Wall clock time and date at job start Tue Mar 31 2020 06:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50707 * 109.47140 * 2 1 4 4 O 1.21279 * 119.99688 * 0.02562 * 3 2 1 5 5 N 1.34775 * 119.99839 * 180.02562 * 3 2 1 6 6 C 1.46504 * 119.99565 * 179.97438 * 5 3 2 7 7 H 1.09001 * 109.47178 * 325.00355 * 6 5 3 8 8 C 1.53001 * 109.47203 * 84.99939 * 6 5 3 9 9 C 1.50704 * 109.47120 * 204.99787 * 6 5 3 10 10 O 1.21283 * 119.99652 * 333.31902 * 9 6 5 11 11 N 1.34775 * 120.00033 * 153.31569 * 9 6 5 12 12 C 1.37145 * 119.99695 * 4.67123 * 11 9 6 13 13 H 1.07990 * 120.00444 * 329.36847 * 12 11 9 14 14 C 1.38892 * 119.99245 * 149.36498 * 12 11 9 15 15 N 1.31425 * 119.99478 * 159.29473 * 14 12 11 16 16 Si 1.86797 * 120.00396 * 339.29715 * 14 12 11 17 17 H 1.48502 * 109.46614 * 85.51650 * 16 14 12 18 18 H 1.48496 * 109.47260 * 205.51597 * 16 14 12 19 19 H 1.48493 * 109.47100 * 325.51690 * 16 14 12 20 20 C 1.39780 * 120.00096 * 184.67466 * 11 9 6 21 21 C 1.38963 * 120.08082 * 297.62344 * 20 11 9 22 22 C 1.38075 * 119.92153 * 179.78929 * 21 20 11 23 23 C 1.38310 * 120.08089 * 0.46043 * 22 21 20 24 24 C 1.38305 * 120.15570 * 359.79106 * 23 22 21 25 25 C 1.38085 * 120.07552 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.46964 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47135 * 299.99979 * 1 2 3 28 28 H 1.09003 * 109.46833 * 60.00171 * 1 2 3 29 29 H 1.08998 * 109.47602 * 239.99893 * 2 1 3 30 30 H 1.08998 * 109.47273 * 119.99835 * 2 1 3 31 31 H 0.96995 * 120.00764 * 359.97438 * 5 3 2 32 32 H 1.09000 * 109.47307 * 304.89635 * 8 6 5 33 33 H 1.09003 * 109.47110 * 64.88605 * 8 6 5 34 34 H 1.08999 * 109.47465 * 184.88752 * 8 6 5 35 35 H 0.96995 * 120.00043 * 179.97438 * 15 14 12 36 36 H 1.08003 * 120.03225 * 0.02562 * 21 20 11 37 37 H 1.08007 * 119.95973 * 180.22762 * 22 21 20 38 38 H 1.08001 * 119.92266 * 179.76172 * 23 22 21 39 39 H 1.07995 * 119.96125 * 179.97438 * 24 23 22 40 40 H 1.07997 * 120.03774 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8457 3.0484 -0.0011 7 1 3.1729 3.6714 -0.5904 8 6 3.8976 3.5716 1.4357 9 6 5.2270 3.0926 -0.6020 10 8 5.9432 2.1153 -0.5483 11 7 5.6664 4.2182 -1.1991 12 6 4.8956 5.3523 -1.1762 13 1 3.8188 5.2730 -1.1544 14 6 5.5000 6.6028 -1.1811 15 7 4.8192 7.6601 -1.5630 16 14 7.2803 6.7819 -0.6448 17 1 8.1744 6.5148 -1.8000 18 1 7.5114 8.1623 -0.1487 19 1 7.5704 5.8108 0.4405 20 6 6.9077 4.2296 -1.8418 21 6 8.0701 3.9999 -1.1157 22 6 9.2941 4.0076 -1.7546 23 6 9.3650 4.2530 -3.1139 24 6 8.2107 4.4872 -3.8388 25 6 6.9827 4.4762 -3.2073 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.9878 0.9299 -0.0005 32 1 2.9175 3.4588 1.8992 33 1 4.6350 3.0034 2.0029 34 1 4.1774 4.6250 1.4290 35 1 5.2411 8.5335 -1.5661 36 1 8.0157 3.8117 -0.0536 37 1 10.1976 3.8255 -1.1915 38 1 10.3241 4.2622 -3.6104 39 1 8.2697 4.6789 -4.9000 40 1 6.0818 4.6596 -3.7738 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619745300.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:58 Heat of formation + Delta-G solvation = -35.597383 kcal Electronic energy + Delta-G solvation = -23631.493402 eV Core-core repulsion = 20218.679390 eV Total energy + Delta-G solvation = -3412.814011 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.22369 -39.29644 -37.80312 -35.15563 -34.44291 -32.75075 -32.19303 -30.44078 -30.39432 -28.89424 -25.27297 -24.81233 -23.57442 -22.07677 -21.54438 -19.92941 -19.21711 -18.16287 -17.35908 -16.06555 -15.82177 -15.62159 -15.48252 -15.16913 -14.79026 -14.13778 -13.98579 -13.62526 -13.37391 -13.13393 -12.95000 -12.78022 -12.67232 -12.36318 -12.21552 -11.87842 -11.69617 -11.62132 -11.19629 -11.13459 -11.06684 -10.85567 -10.73357 -10.62911 -10.04990 -9.56623 -9.41863 -9.02140 -8.70947 -8.50364 -8.31424 -7.75134 -6.61243 -4.23634 1.83034 1.94773 2.90903 3.09980 3.22837 3.25519 3.30810 3.53625 4.10204 4.18434 4.33680 4.86647 4.92045 5.12909 5.13502 5.38599 5.43185 5.49073 5.59780 5.65588 5.76405 5.77716 5.83325 5.95639 5.97367 6.11402 6.17113 6.23656 6.30185 6.37880 6.54993 6.64392 6.81886 6.86216 7.00517 7.07186 7.19283 7.53828 7.83988 7.86097 8.08578 8.53485 8.69178 9.09317 9.34787 10.46196 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019782 B = 0.005371 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.084406 B = 5211.470136 C = 5889.389035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.143 4.143 3 C 0.509 3.491 4 O -0.543 6.543 5 N -0.715 5.715 6 C 0.141 3.859 7 H 0.114 0.886 8 C -0.147 4.147 9 C 0.480 3.520 10 O -0.581 6.581 11 N -0.413 5.413 12 C -0.362 4.362 13 H 0.117 0.883 14 C 0.081 3.919 15 N -0.847 5.847 16 Si 0.861 3.139 17 H -0.254 1.254 18 H -0.291 1.291 19 H -0.260 1.260 20 C 0.156 3.844 21 C -0.124 4.124 22 C -0.117 4.117 23 C -0.140 4.140 24 C -0.115 4.115 25 C -0.111 4.111 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.405 0.595 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.279 0.721 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.341 -9.711 1.024 9.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.183 4.183 3 C 0.295 3.705 4 O -0.420 6.420 5 N -0.368 5.368 6 C 0.034 3.966 7 H 0.132 0.868 8 C -0.206 4.206 9 C 0.270 3.730 10 O -0.464 6.464 11 N -0.128 5.128 12 C -0.486 4.486 13 H 0.135 0.865 14 C -0.129 4.129 15 N -0.480 5.480 16 Si 0.687 3.313 17 H -0.179 1.179 18 H -0.218 1.218 19 H -0.185 1.185 20 C 0.064 3.936 21 C -0.144 4.144 22 C -0.136 4.136 23 C -0.158 4.158 24 C -0.133 4.133 25 C -0.131 4.131 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.241 0.759 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.064 -9.287 1.016 9.402 hybrid contribution 1.224 0.148 0.252 1.258 sum 2.288 -9.139 1.269 9.506 Atomic orbital electron populations 1.21514 0.93189 1.01187 1.03410 1.21614 0.98439 0.94081 1.04207 1.20719 0.82050 0.91753 0.75971 1.90705 1.55257 1.46437 1.49588 1.45972 1.07143 1.08880 1.74803 1.20616 0.94174 0.83298 0.98553 0.86827 1.21934 1.01815 1.02818 0.94008 1.20444 0.89212 0.83882 0.79489 1.90566 1.58290 1.36396 1.61153 1.41439 1.15091 1.11199 1.45083 1.19222 0.92136 0.81629 1.55653 0.86522 1.25187 0.98605 0.94915 0.94191 1.69753 1.38428 1.00091 1.39733 0.87142 0.85166 0.77377 0.81597 1.17889 1.21836 1.18453 1.17704 0.86144 0.98425 0.91295 1.21204 0.91952 1.01297 0.99978 1.20858 0.96853 1.01105 0.94800 1.20960 0.97948 1.02588 0.94333 1.20914 0.92278 1.00714 0.99437 1.21181 0.98260 1.00398 0.93256 0.92388 0.92016 0.91965 0.89072 0.89112 0.75929 0.91963 0.92866 0.89817 0.91108 0.86194 0.86502 0.86693 0.86322 0.85435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.20 37.16 0.34 -1.12 16 2 C -0.14 -1.59 6.42 -27.88 -0.18 -1.77 16 3 C 0.51 8.15 7.79 -10.98 -0.09 8.06 16 4 O -0.54 -10.73 15.64 5.56 0.09 -10.64 16 5 N -0.71 -11.93 5.06 -54.93 -0.28 -12.21 16 6 C 0.14 2.78 2.28 -69.08 -0.16 2.62 16 7 H 0.11 2.48 5.79 -51.93 -0.30 2.18 16 8 C -0.15 -2.68 9.42 37.16 0.35 -2.33 16 9 C 0.48 10.65 6.70 -10.98 -0.07 10.58 16 10 O -0.58 -13.41 15.41 5.56 0.09 -13.32 16 11 N -0.41 -9.73 2.44 -58.98 -0.14 -9.88 16 12 C -0.36 -9.12 8.65 -14.93 -0.13 -9.25 16 13 H 0.12 3.08 6.35 -52.49 -0.33 2.75 16 14 C 0.08 2.09 5.27 -17.48 -0.09 2.00 16 15 N -0.85 -22.90 13.96 55.49 0.77 -22.13 16 16 Si 0.86 20.33 23.60 -169.99 -4.01 16.32 16 17 H -0.25 -5.92 5.88 56.52 0.33 -5.58 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 19 H -0.26 -6.11 6.08 56.52 0.34 -5.76 16 20 C 0.16 3.54 2.36 -83.70 -0.20 3.34 16 21 C -0.12 -2.65 5.60 -39.37 -0.22 -2.87 16 22 C -0.12 -2.13 9.57 -39.61 -0.38 -2.51 16 23 C -0.14 -2.36 9.94 -39.53 -0.39 -2.75 16 24 C -0.11 -2.05 9.94 -39.61 -0.39 -2.44 16 25 C -0.11 -2.33 8.88 -39.37 -0.35 -2.68 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 28 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.40 6.19 7.80 -40.82 -0.32 5.87 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 1.62 7.73 -51.93 -0.40 1.21 16 35 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.12 2.60 7.56 -52.48 -0.40 2.21 16 37 H 0.12 1.75 8.06 -52.48 -0.42 1.32 16 38 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 39 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.13 2.67 8.06 -52.49 -0.42 2.25 16 LS Contribution 329.87 15.07 4.97 4.97 Total: -1.00 -30.10 329.87 -6.13 -36.23 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -5.66 Total: 11.77 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -1.96 Total: -1.11 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.35 Total: -44.22 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: 0.17 Total: -23.96 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.01 Total: 16.32 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.10 -6.13 -36.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619745300.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.634 kcal (2) G-P(sol) polarization free energy of solvation -30.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds