 -0.34 2.41 16 38 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 39 H 0.09 2.25 8.06 -52.49 -0.42 1.83 16 40 H 0.10 2.32 6.45 -52.48 -0.34 1.98 16 LS Contribution 340.67 15.07 5.13 5.13 Total: -1.00 -30.63 340.67 -7.74 -38.37 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -5.47 Total: 12.52 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -2.86 Total: -12.13 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.33 Total: -38.15 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.16 Total: -18.64 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.04 Total: 12.90 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.63 -7.74 -38.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603634538.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.503 kcal (2) G-P(sol) polarization free energy of solvation -30.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds