Wall clock time and date at job start Tue Mar 31 2020 06:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50698 * 109.46901 * 2 1 4 4 O 1.21301 * 120.00497 * 359.97438 * 3 2 1 5 5 C 1.46827 * 119.99792 * 180.02562 * 3 2 1 6 6 C 1.40064 * 120.10348 * 179.97438 * 5 3 2 7 7 C 1.36597 * 119.90017 * 180.02562 * 6 5 3 8 8 C 1.39216 * 120.10163 * 359.97438 * 7 6 5 9 9 N 1.39304 * 119.89759 * 179.97438 * 8 7 6 10 10 C 1.34779 * 120.00324 * 323.87858 * 9 8 7 11 11 O 1.21574 * 119.99864 * 4.58967 * 10 9 8 12 12 N 1.34769 * 120.00015 * 184.59199 * 10 9 8 13 13 C 1.46507 * 119.99721 * 179.97438 * 12 10 9 14 14 H 1.08994 * 109.47270 * 325.00018 * 13 12 10 15 15 C 1.52999 * 109.47065 * 85.00156 * 13 12 10 16 16 C 1.50704 * 109.46731 * 204.99590 * 13 12 10 17 17 H 1.07998 * 120.00268 * 331.51552 * 16 13 12 18 18 C 1.37875 * 119.99423 * 151.51070 * 16 13 12 19 19 N 1.31518 * 120.00029 * 173.53157 * 18 16 13 20 20 Si 1.86800 * 120.00477 * 353.53166 * 18 16 13 21 21 H 1.48501 * 109.47307 * 274.36111 * 20 18 16 22 22 H 1.48503 * 109.46978 * 34.35731 * 20 18 16 23 23 H 1.48496 * 109.47278 * 154.35973 * 20 18 16 24 24 C 1.39217 * 120.20584 * 0.27649 * 8 7 6 25 25 C 1.36605 * 120.09898 * 359.44139 * 24 8 7 26 26 H 1.09001 * 109.47135 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47319 * 299.99628 * 1 2 3 28 28 H 1.09005 * 109.47467 * 60.00086 * 1 2 3 29 29 H 1.09001 * 109.47043 * 239.99898 * 2 1 3 30 30 H 1.08993 * 109.47065 * 119.99926 * 2 1 3 31 31 H 1.08007 * 120.04942 * 0.02562 * 6 5 3 32 32 H 1.08006 * 119.94738 * 179.97438 * 7 6 5 33 33 H 0.97003 * 120.00050 * 143.87250 * 9 8 7 34 34 H 0.97001 * 120.00371 * 359.97438 * 12 10 9 35 35 H 1.09004 * 109.47338 * 54.77872 * 15 13 12 36 36 H 1.08996 * 109.47199 * 174.78127 * 15 13 12 37 37 H 1.09001 * 109.46715 * 294.77763 * 15 13 12 38 38 H 0.96996 * 120.00405 * 180.02562 * 19 18 16 39 39 H 1.08000 * 119.95290 * 179.72200 * 24 8 7 40 40 H 1.07994 * 120.05330 * 180.27414 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 1.2440 2.3428 -0.0005 5 6 3.4758 1.6891 -0.0006 6 6 3.9450 3.0088 -0.0011 7 6 5.2889 3.2536 -0.0022 8 6 6.1917 2.1939 -0.0022 9 7 7.5613 2.4485 -0.0038 10 6 8.0509 3.4980 -0.6933 11 8 7.2913 4.2706 -1.2448 12 7 9.3824 3.6909 -0.7713 13 6 9.9146 4.8314 -1.5213 14 1 9.2819 5.0235 -2.3878 15 6 9.9360 6.0684 -0.6211 16 6 11.3156 4.5204 -1.9811 17 1 11.9335 3.8430 -1.4104 18 6 11.8086 5.1008 -3.1305 19 7 13.0695 4.9317 -3.4640 20 14 10.6856 6.1273 -4.2143 21 1 9.9622 5.2391 -5.1594 22 1 9.7048 6.8508 -3.3659 23 1 11.4969 7.1080 -4.9793 24 6 5.7300 0.8805 -0.0069 25 6 4.3879 0.6261 0.0000 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.2454 3.8316 -0.0007 32 1 5.6516 4.2710 -0.0030 33 1 8.1626 1.8704 0.4914 34 1 9.9884 3.0746 -0.3310 35 1 10.4921 5.8455 0.2895 36 1 10.4168 6.8927 -1.1478 37 1 8.9145 6.3481 -0.3638 38 1 13.4164 5.3402 -4.2724 39 1 6.4340 0.0615 -0.0114 40 1 4.0306 -0.3931 0.0008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000626731370.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:04 Heat of formation + Delta-G solvation = -69.535656 kcal Electronic energy + Delta-G solvation = -22096.424206 eV Core-core repulsion = 18682.138521 eV Total energy + Delta-G solvation = -3414.285685 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.80675 -40.78363 -39.24505 -36.94628 -35.77062 -34.43262 -33.85056 -32.05691 -31.97623 -30.33553 -27.32039 -26.21263 -24.55564 -23.30311 -22.76949 -21.63299 -20.62371 -20.01110 -18.95134 -18.32412 -17.79477 -17.02445 -16.61021 -16.38021 -16.28301 -15.96772 -15.34068 -15.14507 -15.02892 -14.57944 -14.50215 -14.27262 -14.25506 -13.73020 -13.64833 -13.33503 -13.06740 -13.06010 -12.83647 -12.64152 -12.42223 -12.17994 -11.97335 -11.88586 -11.48494 -11.27430 -11.13727 -10.83009 -10.62914 -10.04867 -9.97254 -9.12160 -8.39825 -6.45131 -0.37416 0.46417 1.28685 1.34690 1.37958 1.44891 1.67295 2.12508 2.26691 2.86720 2.96395 3.10725 3.34958 3.81951 3.95634 4.12450 4.31082 4.33561 4.34153 4.42851 4.53215 4.56299 4.72098 4.81525 4.84490 5.00503 5.04536 5.06997 5.10749 5.19924 5.26317 5.35235 5.35786 5.40194 5.44280 5.51066 5.67770 5.92842 5.96589 6.26192 6.59652 6.61935 7.10538 7.21742 7.54883 8.74911 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.032747 B = 0.002938 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.822190 B = 9528.181360 C = 9743.007098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.164 4.164 3 C 0.396 3.604 4 O -0.505 6.505 5 C -0.211 4.211 6 C -0.057 4.057 7 C -0.159 4.159 8 C 0.193 3.807 9 N -0.673 5.673 10 C 0.693 3.307 11 O -0.621 6.621 12 N -0.709 5.709 13 C 0.254 3.746 14 H 0.028 0.972 15 C -0.144 4.144 16 C -0.526 4.526 17 H 0.061 0.939 18 C 0.036 3.964 19 N -0.928 5.928 20 Si 0.922 3.078 21 H -0.276 1.276 22 H -0.255 1.255 23 H -0.278 1.278 24 C -0.155 4.155 25 C -0.032 4.032 26 H 0.085 0.915 27 H 0.045 0.955 28 H 0.042 0.958 29 H 0.125 0.875 30 H 0.130 0.870 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.427 0.573 34 H 0.407 0.593 35 H 0.060 0.940 36 H 0.049 0.951 37 H 0.034 0.966 38 H 0.271 0.729 39 H 0.168 0.832 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.165 -14.903 10.097 25.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.200 4.200 3 C 0.278 3.722 4 O -0.384 6.384 5 C -0.213 4.213 6 C -0.076 4.076 7 C -0.180 4.180 8 C 0.096 3.904 9 N -0.322 5.322 10 C 0.393 3.607 11 O -0.502 6.502 12 N -0.362 5.362 13 C 0.150 3.850 14 H 0.046 0.954 15 C -0.203 4.203 16 C -0.564 4.564 17 H 0.079 0.921 18 C -0.165 4.165 19 N -0.566 5.566 20 Si 0.747 3.253 21 H -0.202 1.202 22 H -0.179 1.179 23 H -0.203 1.203 24 C -0.175 4.175 25 C -0.050 4.050 26 H 0.104 0.896 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.143 0.857 30 H 0.148 0.852 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.266 0.734 34 H 0.243 0.757 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.080 0.920 39 H 0.185 0.815 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -18.970 -13.644 9.438 25.201 hybrid contribution 0.690 0.704 -0.415 1.069 sum -18.280 -12.941 9.023 24.146 Atomic orbital electron populations 1.21620 0.94384 1.02783 1.01598 1.22074 0.97697 0.93105 1.07155 1.23037 0.87316 0.92641 0.69228 1.90515 1.59273 1.49576 1.39061 1.20676 0.95845 0.94080 1.10728 1.21027 0.94674 0.97237 0.94669 1.20957 0.93172 0.99701 1.04158 1.18118 0.82210 0.94433 0.95639 1.42421 1.06624 1.30804 1.52357 1.16261 0.83293 0.81542 0.79581 1.90872 1.58034 1.48227 1.53045 1.45445 1.03770 1.31148 1.55806 1.18756 0.92469 0.83281 0.90525 0.95438 1.22176 0.99194 0.98450 1.00433 1.21152 0.97079 1.28695 1.09472 0.92089 1.25512 0.95839 0.96863 0.98300 1.69966 1.14756 1.45807 1.26103 0.86138 0.79650 0.79710 0.79826 1.20167 1.17865 1.20311 1.21041 0.97446 0.94182 1.04877 1.21388 0.91182 0.99894 0.92565 0.89595 0.93578 0.93890 0.85692 0.85223 0.86404 0.86682 0.73399 0.75750 0.92090 0.93237 0.94733 0.91991 0.81460 0.80059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.20 71.98 0.66 -1.14 16 2 C -0.16 -1.63 5.02 29.85 0.15 -1.48 16 3 C 0.40 7.99 7.11 27.93 0.20 8.19 16 4 O -0.51 -14.51 15.96 -3.10 -0.05 -14.56 16 5 C -0.21 -4.45 5.87 -20.14 -0.12 -4.57 16 6 C -0.06 -1.58 9.54 22.33 0.21 -1.36 16 7 C -0.16 -4.84 8.61 22.12 0.19 -4.65 16 8 C 0.19 4.88 6.28 38.42 0.24 5.12 16 9 N -0.67 -17.23 5.31 -317.15 -1.68 -18.92 16 10 C 0.69 25.20 8.36 179.06 1.50 26.69 16 11 O -0.62 -27.94 13.47 -3.95 -0.05 -27.99 16 12 N -0.71 -26.40 5.07 -461.42 -2.34 -28.74 16 13 C 0.25 11.66 2.12 44.24 0.09 11.75 16 14 H 0.03 1.41 5.04 -2.39 -0.01 1.39 16 15 C -0.14 -6.07 9.24 71.98 0.66 -5.40 16 16 C -0.53 -27.50 9.05 25.60 0.23 -27.27 16 17 H 0.06 3.35 8.04 -2.91 -0.02 3.33 16 18 C 0.04 1.96 5.47 84.65 0.46 2.42 16 19 N -0.93 -54.21 13.96 21.45 0.30 -53.91 16 20 Si 0.92 43.97 26.47 68.60 1.82 45.79 16 21 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 22 H -0.25 -11.89 6.49 99.48 0.65 -11.24 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 24 C -0.16 -2.55 9.90 22.12 0.22 -2.33 16 25 C -0.03 -0.45 9.42 22.33 0.21 -0.24 16 26 H 0.09 0.61 8.14 -2.39 -0.02 0.60 16 27 H 0.05 0.69 8.10 -2.39 -0.02 0.67 16 28 H 0.04 0.67 8.10 -2.38 -0.02 0.65 16 29 H 0.13 0.67 8.08 -2.39 -0.02 0.65 16 30 H 0.13 0.55 8.08 -2.39 -0.02 0.53 16 31 H 0.12 3.44 7.64 -2.91 -0.02 3.42 16 32 H 0.12 4.20 6.28 -2.91 -0.02 4.18 16 33 H 0.43 7.29 8.84 -92.71 -0.82 6.47 16 34 H 0.41 12.64 8.60 -92.71 -0.80 11.84 16 35 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.05 2.13 7.41 -2.39 -0.02 2.11 16 37 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 39 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 40 H 0.18 0.76 7.03 -2.91 -0.02 0.74 16 Total: -1.00 -74.74 338.18 2.30 -72.44 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -0.60 Total: 20.17 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 4.92 Total: 5.73 kcal Atomic # 7 Polarization: -97.84 SS G_CDS: -3.73 Total: -101.57 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -0.10 Total: -42.55 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.82 Total: 45.79 kcal Total: -74.74 2.30 -72.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000626731370.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.901 kcal (2) G-P(sol) polarization free energy of solvation -74.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds