Wall clock time and date at job start Tue Mar 31 2020 06:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.47206 * 2 1 4 4 O 1.21284 * 119.99732 * 0.02562 * 3 2 1 5 5 N 1.34768 * 120.00247 * 179.72444 * 3 2 1 6 6 C 1.46500 * 120.00095 * 180.27490 * 5 3 2 7 7 H 1.09004 * 109.47178 * 35.00887 * 6 5 3 8 8 C 1.52998 * 109.47559 * 275.00353 * 6 5 3 9 9 C 1.50705 * 109.46818 * 155.00235 * 6 5 3 10 10 O 1.21275 * 120.00159 * 0.02562 * 9 6 5 11 11 N 1.34782 * 119.99862 * 180.02562 * 9 6 5 12 12 C 1.39233 * 119.99876 * 176.71133 * 11 9 6 13 13 C 1.39489 * 119.82910 * 217.47415 * 12 11 9 14 14 C 1.36379 * 120.16541 * 179.75919 * 13 12 11 15 15 C 1.40871 * 119.82697 * 0.51612 * 14 13 12 16 16 C 1.41150 * 120.16186 * 179.71721 * 15 14 13 17 17 H 1.08001 * 120.00037 * 157.93286 * 16 15 14 18 18 C 1.39907 * 120.00104 * 337.93315 * 16 15 14 19 19 N 1.30875 * 120.00172 * 327.64927 * 18 16 15 20 20 Si 1.86806 * 119.99769 * 147.64417 * 18 16 15 21 21 H 1.48501 * 109.46758 * 94.99369 * 20 18 16 22 22 H 1.48503 * 109.46964 * 214.98771 * 20 18 16 23 23 H 1.48495 * 109.47151 * 334.99230 * 20 18 16 24 24 C 1.40871 * 119.67458 * 359.73843 * 15 14 13 25 25 C 1.36373 * 119.82726 * 0.02562 * 24 15 14 26 26 H 1.09001 * 109.47083 * 299.99073 * 1 2 3 27 27 H 1.08992 * 109.47622 * 59.99542 * 1 2 3 28 28 H 1.09009 * 109.46957 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47083 * 240.00927 * 2 1 3 30 30 H 1.08992 * 109.47622 * 120.00458 * 2 1 3 31 31 H 0.97004 * 120.00020 * 0.28467 * 5 3 2 32 32 H 1.08998 * 109.47297 * 179.97438 * 8 6 5 33 33 H 1.08997 * 109.47011 * 300.00175 * 8 6 5 34 34 H 1.08998 * 109.46772 * 59.99877 * 8 6 5 35 35 H 0.97004 * 119.99666 * 356.70989 * 11 9 6 36 36 H 1.07996 * 119.91633 * 0.02562 * 13 12 11 37 37 H 1.07998 * 120.08357 * 180.25234 * 14 13 12 38 38 H 0.96992 * 120.00001 * 179.97438 * 19 18 16 39 39 H 1.08000 * 120.08724 * 179.97438 * 24 15 14 40 40 H 1.08003 * 119.91531 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3573 1.6671 0.0056 6 6 3.8456 3.0484 0.0117 7 1 3.1709 3.6697 0.6008 8 6 3.9022 3.5757 -1.4234 9 6 5.2249 3.0908 0.6173 10 8 5.7487 2.0680 1.0052 11 7 5.8765 4.2655 0.7279 12 6 7.1215 4.3151 1.3493 13 6 7.4541 5.4076 2.1503 14 6 8.6698 5.4610 2.7661 15 6 9.5947 4.4144 2.5827 16 6 10.8572 4.4652 3.2118 17 1 11.4152 3.5554 3.3771 18 6 11.3858 5.6942 3.6213 19 7 11.1197 6.7802 2.9411 20 14 12.4711 5.7850 5.1390 21 1 13.8974 5.7087 4.7327 22 1 12.2259 7.0672 5.8468 23 1 12.1528 4.6513 6.0437 24 6 9.2536 3.3170 1.7679 25 6 8.0323 3.2754 1.1625 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8898 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5138 0.8898 31 1 3.9877 0.9299 0.0055 32 1 4.2651 4.6035 -1.4188 33 1 4.5769 2.9544 -2.0124 34 1 2.9046 3.5449 -1.8614 35 1 5.4780 5.0762 0.3746 36 1 6.7455 6.2110 2.2867 37 1 8.9243 6.3055 3.3893 38 1 11.4859 7.6322 3.2252 39 1 9.9577 2.5111 1.6223 40 1 7.7694 2.4349 0.5372 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603634538.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:48 Heat of formation + Delta-G solvation = -84.613371 kcal Electronic energy + Delta-G solvation = -22174.155518 eV Core-core repulsion = 18759.216013 eV Total energy + Delta-G solvation = -3414.939504 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.65206 -40.51549 -39.09121 -36.37120 -36.00330 -34.87113 -33.79689 -31.89534 -31.42268 -30.55962 -27.07640 -26.07782 -24.60936 -23.32868 -22.50242 -21.31030 -21.08705 -19.33332 -19.00321 -18.29770 -17.32384 -17.06633 -16.94494 -16.53824 -16.23347 -15.76014 -15.34561 -15.13824 -14.70038 -14.45609 -14.38672 -13.98203 -13.84315 -13.67863 -13.40246 -13.30486 -13.06803 -12.84913 -12.69058 -12.67184 -12.61607 -12.32870 -12.01287 -11.91847 -11.60287 -11.16417 -10.96902 -10.80893 -10.50934 -10.21976 -9.49137 -9.03718 -8.74626 -6.24905 0.78475 1.12896 1.35658 1.40857 1.52877 1.57051 1.72486 1.90356 2.18860 2.47883 2.63004 3.55822 3.69752 3.81189 4.00619 4.08919 4.24178 4.29187 4.37851 4.47549 4.60888 4.72238 4.80051 4.89027 5.01553 5.08005 5.08709 5.11737 5.15529 5.24114 5.28581 5.40132 5.41486 5.62934 5.84913 5.99980 6.06734 6.33654 6.47808 6.58571 6.65497 6.87932 6.96532 7.18450 7.29101 8.18877 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.041279 B = 0.002772 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.140651 B =10097.065023 C =10326.034171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.139 4.139 3 C 0.511 3.489 4 O -0.581 6.581 5 N -0.712 5.712 6 C 0.134 3.866 7 H 0.112 0.888 8 C -0.152 4.152 9 C 0.499 3.501 10 O -0.565 6.565 11 N -0.634 5.634 12 C -0.011 4.011 13 C -0.099 4.099 14 C -0.192 4.192 15 C 0.084 3.916 16 C -0.503 4.503 17 H 0.076 0.924 18 C 0.052 3.948 19 N -0.797 5.797 20 Si 0.971 3.029 21 H -0.259 1.259 22 H -0.261 1.261 23 H -0.262 1.262 24 C -0.245 4.245 25 C -0.072 4.072 26 H 0.045 0.955 27 H 0.051 0.949 28 H 0.085 0.915 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.415 0.585 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.416 0.584 36 H 0.122 0.878 37 H 0.098 0.902 38 H 0.295 0.705 39 H 0.093 0.907 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.154 -6.116 -6.178 16.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.179 4.179 3 C 0.300 3.700 4 O -0.461 6.461 5 N -0.365 5.365 6 C 0.025 3.975 7 H 0.130 0.870 8 C -0.210 4.210 9 C 0.286 3.714 10 O -0.444 6.444 11 N -0.279 5.279 12 C -0.104 4.104 13 C -0.119 4.119 14 C -0.211 4.211 15 C 0.081 3.919 16 C -0.531 4.531 17 H 0.094 0.906 18 C -0.168 4.168 19 N -0.420 5.420 20 Si 0.791 3.209 21 H -0.184 1.184 22 H -0.186 1.186 23 H -0.186 1.186 24 C -0.265 4.265 25 C -0.092 4.092 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.103 0.897 29 H 0.137 0.863 30 H 0.128 0.872 31 H 0.252 0.748 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.254 0.746 36 H 0.140 0.860 37 H 0.116 0.884 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.324 -5.921 -5.962 16.606 hybrid contribution 0.951 0.312 0.488 1.114 sum -13.373 -5.608 -5.474 15.500 Atomic orbital electron populations 1.21531 0.93013 1.02711 1.02044 1.21706 0.98428 0.91203 1.06531 1.21491 0.81136 0.93276 0.74136 1.90675 1.56002 1.47949 1.51457 1.45903 1.07820 1.07875 1.74944 1.20685 0.91193 0.86241 0.99334 0.87004 1.22101 1.03640 1.02501 0.92793 1.21074 0.87771 0.83618 0.78892 1.90666 1.69016 1.34376 1.50334 1.42752 1.17505 1.10745 1.56919 1.17085 0.87128 0.99541 1.06660 1.20452 0.97021 0.97607 0.96840 1.20657 0.94144 1.00891 1.05452 1.17918 0.93435 0.91383 0.89116 1.19720 1.03038 0.94441 1.35874 0.90624 1.26728 0.97050 0.94176 0.98854 1.69935 1.36258 1.01368 1.34471 0.85380 0.78347 0.79222 0.77966 1.18375 1.18554 1.18559 1.20737 0.98135 1.01890 1.05766 1.20402 0.92436 0.97400 0.98929 0.93584 0.93020 0.89653 0.86299 0.87165 0.74776 0.89256 0.91589 0.90729 0.74647 0.86008 0.88429 0.89454 0.88849 0.87585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.20 71.98 0.66 -1.28 16 2 C -0.14 -1.92 6.42 29.85 0.19 -1.73 16 3 C 0.51 11.26 7.79 87.66 0.68 11.95 16 4 O -0.58 -16.84 15.64 -3.04 -0.05 -16.89 16 5 N -0.71 -15.76 4.95 -446.09 -2.21 -17.97 16 6 C 0.13 3.18 2.99 44.25 0.13 3.31 16 7 H 0.11 2.70 7.58 -2.39 -0.02 2.68 16 8 C -0.15 -2.85 9.38 71.98 0.68 -2.17 16 9 C 0.50 15.62 7.03 87.66 0.62 16.24 16 10 O -0.56 -21.85 13.45 -3.02 -0.04 -21.89 16 11 N -0.63 -20.29 5.21 -303.10 -1.58 -21.87 16 12 C -0.01 -0.47 6.25 38.57 0.24 -0.23 16 13 C -0.10 -4.38 9.90 22.14 0.22 -4.16 16 14 C -0.19 -9.80 8.74 22.48 0.20 -9.61 16 15 C 0.08 4.57 5.57 -21.28 -0.12 4.46 16 16 C -0.50 -27.12 8.94 23.39 0.21 -26.92 16 17 H 0.08 4.00 8.02 -2.91 -0.02 3.98 16 18 C 0.05 2.55 4.77 85.24 0.41 2.95 16 19 N -0.80 -40.09 11.78 21.82 0.26 -39.83 16 20 Si 0.97 37.00 29.66 68.60 2.03 39.03 16 21 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 22 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 23 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 24 C -0.25 -12.65 9.74 22.48 0.22 -12.43 16 25 C -0.07 -3.38 8.59 22.13 0.19 -3.19 16 26 H 0.04 0.80 8.10 -2.39 -0.02 0.78 16 27 H 0.05 0.84 8.10 -2.39 -0.02 0.82 16 28 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.41 8.66 7.79 -92.71 -0.72 7.94 16 32 H 0.09 1.37 7.50 -2.39 -0.02 1.36 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.42 10.07 8.15 -92.70 -0.76 9.32 16 36 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 37 H 0.10 5.09 6.53 -2.91 -0.02 5.07 16 38 H 0.29 13.14 8.30 -92.71 -0.77 12.37 16 39 H 0.09 4.65 8.06 -2.91 -0.02 4.63 16 40 H 0.11 4.84 6.45 -2.91 -0.02 4.82 16 Total: -1.00 -67.58 340.67 2.53 -65.05 By element: Atomic # 1 Polarization: 37.59 SS G_CDS: -0.41 Total: 37.18 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: 4.52 Total: -22.81 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -3.53 Total: -79.67 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -0.09 Total: -38.78 kcal Atomic # 14 Polarization: 37.00 SS G_CDS: 2.03 Total: 39.03 kcal Total: -67.58 2.53 -65.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603634538.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.568 kcal (2) G-P(sol) polarization free energy of solvation -67.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds