Wall clock time and date at job start Tue Mar 31 2020 06:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50707 * 109.47140 * 2 1 4 4 O 1.21279 * 119.99688 * 0.02562 * 3 2 1 5 5 N 1.34775 * 119.99839 * 180.02562 * 3 2 1 6 6 C 1.46504 * 119.99565 * 179.97438 * 5 3 2 7 7 H 1.09001 * 109.47178 * 325.00355 * 6 5 3 8 8 C 1.53001 * 109.47203 * 84.99939 * 6 5 3 9 9 C 1.50704 * 109.47120 * 204.99787 * 6 5 3 10 10 O 1.21283 * 119.99652 * 333.31902 * 9 6 5 11 11 N 1.34775 * 120.00033 * 153.31569 * 9 6 5 12 12 C 1.37145 * 119.99695 * 4.67123 * 11 9 6 13 13 H 1.07990 * 120.00444 * 329.36847 * 12 11 9 14 14 C 1.38892 * 119.99245 * 149.36498 * 12 11 9 15 15 N 1.31425 * 119.99478 * 159.29473 * 14 12 11 16 16 Si 1.86797 * 120.00396 * 339.29715 * 14 12 11 17 17 H 1.48502 * 109.46614 * 85.51650 * 16 14 12 18 18 H 1.48496 * 109.47260 * 205.51597 * 16 14 12 19 19 H 1.48493 * 109.47100 * 325.51690 * 16 14 12 20 20 C 1.39780 * 120.00096 * 184.67466 * 11 9 6 21 21 C 1.38963 * 120.08082 * 297.62344 * 20 11 9 22 22 C 1.38075 * 119.92153 * 179.78929 * 21 20 11 23 23 C 1.38310 * 120.08089 * 0.46043 * 22 21 20 24 24 C 1.38305 * 120.15570 * 359.79106 * 23 22 21 25 25 C 1.38085 * 120.07552 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.46964 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47135 * 299.99979 * 1 2 3 28 28 H 1.09003 * 109.46833 * 60.00171 * 1 2 3 29 29 H 1.08998 * 109.47602 * 239.99893 * 2 1 3 30 30 H 1.08998 * 109.47273 * 119.99835 * 2 1 3 31 31 H 0.96995 * 120.00764 * 359.97438 * 5 3 2 32 32 H 1.09000 * 109.47307 * 304.89635 * 8 6 5 33 33 H 1.09003 * 109.47110 * 64.88605 * 8 6 5 34 34 H 1.08999 * 109.47465 * 184.88752 * 8 6 5 35 35 H 0.96995 * 120.00043 * 179.97438 * 15 14 12 36 36 H 1.08003 * 120.03225 * 0.02562 * 21 20 11 37 37 H 1.08007 * 119.95973 * 180.22762 * 22 21 20 38 38 H 1.08001 * 119.92266 * 179.76172 * 23 22 21 39 39 H 1.07995 * 119.96125 * 179.97438 * 24 23 22 40 40 H 1.07997 * 120.03774 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8457 3.0484 -0.0011 7 1 3.1729 3.6714 -0.5904 8 6 3.8976 3.5716 1.4357 9 6 5.2270 3.0926 -0.6020 10 8 5.9432 2.1153 -0.5483 11 7 5.6664 4.2182 -1.1991 12 6 4.8956 5.3523 -1.1762 13 1 3.8188 5.2730 -1.1544 14 6 5.5000 6.6028 -1.1811 15 7 4.8192 7.6601 -1.5630 16 14 7.2803 6.7819 -0.6448 17 1 8.1744 6.5148 -1.8000 18 1 7.5114 8.1623 -0.1487 19 1 7.5704 5.8108 0.4405 20 6 6.9077 4.2296 -1.8418 21 6 8.0701 3.9999 -1.1157 22 6 9.2941 4.0076 -1.7546 23 6 9.3650 4.2530 -3.1139 24 6 8.2107 4.4872 -3.8388 25 6 6.9827 4.4762 -3.2073 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.9878 0.9299 -0.0005 32 1 2.9175 3.4588 1.8992 33 1 4.6350 3.0034 2.0029 34 1 4.1774 4.6250 1.4290 35 1 5.2411 8.5335 -1.5661 36 1 8.0157 3.8117 -0.0536 37 1 10.1976 3.8255 -1.1915 38 1 10.3241 4.2622 -3.6104 39 1 8.2697 4.6789 -4.9000 40 1 6.0818 4.6596 -3.7738 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619745300.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:57 Heat of formation + Delta-G solvation = -55.571995 kcal Electronic energy + Delta-G solvation = -23632.359566 eV Core-core repulsion = 20218.679390 eV Total energy + Delta-G solvation = -3413.680176 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.87179 -40.70849 -39.36335 -36.89194 -35.99061 -34.14133 -33.80179 -31.89824 -31.84891 -30.43129 -27.16642 -26.16504 -24.92674 -23.56797 -22.99709 -21.28917 -20.97490 -19.84807 -18.80424 -17.64756 -17.45709 -17.25584 -16.84010 -16.54823 -16.38584 -15.84994 -15.39648 -15.13432 -14.85161 -14.74335 -14.42434 -14.34080 -14.27780 -13.95805 -13.58728 -13.27348 -13.03403 -12.93406 -12.65658 -12.61377 -12.51688 -12.45346 -12.20125 -12.00551 -11.86311 -11.23581 -10.93456 -10.74292 -10.35111 -10.17048 -9.83011 -9.40360 -8.60684 -6.23718 0.31913 0.44671 1.23150 1.32247 1.38363 1.54636 1.68336 2.00549 2.18005 2.60564 2.75987 2.98941 3.70777 3.85154 4.01253 4.07665 4.15844 4.20405 4.25411 4.25847 4.30436 4.53546 4.63376 4.65511 4.70194 4.74232 4.84900 5.01153 5.08253 5.08998 5.11440 5.30491 5.31319 5.41998 5.48529 5.55286 5.58659 5.90829 5.96518 6.24385 6.55339 6.76530 7.17412 7.26552 7.51430 8.50355 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019782 B = 0.005371 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.084406 B = 5211.470136 C = 5889.389035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.133 4.133 3 C 0.503 3.497 4 O -0.586 6.586 5 N -0.710 5.710 6 C 0.146 3.854 7 H 0.085 0.915 8 C -0.137 4.137 9 C 0.480 3.520 10 O -0.589 6.589 11 N -0.424 5.424 12 C -0.354 4.354 13 H 0.092 0.908 14 C 0.048 3.952 15 N -0.886 5.886 16 Si 0.912 3.088 17 H -0.245 1.245 18 H -0.295 1.295 19 H -0.263 1.263 20 C 0.122 3.878 21 C -0.144 4.144 22 C -0.116 4.116 23 C -0.127 4.127 24 C -0.111 4.111 25 C -0.135 4.135 26 H 0.091 0.909 27 H 0.048 0.952 28 H 0.043 0.957 29 H 0.114 0.886 30 H 0.122 0.878 31 H 0.414 0.586 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.281 0.719 36 H 0.107 0.893 37 H 0.153 0.847 38 H 0.163 0.837 39 H 0.154 0.846 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.806 -11.644 0.626 12.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.173 4.173 3 C 0.292 3.708 4 O -0.466 6.466 5 N -0.363 5.363 6 C 0.037 3.963 7 H 0.103 0.897 8 C -0.196 4.196 9 C 0.270 3.730 10 O -0.473 6.473 11 N -0.139 5.139 12 C -0.480 4.480 13 H 0.109 0.891 14 C -0.159 4.159 15 N -0.522 5.522 16 Si 0.737 3.263 17 H -0.168 1.168 18 H -0.223 1.223 19 H -0.187 1.187 20 C 0.031 3.969 21 C -0.164 4.164 22 C -0.134 4.134 23 C -0.145 4.145 24 C -0.129 4.129 25 C -0.155 4.155 26 H 0.109 0.891 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.132 0.868 30 H 0.140 0.860 31 H 0.252 0.748 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.125 0.875 37 H 0.171 0.829 38 H 0.181 0.819 39 H 0.172 0.828 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.548 -11.258 0.611 11.820 hybrid contribution 0.486 0.641 0.304 0.860 sum 4.034 -10.617 0.914 11.395 Atomic orbital electron populations 1.21537 0.92972 1.02830 1.01903 1.21703 0.98438 0.90408 1.06729 1.21745 0.81116 0.93604 0.74318 1.90689 1.56114 1.48381 1.51449 1.45947 1.07869 1.07630 1.74895 1.20379 0.92271 0.84984 0.98654 0.89702 1.21835 1.02603 1.01819 0.93299 1.20764 0.89804 0.83323 0.79082 1.90535 1.58833 1.36372 1.61605 1.41457 1.15751 1.10796 1.45913 1.19001 0.91360 0.82572 1.55074 0.89088 1.25650 1.01442 0.94580 0.94205 1.69817 1.39987 1.00598 1.41751 0.86346 0.82019 0.76594 0.81312 1.16839 1.22283 1.18735 1.18017 0.85952 1.00759 0.92208 1.21277 0.92913 1.02673 0.99582 1.21347 0.96791 0.99479 0.95829 1.21532 0.99522 0.99623 0.93789 1.21376 0.91272 0.98963 1.01288 1.21300 0.99441 1.01818 0.92908 0.89055 0.93296 0.93818 0.86769 0.86016 0.74832 0.91149 0.91531 0.91545 0.90874 0.87534 0.82915 0.81928 0.82837 0.86927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 9.20 71.98 0.66 -2.03 16 2 C -0.13 -2.66 6.42 29.85 0.19 -2.47 16 3 C 0.50 16.02 7.79 87.66 0.68 16.71 16 4 O -0.59 -23.92 15.64 -3.03 -0.05 -23.97 16 5 N -0.71 -23.71 5.06 -446.08 -2.26 -25.96 16 6 C 0.15 5.96 2.28 44.25 0.10 6.06 16 7 H 0.09 3.99 5.79 -2.39 -0.01 3.97 16 8 C -0.14 -5.13 9.42 71.98 0.68 -4.45 16 9 C 0.48 21.85 6.70 87.66 0.59 22.43 16 10 O -0.59 -27.28 15.41 -3.04 -0.05 -27.33 16 11 N -0.42 -20.56 2.44 -458.89 -1.12 -21.67 16 12 C -0.35 -18.76 8.65 84.02 0.73 -18.03 16 13 H 0.09 5.19 6.35 -2.92 -0.02 5.17 16 14 C 0.05 2.54 5.27 84.91 0.45 2.98 16 15 N -0.89 -49.67 13.96 21.65 0.30 -49.37 16 16 Si 0.91 42.50 23.60 68.60 1.62 44.12 16 17 H -0.24 -10.83 5.88 99.48 0.59 -10.24 16 18 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 19 H -0.26 -12.18 6.08 99.48 0.60 -11.58 16 20 C 0.12 5.50 2.36 38.22 0.09 5.59 16 21 C -0.14 -5.95 5.60 22.41 0.13 -5.82 16 22 C -0.12 -3.77 9.57 22.25 0.21 -3.56 16 23 C -0.13 -3.65 9.94 22.30 0.22 -3.43 16 24 C -0.11 -3.58 9.94 22.25 0.22 -3.36 16 25 C -0.13 -5.58 8.88 22.41 0.20 -5.39 16 26 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 28 H 0.04 1.02 8.10 -2.39 -0.02 1.00 16 29 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.41 12.29 7.80 -92.71 -0.72 11.57 16 32 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.07 2.69 7.73 -2.39 -0.02 2.67 16 35 H 0.28 14.78 8.31 -92.71 -0.77 14.01 16 36 H 0.11 4.57 7.56 -2.91 -0.02 4.55 16 37 H 0.15 3.80 8.06 -2.91 -0.02 3.77 16 38 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 39 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 40 H 0.11 4.86 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -68.41 329.87 3.70 -64.71 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: 0.10 Total: 34.22 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 5.15 Total: 5.24 kcal Atomic # 7 Polarization: -93.93 SS G_CDS: -3.07 Total: -97.00 kcal Atomic # 8 Polarization: -51.21 SS G_CDS: -0.09 Total: -51.30 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.62 Total: 44.12 kcal Total: -68.41 3.70 -64.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619745300.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.142 kcal (2) G-P(sol) polarization free energy of solvation -68.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds