Wall clock time and date at job start Tue Mar 31 2020 06:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.46901 * 2 1 4 4 O 1.21301 * 120.00497 * 359.97438 * 3 2 1 5 5 C 1.46827 * 119.99792 * 180.02562 * 3 2 1 6 6 C 1.40064 * 120.10348 * 179.97438 * 5 3 2 7 7 C 1.36597 * 119.90017 * 180.02562 * 6 5 3 8 8 C 1.39216 * 120.10163 * 359.97438 * 7 6 5 9 9 N 1.39304 * 119.89759 * 179.97438 * 8 7 6 10 10 C 1.34779 * 120.00324 * 323.87858 * 9 8 7 11 11 O 1.21574 * 119.99864 * 4.58967 * 10 9 8 12 12 N 1.34769 * 120.00015 * 184.59199 * 10 9 8 13 13 C 1.46507 * 119.99721 * 179.97438 * 12 10 9 14 14 H 1.08994 * 109.47270 * 325.00018 * 13 12 10 15 15 C 1.52999 * 109.47065 * 85.00156 * 13 12 10 16 16 C 1.50704 * 109.46731 * 204.99590 * 13 12 10 17 17 H 1.07998 * 120.00268 * 331.51552 * 16 13 12 18 18 C 1.37875 * 119.99423 * 151.51070 * 16 13 12 19 19 N 1.31518 * 120.00029 * 173.53157 * 18 16 13 20 20 Si 1.86800 * 120.00477 * 353.53166 * 18 16 13 21 21 H 1.48501 * 109.47307 * 274.36111 * 20 18 16 22 22 H 1.48503 * 109.46978 * 34.35731 * 20 18 16 23 23 H 1.48496 * 109.47278 * 154.35973 * 20 18 16 24 24 C 1.39217 * 120.20584 * 0.27649 * 8 7 6 25 25 C 1.36605 * 120.09898 * 359.44139 * 24 8 7 26 26 H 1.09001 * 109.47135 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47319 * 299.99628 * 1 2 3 28 28 H 1.09005 * 109.47467 * 60.00086 * 1 2 3 29 29 H 1.09001 * 109.47043 * 239.99898 * 2 1 3 30 30 H 1.08993 * 109.47065 * 119.99926 * 2 1 3 31 31 H 1.08007 * 120.04942 * 0.02562 * 6 5 3 32 32 H 1.08006 * 119.94738 * 179.97438 * 7 6 5 33 33 H 0.97003 * 120.00050 * 143.87250 * 9 8 7 34 34 H 0.97001 * 120.00371 * 359.97438 * 12 10 9 35 35 H 1.09004 * 109.47338 * 54.77872 * 15 13 12 36 36 H 1.08996 * 109.47199 * 174.78127 * 15 13 12 37 37 H 1.09001 * 109.46715 * 294.77763 * 15 13 12 38 38 H 0.96996 * 120.00405 * 180.02562 * 19 18 16 39 39 H 1.08000 * 119.95290 * 179.72200 * 24 8 7 40 40 H 1.07994 * 120.05330 * 180.27414 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 1.2440 2.3428 -0.0005 5 6 3.4758 1.6891 -0.0006 6 6 3.9450 3.0088 -0.0011 7 6 5.2889 3.2536 -0.0022 8 6 6.1917 2.1939 -0.0022 9 7 7.5613 2.4485 -0.0038 10 6 8.0509 3.4980 -0.6933 11 8 7.2913 4.2706 -1.2448 12 7 9.3824 3.6909 -0.7713 13 6 9.9146 4.8314 -1.5213 14 1 9.2819 5.0235 -2.3878 15 6 9.9360 6.0684 -0.6211 16 6 11.3156 4.5204 -1.9811 17 1 11.9335 3.8430 -1.4104 18 6 11.8086 5.1008 -3.1305 19 7 13.0695 4.9317 -3.4640 20 14 10.6856 6.1273 -4.2143 21 1 9.9622 5.2391 -5.1594 22 1 9.7048 6.8508 -3.3659 23 1 11.4969 7.1080 -4.9793 24 6 5.7300 0.8805 -0.0069 25 6 4.3879 0.6261 0.0000 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.2454 3.8316 -0.0007 32 1 5.6516 4.2710 -0.0030 33 1 8.1626 1.8704 0.4914 34 1 9.9884 3.0746 -0.3310 35 1 10.4921 5.8455 0.2895 36 1 10.4168 6.8927 -1.1478 37 1 8.9145 6.3481 -0.3638 38 1 13.4164 5.3402 -4.2724 39 1 6.4340 0.0615 -0.0114 40 1 4.0306 -0.3931 0.0008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000626731370.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:04 Heat of formation + Delta-G solvation = -47.211926 kcal Electronic energy + Delta-G solvation = -22095.456177 eV Core-core repulsion = 18682.138521 eV Total energy + Delta-G solvation = -3413.317656 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.63445 -39.71398 -38.13906 -35.34707 -34.42052 -33.20382 -32.45937 -31.14601 -30.53687 -29.05620 -25.45497 -25.25793 -23.52230 -22.36103 -21.38479 -20.01211 -19.72890 -18.51794 -17.80512 -16.84574 -16.50780 -15.75365 -15.64406 -15.31381 -14.86464 -14.44721 -14.27182 -14.02079 -13.59247 -13.52787 -13.36810 -12.86913 -12.65989 -12.55934 -12.42061 -12.40212 -12.02490 -11.62552 -11.44641 -11.29150 -11.16819 -10.89338 -10.59999 -10.27811 -9.95575 -9.86056 -9.57651 -9.29409 -9.10510 -8.74884 -8.40539 -7.98991 -6.28832 -4.32457 0.56769 1.37858 2.29645 2.92785 3.24377 3.31681 3.38876 3.48211 3.85118 3.87420 4.28201 4.59169 4.63683 4.76475 4.82832 4.83751 5.01624 5.11104 5.24702 5.31056 5.49408 5.49960 5.60627 5.63927 5.90372 5.90875 6.07438 6.21654 6.29124 6.36238 6.46402 6.52593 6.62017 6.78926 6.97651 7.01566 7.25067 7.35744 7.43518 7.46795 8.16245 8.52574 8.71144 8.96481 9.32693 10.82745 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.032747 B = 0.002938 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.822190 B = 9528.181360 C = 9743.007098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.170 4.170 3 C 0.398 3.602 4 O -0.462 6.462 5 C -0.208 4.208 6 C -0.038 4.038 7 C -0.137 4.137 8 C 0.217 3.783 9 N -0.694 5.694 10 C 0.691 3.309 11 O -0.582 6.582 12 N -0.711 5.711 13 C 0.249 3.751 14 H 0.050 0.950 15 C -0.150 4.150 16 C -0.533 4.533 17 H 0.079 0.921 18 C 0.082 3.918 19 N -0.887 5.887 20 Si 0.873 3.127 21 H -0.273 1.273 22 H -0.258 1.258 23 H -0.285 1.285 24 C -0.170 4.170 25 C -0.051 4.051 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.133 0.867 32 H 0.148 0.852 33 H 0.407 0.593 34 H 0.392 0.608 35 H 0.045 0.955 36 H 0.056 0.944 37 H 0.029 0.971 38 H 0.269 0.731 39 H 0.131 0.869 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.033 -11.735 9.344 22.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.208 4.208 3 C 0.277 3.723 4 O -0.338 6.338 5 C -0.210 4.210 6 C -0.057 4.057 7 C -0.158 4.158 8 C 0.119 3.881 9 N -0.341 5.341 10 C 0.392 3.608 11 O -0.459 6.459 12 N -0.362 5.362 13 C 0.146 3.854 14 H 0.068 0.932 15 C -0.209 4.209 16 C -0.571 4.571 17 H 0.097 0.903 18 C -0.123 4.123 19 N -0.524 5.524 20 Si 0.699 3.301 21 H -0.198 1.198 22 H -0.182 1.182 23 H -0.211 1.211 24 C -0.191 4.191 25 C -0.070 4.070 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.150 0.850 32 H 0.166 0.834 33 H 0.242 0.758 34 H 0.226 0.774 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.049 0.951 38 H 0.078 0.922 39 H 0.149 0.851 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.833 -10.417 8.637 22.386 hybrid contribution 0.435 -0.187 -0.268 0.544 sum -17.398 -10.604 8.368 22.026 Atomic orbital electron populations 1.21592 0.93819 1.01641 1.03081 1.21984 0.98200 0.96079 1.04521 1.22382 0.87969 0.91009 0.70928 1.90517 1.58476 1.47802 1.36985 1.20386 0.94651 0.94439 1.11480 1.21060 0.95352 0.95999 0.93297 1.21163 0.92156 1.00464 1.02021 1.17882 0.82967 0.93296 0.93977 1.42813 1.06000 1.32063 1.53175 1.16226 0.84054 0.80929 0.79596 1.90884 1.57234 1.46489 1.51329 1.45884 1.03009 1.31559 1.55752 1.19066 0.94599 0.81419 0.90315 0.93212 1.22285 0.98778 0.99529 1.00309 1.20968 0.96011 1.30002 1.10143 0.90311 1.24887 0.94951 0.95544 0.96889 1.69877 1.13327 1.43954 1.25201 0.86927 0.81113 0.80819 0.81260 1.19845 1.18243 1.21098 1.20644 0.96249 0.95025 1.07192 1.20880 0.92200 0.98409 0.95465 0.92164 0.92180 0.92137 0.88390 0.88433 0.84953 0.83439 0.75753 0.77446 0.93578 0.92514 0.95142 0.92156 0.85140 0.85059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.20 37.16 0.34 -0.72 16 2 C -0.17 -1.21 5.02 -27.89 -0.14 -1.35 16 3 C 0.40 4.39 7.11 -30.84 -0.22 4.17 16 4 O -0.46 -6.57 15.96 5.54 0.09 -6.48 16 5 C -0.21 -2.39 5.87 -105.05 -0.62 -3.01 16 6 C -0.04 -0.51 9.54 -39.49 -0.38 -0.89 16 7 C -0.14 -2.03 8.61 -39.81 -0.34 -2.38 16 8 C 0.22 2.92 6.28 -83.74 -0.53 2.39 16 9 N -0.69 -9.43 5.31 -14.22 -0.08 -9.51 16 10 C 0.69 12.72 8.36 -86.92 -0.73 12.00 16 11 O -0.58 -12.83 13.47 5.30 0.07 -12.75 16 12 N -0.71 -13.47 5.07 -59.81 -0.30 -13.77 16 13 C 0.25 5.73 2.12 -69.08 -0.15 5.58 16 14 H 0.05 1.26 5.04 -51.93 -0.26 1.00 16 15 C -0.15 -3.21 9.24 37.16 0.34 -2.86 16 16 C -0.53 -13.90 9.05 -34.44 -0.31 -14.21 16 17 H 0.08 2.15 8.04 -52.49 -0.42 1.73 16 18 C 0.08 2.24 5.47 -17.82 -0.10 2.15 16 19 N -0.89 -25.64 13.96 55.43 0.77 -24.87 16 20 Si 0.87 21.17 26.47 -169.99 -4.50 16.67 16 21 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.26 -6.15 6.49 56.52 0.37 -5.78 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 C -0.17 -1.77 9.90 -39.81 -0.39 -2.16 16 25 C -0.05 -0.47 9.42 -39.48 -0.37 -0.85 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 28 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 29 H 0.10 0.55 8.08 -51.93 -0.42 0.13 16 30 H 0.10 0.50 8.08 -51.93 -0.42 0.08 16 31 H 0.13 1.75 7.64 -52.48 -0.40 1.35 16 32 H 0.15 2.48 6.28 -52.48 -0.33 2.16 16 33 H 0.41 4.03 8.84 -40.82 -0.36 3.67 16 34 H 0.39 6.34 8.60 -40.82 -0.35 5.99 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 1.24 7.41 -51.93 -0.39 0.85 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 40 H 0.13 0.78 7.03 -52.49 -0.37 0.41 16 LS Contribution 338.18 15.07 5.10 5.10 Total: -1.00 -32.71 338.18 -7.85 -40.56 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -5.42 Total: 7.22 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -3.58 Total: -2.15 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.39 Total: -48.15 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: 0.16 Total: -19.23 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.50 Total: 16.67 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.71 -7.85 -40.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000626731370.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.652 kcal (2) G-P(sol) polarization free energy of solvation -32.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds