Wall clock time and date at job start Tue Mar 31 2020 06:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50699 * 109.47114 * 2 1 4 4 O 1.21305 * 119.99967 * 359.97438 * 3 2 1 5 5 C 1.46830 * 120.00327 * 180.02562 * 3 2 1 6 6 C 1.40070 * 120.09913 * 359.71942 * 5 3 2 7 7 C 1.36601 * 119.89642 * 179.78902 * 6 5 3 8 8 C 1.39222 * 120.10106 * 0.49156 * 7 6 5 9 9 N 1.39297 * 119.89607 * 179.71805 * 8 7 6 10 10 C 1.34775 * 120.00137 * 213.59537 * 9 8 7 11 11 O 1.21582 * 119.99663 * 5.32578 * 10 9 8 12 12 N 1.34775 * 120.00203 * 185.32277 * 10 9 8 13 13 C 1.46501 * 119.99900 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.46932 * 179.97438 * 13 12 10 15 15 C 1.50706 * 109.47060 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99820 * 0.02562 * 15 14 13 17 17 C 1.37871 * 119.99852 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00396 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 120.00010 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47035 * 59.99579 * 19 17 15 21 21 H 1.48494 * 109.47329 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47075 * 299.99998 * 19 17 15 23 23 C 1.39225 * 120.20376 * 359.73907 * 8 7 6 24 24 C 1.36594 * 120.10024 * 0.02562 * 23 8 7 25 25 H 1.09002 * 109.47208 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47517 * 299.99988 * 1 2 3 27 27 H 1.09002 * 109.47539 * 60.00307 * 1 2 3 28 28 H 1.09002 * 109.47539 * 119.99692 * 2 1 3 29 29 H 1.09001 * 109.47517 * 240.00012 * 2 1 3 30 30 H 1.08001 * 120.04709 * 0.02562 * 6 5 3 31 31 H 1.08004 * 119.94654 * 180.22880 * 7 6 5 32 32 H 0.97000 * 119.99984 * 33.60168 * 9 8 7 33 33 H 0.97001 * 120.00316 * 0.02562 * 12 10 9 34 34 H 1.09002 * 109.46959 * 299.99632 * 13 12 10 35 35 H 1.09003 * 109.47500 * 59.99925 * 13 12 10 36 36 H 1.08994 * 109.47200 * 299.99873 * 14 13 12 37 37 H 1.08997 * 109.46986 * 60.00128 * 14 13 12 38 38 H 0.97004 * 119.99946 * 179.97438 * 18 17 15 39 39 H 1.07995 * 119.94665 * 179.97438 * 23 8 7 40 40 H 1.08001 * 120.05220 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2440 2.3428 -0.0005 5 6 3.4758 1.6892 -0.0006 6 6 4.3879 0.6262 0.0048 7 6 5.7300 0.8806 -0.0001 8 6 6.1917 2.1940 -0.0001 9 7 7.5612 2.4486 0.0008 10 6 8.0457 3.5277 0.6467 11 8 7.3013 4.2248 1.3087 12 7 9.3552 3.8342 0.5588 13 6 9.8818 5.0069 1.2613 14 6 11.3843 5.1268 0.9984 15 6 11.9259 6.3335 1.7206 16 1 11.2647 6.9527 2.3086 17 6 13.2655 6.6470 1.6305 18 7 14.0708 5.8928 0.9148 19 14 13.9371 8.1425 2.5263 20 1 13.7007 7.9933 3.9848 21 1 15.3953 8.2589 2.2710 22 1 13.2491 9.3636 2.0358 23 6 5.2889 3.2538 -0.0006 24 6 3.9450 3.0089 -0.0005 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 4.0306 -0.3930 0.0090 31 1 6.4341 0.0615 0.0003 32 1 8.1663 1.8492 -0.4635 33 1 9.9490 3.2782 0.0303 34 1 9.3769 5.9033 0.9012 35 1 9.7083 4.8974 2.3319 36 1 11.8889 4.2304 1.3588 37 1 11.5582 5.2361 -0.0721 38 1 15.0132 6.1136 0.8512 39 1 5.6516 4.2711 -0.0002 40 1 3.2453 3.8316 -0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000626733934.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:56 Heat of formation + Delta-G solvation = -54.587642 kcal Electronic energy + Delta-G solvation = -21400.478285 eV Core-core repulsion = 17986.840794 eV Total energy + Delta-G solvation = -3413.637491 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.80074 -39.84036 -38.25363 -35.26485 -34.64454 -33.27128 -32.91364 -31.26280 -30.51116 -29.19181 -25.67333 -24.70326 -23.42698 -22.42758 -21.21760 -20.80556 -19.78344 -18.44068 -17.80785 -16.94883 -16.37459 -15.87346 -15.70762 -15.43189 -14.83456 -14.63759 -14.45279 -14.19499 -13.84580 -13.74939 -13.53926 -13.29498 -12.95157 -12.66845 -12.48481 -12.32500 -12.07887 -11.49652 -11.38361 -11.27691 -11.08356 -10.70226 -10.55178 -10.34931 -10.16576 -9.84245 -9.65142 -9.35787 -9.22712 -8.72366 -8.46091 -8.16543 -6.14215 -4.17387 0.46774 1.26773 2.19711 2.69034 3.23604 3.28579 3.32565 3.36027 3.72691 3.80058 4.27855 4.42940 4.52108 4.68510 4.72745 4.77652 4.93897 5.12804 5.21706 5.23052 5.35406 5.43432 5.52084 5.59150 5.78716 5.85889 5.96126 6.03821 6.20474 6.25008 6.27267 6.37813 6.64910 6.76595 6.82753 6.95601 7.36576 7.46665 7.54057 7.83745 8.05645 8.23269 8.65007 8.88248 9.47780 10.97253 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.053334 B = 0.002201 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.862621 B =12716.027750 C =13108.940304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.170 4.170 3 C 0.398 3.602 4 O -0.460 6.460 5 C -0.207 4.207 6 C -0.048 4.048 7 C -0.170 4.170 8 C 0.217 3.783 9 N -0.691 5.691 10 C 0.695 3.305 11 O -0.574 6.574 12 N -0.729 5.729 13 C 0.137 3.863 14 C 0.013 3.987 15 C -0.523 4.523 16 H 0.060 0.940 17 C 0.060 3.940 18 N -0.894 5.894 19 Si 0.898 3.102 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.139 4.139 24 C -0.035 4.035 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.409 0.591 33 H 0.396 0.604 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.263 0.737 39 H 0.144 0.856 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.387 -15.970 -5.202 25.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.208 4.208 3 C 0.277 3.723 4 O -0.336 6.336 5 C -0.209 4.209 6 C -0.067 4.067 7 C -0.191 4.191 8 C 0.119 3.881 9 N -0.337 5.337 10 C 0.395 3.605 11 O -0.451 6.451 12 N -0.382 5.382 13 C 0.015 3.985 14 C -0.025 4.025 15 C -0.562 4.562 16 H 0.078 0.922 17 C -0.142 4.142 18 N -0.533 5.533 19 Si 0.726 3.274 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.159 4.159 24 C -0.054 4.054 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.151 0.849 31 H 0.149 0.851 32 H 0.244 0.756 33 H 0.230 0.770 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.073 0.927 39 H 0.162 0.838 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -20.159 -14.766 -4.622 25.413 hybrid contribution 1.353 0.109 0.003 1.357 sum -18.807 -14.657 -4.619 24.287 Atomic orbital electron populations 1.21592 0.93767 1.01685 1.03109 1.21985 0.98256 0.96005 1.04524 1.22384 0.87915 0.91062 0.70982 1.90525 1.58445 1.47794 1.36847 1.20403 0.94749 0.94389 1.11314 1.20893 0.92150 0.98497 0.95186 1.20596 0.96317 0.94850 1.07385 1.17851 0.82695 0.93457 0.94116 1.42757 1.06170 1.28696 1.56124 1.16083 0.83450 0.80780 0.80154 1.90938 1.57436 1.52037 1.44699 1.45615 1.06468 1.32038 1.54057 1.21715 0.97250 0.84192 0.95336 1.19333 0.87247 0.98004 0.97872 1.20988 0.93774 1.10648 1.30773 0.92213 1.24992 0.96972 0.96947 0.95331 1.69941 1.04812 1.38504 1.40004 0.86553 0.77728 0.82929 0.80222 1.20084 1.21226 1.20073 1.21024 0.92295 1.00097 1.02519 1.21045 0.95256 0.96094 0.93032 0.92133 0.92129 0.92148 0.88386 0.88408 0.84938 0.85081 0.75571 0.77021 0.92373 0.92411 0.95886 0.95868 0.92747 0.83828 0.84812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.20 37.15 0.34 -0.63 16 2 C -0.17 -1.07 5.02 -27.89 -0.14 -1.21 16 3 C 0.40 4.03 7.11 -30.84 -0.22 3.81 16 4 O -0.46 -6.17 15.96 5.54 0.09 -6.09 16 5 C -0.21 -2.17 5.87 -105.05 -0.62 -2.78 16 6 C -0.05 -0.40 9.42 -39.49 -0.37 -0.77 16 7 C -0.17 -1.54 9.90 -39.81 -0.39 -1.93 16 8 C 0.22 2.60 6.27 -83.74 -0.53 2.07 16 9 N -0.69 -8.17 5.32 -14.21 -0.08 -8.25 16 10 C 0.70 11.26 8.29 -86.92 -0.72 10.54 16 11 O -0.57 -11.48 14.02 5.29 0.07 -11.41 16 12 N -0.73 -11.85 5.56 -65.22 -0.36 -12.21 16 13 C 0.14 2.80 5.61 -4.04 -0.02 2.77 16 14 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 15 C -0.52 -14.18 9.11 -34.44 -0.31 -14.50 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 19 Si 0.90 21.08 29.54 -169.99 -5.02 16.05 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 C -0.14 -1.87 8.58 -39.81 -0.34 -2.22 16 24 C -0.04 -0.44 9.55 -39.49 -0.38 -0.81 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 27 H 0.06 0.46 8.10 -51.93 -0.42 0.03 16 28 H 0.10 0.46 8.08 -51.93 -0.42 0.04 16 29 H 0.10 0.43 8.09 -51.93 -0.42 0.01 16 30 H 0.13 0.64 7.03 -52.49 -0.37 0.27 16 31 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 32 H 0.41 3.35 8.83 -40.82 -0.36 2.99 16 33 H 0.40 5.35 8.49 -40.82 -0.35 5.01 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.14 2.22 6.41 -52.49 -0.34 1.88 16 40 H 0.13 1.63 7.64 -52.49 -0.40 1.23 16 LS Contribution 345.06 15.07 5.20 5.20 Total: -1.00 -33.14 345.06 -8.87 -42.01 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -5.57 Total: 3.49 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -3.94 Total: -3.95 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.30 Total: -45.32 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: 0.16 Total: -17.49 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.14 -8.87 -42.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000626733934.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.579 kcal (2) G-P(sol) polarization free energy of solvation -33.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds