Wall clock time and date at job start Tue Mar 31 2020 06:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50699 * 109.47114 * 2 1 4 4 O 1.21305 * 119.99967 * 359.97438 * 3 2 1 5 5 C 1.46830 * 120.00327 * 180.02562 * 3 2 1 6 6 C 1.40070 * 120.09913 * 359.71942 * 5 3 2 7 7 C 1.36601 * 119.89642 * 179.78902 * 6 5 3 8 8 C 1.39222 * 120.10106 * 0.49156 * 7 6 5 9 9 N 1.39297 * 119.89607 * 179.71805 * 8 7 6 10 10 C 1.34775 * 120.00137 * 213.59537 * 9 8 7 11 11 O 1.21582 * 119.99663 * 5.32578 * 10 9 8 12 12 N 1.34775 * 120.00203 * 185.32277 * 10 9 8 13 13 C 1.46501 * 119.99900 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.46932 * 179.97438 * 13 12 10 15 15 C 1.50706 * 109.47060 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99820 * 0.02562 * 15 14 13 17 17 C 1.37871 * 119.99852 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00396 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 120.00010 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47035 * 59.99579 * 19 17 15 21 21 H 1.48494 * 109.47329 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47075 * 299.99998 * 19 17 15 23 23 C 1.39225 * 120.20376 * 359.73907 * 8 7 6 24 24 C 1.36594 * 120.10024 * 0.02562 * 23 8 7 25 25 H 1.09002 * 109.47208 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47517 * 299.99988 * 1 2 3 27 27 H 1.09002 * 109.47539 * 60.00307 * 1 2 3 28 28 H 1.09002 * 109.47539 * 119.99692 * 2 1 3 29 29 H 1.09001 * 109.47517 * 240.00012 * 2 1 3 30 30 H 1.08001 * 120.04709 * 0.02562 * 6 5 3 31 31 H 1.08004 * 119.94654 * 180.22880 * 7 6 5 32 32 H 0.97000 * 119.99984 * 33.60168 * 9 8 7 33 33 H 0.97001 * 120.00316 * 0.02562 * 12 10 9 34 34 H 1.09002 * 109.46959 * 299.99632 * 13 12 10 35 35 H 1.09003 * 109.47500 * 59.99925 * 13 12 10 36 36 H 1.08994 * 109.47200 * 299.99873 * 14 13 12 37 37 H 1.08997 * 109.46986 * 60.00128 * 14 13 12 38 38 H 0.97004 * 119.99946 * 179.97438 * 18 17 15 39 39 H 1.07995 * 119.94665 * 179.97438 * 23 8 7 40 40 H 1.08001 * 120.05220 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2440 2.3428 -0.0005 5 6 3.4758 1.6892 -0.0006 6 6 4.3879 0.6262 0.0048 7 6 5.7300 0.8806 -0.0001 8 6 6.1917 2.1940 -0.0001 9 7 7.5612 2.4486 0.0008 10 6 8.0457 3.5277 0.6467 11 8 7.3013 4.2248 1.3087 12 7 9.3552 3.8342 0.5588 13 6 9.8818 5.0069 1.2613 14 6 11.3843 5.1268 0.9984 15 6 11.9259 6.3335 1.7206 16 1 11.2647 6.9527 2.3086 17 6 13.2655 6.6470 1.6305 18 7 14.0708 5.8928 0.9148 19 14 13.9371 8.1425 2.5263 20 1 13.7007 7.9933 3.9848 21 1 15.3953 8.2589 2.2710 22 1 13.2491 9.3636 2.0358 23 6 5.2889 3.2538 -0.0006 24 6 3.9450 3.0089 -0.0005 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 4.0306 -0.3930 0.0090 31 1 6.4341 0.0615 0.0003 32 1 8.1663 1.8492 -0.4635 33 1 9.9490 3.2782 0.0303 34 1 9.3769 5.9033 0.9012 35 1 9.7083 4.8974 2.3319 36 1 11.8889 4.2304 1.3588 37 1 11.5582 5.2361 -0.0721 38 1 15.0132 6.1136 0.8512 39 1 5.6516 4.2711 -0.0002 40 1 3.2453 3.8316 -0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000626733934.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:55 Heat of formation + Delta-G solvation = -76.536962 kcal Electronic energy + Delta-G solvation = -21401.430079 eV Core-core repulsion = 17986.840794 eV Total energy + Delta-G solvation = -3414.589285 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.87050 -40.79909 -39.24260 -36.76101 -35.86731 -34.85833 -33.85555 -32.08077 -31.90844 -30.52460 -27.01224 -25.95428 -24.42724 -23.26453 -22.86498 -22.08338 -20.57650 -19.65772 -18.82465 -18.43695 -17.76650 -16.95109 -16.55111 -16.44506 -16.36223 -16.19106 -15.55473 -15.28347 -15.08460 -14.90759 -14.43880 -14.29062 -14.27352 -13.74957 -13.64072 -13.23880 -13.06854 -12.94384 -12.64280 -12.54883 -12.27650 -12.19053 -11.96958 -11.73239 -11.59098 -11.43923 -11.22947 -10.64724 -10.60383 -10.13843 -10.06835 -9.14439 -8.24556 -6.34522 -0.38881 0.44576 1.33329 1.42022 1.43859 1.50900 1.56838 2.01562 2.40519 2.85598 3.09867 3.10541 3.17838 3.79271 3.93470 4.11521 4.29562 4.31513 4.33941 4.42515 4.48968 4.51803 4.52791 4.83894 4.84730 4.99841 5.05275 5.11113 5.17311 5.21855 5.23110 5.34320 5.38463 5.45686 5.50531 5.58266 5.76990 5.91630 5.93074 6.15745 6.62137 6.78089 6.92753 7.34589 7.38928 8.86847 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.053334 B = 0.002201 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.862621 B =12716.027750 C =13108.940304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.163 4.163 3 C 0.395 3.605 4 O -0.505 6.505 5 C -0.212 4.212 6 C -0.030 4.030 7 C -0.154 4.154 8 C 0.195 3.805 9 N -0.670 5.670 10 C 0.696 3.304 11 O -0.616 6.616 12 N -0.722 5.722 13 C 0.159 3.841 14 C 0.023 3.977 15 C -0.548 4.548 16 H 0.058 0.942 17 C 0.009 3.991 18 N -0.924 5.924 19 Si 0.963 3.037 20 H -0.269 1.269 21 H -0.281 1.281 22 H -0.270 1.270 23 C -0.162 4.162 24 C -0.055 4.055 25 H 0.085 0.915 26 H 0.042 0.958 27 H 0.044 0.956 28 H 0.126 0.874 29 H 0.130 0.870 30 H 0.183 0.817 31 H 0.170 0.830 32 H 0.429 0.571 33 H 0.411 0.589 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.012 0.988 37 H 0.011 0.989 38 H 0.266 0.734 39 H 0.111 0.889 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.579 -19.052 -5.284 27.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.200 4.200 3 C 0.277 3.723 4 O -0.384 6.384 5 C -0.214 4.214 6 C -0.048 4.048 7 C -0.175 4.175 8 C 0.098 3.902 9 N -0.319 5.319 10 C 0.397 3.603 11 O -0.496 6.496 12 N -0.377 5.377 13 C 0.034 3.966 14 C -0.014 4.014 15 C -0.586 4.586 16 H 0.077 0.923 17 C -0.190 4.190 18 N -0.564 5.564 19 Si 0.788 3.212 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.195 1.195 23 C -0.183 4.183 24 C -0.074 4.074 25 H 0.104 0.896 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.144 0.856 29 H 0.148 0.852 30 H 0.200 0.800 31 H 0.188 0.812 32 H 0.268 0.732 33 H 0.248 0.752 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.030 0.970 37 H 0.029 0.971 38 H 0.075 0.925 39 H 0.129 0.871 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -20.352 -17.912 -4.743 27.523 hybrid contribution 1.320 1.000 -0.009 1.656 sum -19.031 -16.912 -4.751 25.900 Atomic orbital electron populations 1.21620 0.94449 1.02773 1.01576 1.22075 0.97648 0.93100 1.07183 1.23049 0.87344 0.92646 0.69244 1.90521 1.59294 1.49586 1.39034 1.20676 0.95859 0.94068 1.10781 1.21406 0.91206 0.99913 0.92304 1.21013 0.97455 0.94062 1.04960 1.18086 0.82062 0.94515 0.95537 1.42403 1.06673 1.27491 1.55302 1.16145 0.82770 0.81377 0.80024 1.90922 1.58324 1.53735 1.46600 1.45227 1.07041 1.31279 1.54117 1.21156 0.94988 0.85400 0.95010 1.19135 0.89215 0.96533 0.96534 1.21428 0.94327 1.11752 1.31125 0.92344 1.25832 0.97306 0.99826 0.96076 1.70039 1.05141 1.40075 1.41130 0.85531 0.77172 0.79391 0.79147 1.19413 1.20581 1.19495 1.20836 0.93297 0.99389 1.04735 1.21004 0.94623 0.97287 0.94486 0.89607 0.93880 0.93650 0.85587 0.85242 0.79978 0.81210 0.73186 0.75236 0.93584 0.93473 0.96963 0.97105 0.92540 0.87103 0.86417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.20 71.98 0.66 -1.00 16 2 C -0.16 -1.42 5.02 29.85 0.15 -1.27 16 3 C 0.40 7.46 7.11 27.94 0.20 7.65 16 4 O -0.51 -13.94 15.96 -3.11 -0.05 -13.99 16 5 C -0.21 -4.11 5.87 -20.14 -0.12 -4.23 16 6 C -0.03 -0.36 9.42 22.33 0.21 -0.15 16 7 C -0.15 -2.16 9.90 22.12 0.22 -1.94 16 8 C 0.19 4.43 6.27 38.43 0.24 4.68 16 9 N -0.67 -15.02 5.32 -317.14 -1.69 -16.70 16 10 C 0.70 22.68 8.29 179.06 1.48 24.16 16 11 O -0.62 -25.59 14.02 -3.97 -0.06 -25.64 16 12 N -0.72 -23.51 5.56 -478.53 -2.66 -26.17 16 13 C 0.16 6.61 5.61 86.38 0.48 7.09 16 14 C 0.02 1.14 5.09 29.85 0.15 1.29 16 15 C -0.55 -30.09 9.11 25.60 0.23 -29.85 16 16 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 17 C 0.01 0.48 5.46 84.65 0.46 0.94 16 18 N -0.92 -53.20 13.29 21.45 0.28 -52.91 16 19 Si 0.96 43.16 29.54 68.60 2.03 45.19 16 20 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 21 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 C -0.16 -4.59 8.58 22.12 0.19 -4.40 16 24 C -0.05 -1.43 9.55 22.33 0.21 -1.21 16 25 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.04 0.63 8.10 -2.39 -0.02 0.61 16 27 H 0.04 0.64 8.10 -2.39 -0.02 0.62 16 28 H 0.13 0.48 8.08 -2.39 -0.02 0.47 16 29 H 0.13 0.39 8.09 -2.39 -0.02 0.38 16 30 H 0.18 0.42 7.03 -2.91 -0.02 0.40 16 31 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 32 H 0.43 5.94 8.83 -92.71 -0.82 5.12 16 33 H 0.41 10.82 8.49 -92.71 -0.79 10.03 16 34 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.27 14.44 8.31 -92.71 -0.77 13.66 16 39 H 0.11 3.81 6.41 -2.91 -0.02 3.79 16 40 H 0.12 3.27 7.64 -2.91 -0.02 3.25 16 Total: -1.00 -75.96 345.06 2.10 -73.86 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -0.54 Total: 14.62 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 4.78 Total: 1.75 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -4.06 Total: -95.78 kcal Atomic # 8 Polarization: -39.53 SS G_CDS: -0.11 Total: -39.64 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -75.96 2.10 -73.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000626733934.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.680 kcal (2) G-P(sol) polarization free energy of solvation -75.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds