Wall clock time and date at job start Tue Mar 31 2020 06:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21252 * 120.00457 * 2 1 4 4 C 1.47184 * 119.99853 * 179.97438 * 2 1 3 5 5 C 1.39883 * 120.13864 * 359.97438 * 4 2 1 6 6 C 1.37912 * 119.96523 * 180.02562 * 5 4 2 7 7 C 1.38300 * 120.25249 * 359.74152 * 6 5 4 8 8 C 1.38981 * 120.27604 * 0.51449 * 7 6 5 9 9 N 1.39965 * 119.98252 * 179.76429 * 8 7 6 10 10 C 1.34781 * 119.99731 * 214.83022 * 9 8 7 11 11 O 1.21279 * 120.00197 * 355.38746 * 10 9 8 12 12 C 1.50702 * 119.99663 * 175.38783 * 10 9 8 13 13 N 1.46896 * 109.47030 * 180.02562 * 12 10 9 14 14 C 1.46900 * 111.00340 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.46637 * 324.99350 * 14 13 12 16 16 C 1.52998 * 109.47606 * 84.99489 * 14 13 12 17 17 C 1.50702 * 109.47208 * 205.00060 * 14 13 12 18 18 H 1.07997 * 119.99821 * 359.97438 * 17 14 13 19 19 C 1.37873 * 119.99760 * 179.97438 * 17 14 13 20 20 N 1.31515 * 119.99852 * 179.97438 * 19 17 14 21 21 Si 1.86803 * 120.00329 * 359.97438 * 19 17 14 22 22 H 1.48500 * 109.47067 * 89.99809 * 21 19 17 23 23 H 1.48503 * 109.47263 * 210.00176 * 21 19 17 24 24 H 1.48494 * 109.47059 * 330.00082 * 21 19 17 25 25 C 1.38567 * 120.03544 * 359.48841 * 8 7 6 26 26 H 1.09002 * 109.47340 * 270.00649 * 1 2 3 27 27 H 1.09009 * 109.46916 * 29.99912 * 1 2 3 28 28 H 1.08994 * 109.47630 * 149.99995 * 1 2 3 29 29 H 1.08002 * 120.01596 * 359.97438 * 5 4 2 30 30 H 1.08005 * 119.87058 * 180.02562 * 6 5 4 31 31 H 1.08006 * 119.85672 * 180.25437 * 7 6 5 32 32 H 0.97001 * 120.00355 * 34.82770 * 9 8 7 33 33 H 1.09003 * 109.47256 * 59.99876 * 12 10 9 34 34 H 1.09003 * 109.47243 * 299.99971 * 12 10 9 35 35 H 1.00903 * 110.99884 * 303.94807 * 13 12 10 36 36 H 1.09000 * 109.46739 * 60.00218 * 16 14 13 37 37 H 1.08998 * 109.47265 * 180.02562 * 16 14 13 38 38 H 1.08998 * 109.46904 * 300.00490 * 16 14 13 39 39 H 0.97001 * 120.00175 * 180.02562 * 20 19 17 40 40 H 1.07991 * 120.13219 * 180.23165 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2428 -1.2747 0.0006 5 6 1.5463 -2.4878 0.0017 6 6 2.2394 -3.6800 0.0027 7 6 3.6224 -3.6820 -0.0027 8 6 4.3248 -2.4828 0.0016 9 7 5.7245 -2.4919 0.0011 10 6 6.4048 -1.5407 0.6711 11 8 5.8075 -0.6298 1.2043 12 6 7.9078 -1.6091 0.7577 13 7 8.4059 -0.4668 1.5354 14 6 9.8708 -0.5001 1.6405 15 1 10.2068 -1.5349 1.7068 16 6 10.4860 0.1577 0.4037 17 6 10.3030 0.2485 2.8750 18 1 9.5634 0.7037 3.5170 19 6 11.6424 0.3520 3.1848 20 7 12.0197 1.0056 4.2618 21 14 12.9215 -0.4361 2.0746 22 1 13.3415 0.5372 1.0347 23 1 14.1008 -0.8355 2.8840 24 1 12.3391 -1.6364 1.4228 25 6 3.6403 -1.2780 0.0005 26 1 -0.3634 0.0001 1.0277 27 1 -0.3633 0.8901 -0.5139 28 1 -0.3634 -0.8899 -0.5138 29 1 0.4663 -2.4906 0.0025 30 1 1.7001 -4.6158 0.0031 31 1 4.1588 -4.6195 -0.0060 32 1 6.2048 -3.1829 -0.4814 33 1 8.3314 -1.5781 -0.2462 34 1 8.2017 -2.5375 1.2475 35 1 8.0921 0.4058 1.1376 36 1 10.1500 1.1925 0.3374 37 1 11.5729 0.1326 0.4815 38 1 10.1734 -0.3837 -0.4892 39 1 12.9621 1.0788 4.4796 40 1 4.1845 -0.3452 0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000639724945.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:05 Heat of formation + Delta-G solvation = -29.678161 kcal Electronic energy + Delta-G solvation = -22089.619916 eV Core-core repulsion = 18677.062581 eV Total energy + Delta-G solvation = -3412.557335 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.74249 -39.56270 -38.13004 -36.11372 -34.83682 -32.49843 -31.86638 -30.88314 -30.01299 -28.99415 -25.80621 -24.96456 -24.07746 -22.76624 -20.51112 -20.28522 -20.07124 -17.87785 -17.18274 -16.67228 -16.37448 -15.86627 -15.54864 -15.28387 -15.16566 -14.85628 -14.56168 -14.12933 -13.78573 -13.68868 -13.32519 -12.93078 -12.73324 -12.66438 -12.37544 -12.33281 -12.15080 -11.96245 -11.74138 -11.57373 -11.07048 -10.60608 -10.53979 -10.15935 -9.94503 -9.73415 -9.52421 -9.21672 -9.14201 -8.57782 -8.38250 -7.52149 -6.03864 -4.01889 0.42780 1.10403 2.16583 2.68428 2.90098 3.24138 3.31433 3.36740 3.59044 3.82579 4.38935 4.54190 4.68164 4.77008 4.79934 4.87080 5.02849 5.05953 5.12635 5.23459 5.24909 5.34507 5.53875 5.59608 5.62965 5.67899 6.01421 6.07114 6.11831 6.12543 6.22372 6.25214 6.43597 6.62750 6.75574 7.04981 7.24695 7.35945 7.64678 7.82795 8.14161 8.26343 8.67816 9.09946 9.57329 11.09769 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027695 B = 0.003016 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.756115 B = 9282.112350 C = 9876.902767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.391 3.609 3 O -0.449 6.449 4 C -0.155 4.155 5 C -0.096 4.096 6 C -0.114 4.114 7 C -0.119 4.119 8 C 0.143 3.857 9 N -0.683 5.683 10 C 0.510 3.490 11 O -0.495 6.495 12 C 0.043 3.957 13 N -0.656 5.656 14 C 0.185 3.815 15 H 0.035 0.965 16 C -0.185 4.185 17 C -0.499 4.499 18 H 0.084 0.916 19 C 0.067 3.933 20 N -0.899 5.899 21 Si 0.887 3.113 22 H -0.280 1.280 23 H -0.296 1.296 24 H -0.270 1.270 25 C -0.066 4.066 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.411 0.589 33 H 0.053 0.947 34 H 0.101 0.899 35 H 0.343 0.657 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.026 0.974 39 H 0.264 0.736 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.310 -12.572 -13.743 28.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.268 3.732 3 O -0.323 6.323 4 C -0.157 4.157 5 C -0.115 4.115 6 C -0.133 4.133 7 C -0.140 4.140 8 C 0.048 3.952 9 N -0.330 5.330 10 C 0.298 3.702 11 O -0.366 6.366 12 C -0.090 4.090 13 N -0.288 5.288 14 C 0.076 3.924 15 H 0.053 0.947 16 C -0.244 4.244 17 C -0.538 4.538 18 H 0.102 0.898 19 C -0.134 4.134 20 N -0.538 5.538 21 Si 0.718 3.282 22 H -0.207 1.207 23 H -0.224 1.224 24 H -0.195 1.195 25 C -0.086 4.086 26 H 0.116 0.884 27 H 0.106 0.894 28 H 0.104 0.896 29 H 0.150 0.850 30 H 0.149 0.851 31 H 0.148 0.852 32 H 0.247 0.753 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.161 0.839 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.045 0.955 39 H 0.074 0.926 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -21.270 -11.555 -12.579 27.280 hybrid contribution 1.382 -0.705 -1.685 2.291 sum -19.888 -12.260 -14.265 27.374 Atomic orbital electron populations 1.22225 0.93693 1.04785 1.04828 1.22512 0.91625 0.87656 0.71407 1.90591 1.72057 1.34233 1.35446 1.20448 0.94005 0.95004 1.06238 1.21400 1.00048 0.91409 0.98644 1.20891 0.93406 0.98213 1.00792 1.21182 0.94726 0.96712 1.01335 1.17715 0.83312 0.93647 1.00495 1.43691 1.04091 1.32246 1.53019 1.21290 0.90955 0.81115 0.76833 1.90737 1.69933 1.32641 1.43323 1.21852 0.89035 0.99706 0.98437 1.60405 1.12682 1.03190 1.52484 1.19690 0.82161 0.96764 0.93770 0.94681 1.22894 1.01226 1.01482 0.98799 1.20967 0.92854 1.33300 1.06654 0.89811 1.24945 0.98207 0.95069 0.95191 1.69885 1.16330 1.42052 1.25522 0.86887 0.81314 0.79980 0.80063 1.20744 1.22385 1.19532 1.21664 0.93144 0.98871 0.94909 0.88408 0.89422 0.89553 0.84979 0.85059 0.85190 0.75305 0.92966 0.88106 0.83851 0.92451 0.93410 0.95545 0.92636 0.83026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.31 9.75 36.00 0.35 -0.96 16 2 C 0.39 4.54 7.23 -30.68 -0.22 4.31 16 3 O -0.45 -7.23 17.09 5.58 0.10 -7.14 16 4 C -0.16 -1.78 5.87 -105.09 -0.62 -2.39 16 5 C -0.10 -0.77 9.36 -39.09 -0.37 -1.13 16 6 C -0.11 -0.85 10.02 -39.68 -0.40 -1.24 16 7 C -0.12 -1.03 9.96 -39.28 -0.39 -1.42 16 8 C 0.14 1.69 6.29 -83.75 -0.53 1.16 16 9 N -0.68 -7.71 5.34 -9.90 -0.05 -7.76 16 10 C 0.51 7.88 7.71 -10.98 -0.08 7.80 16 11 O -0.49 -9.79 13.64 5.56 0.08 -9.71 16 12 C 0.04 0.67 5.97 -4.98 -0.03 0.64 16 13 N -0.66 -13.73 5.86 -109.22 -0.64 -14.37 16 14 C 0.18 4.30 2.16 -68.86 -0.15 4.15 16 15 H 0.04 0.82 6.85 -51.93 -0.36 0.46 16 16 C -0.19 -3.90 8.64 37.16 0.32 -3.58 16 17 C -0.50 -14.29 9.42 -34.44 -0.32 -14.62 16 18 H 0.08 2.68 8.06 -52.49 -0.42 2.26 16 19 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 20 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 21 Si 0.89 21.68 24.37 -169.99 -4.14 17.54 16 22 H -0.28 -6.69 6.87 56.52 0.39 -6.30 16 23 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.27 -6.19 6.53 56.52 0.37 -5.82 16 25 C -0.07 -0.92 8.24 -38.90 -0.32 -1.24 16 26 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.09 0.56 8.14 -51.92 -0.42 0.13 16 28 H 0.09 0.34 6.47 -51.93 -0.34 0.01 16 29 H 0.13 0.62 6.35 -52.49 -0.33 0.29 16 30 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 31 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 32 H 0.41 3.05 8.82 -40.82 -0.36 2.69 16 33 H 0.05 0.70 7.44 -51.93 -0.39 0.31 16 34 H 0.10 1.44 8.06 -51.93 -0.42 1.03 16 35 H 0.34 7.19 8.17 -39.29 -0.32 6.87 16 36 H 0.06 1.20 8.13 -51.93 -0.42 0.78 16 37 H 0.05 1.06 3.28 -51.93 -0.17 0.89 16 38 H 0.03 0.46 7.45 -51.93 -0.39 0.07 16 39 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.15 2.61 5.81 -52.49 -0.30 2.30 16 LS Contribution 332.42 15.07 5.01 5.01 Total: -1.00 -36.37 332.42 -6.82 -43.19 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.09 Total: 7.02 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -2.85 Total: -6.67 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.08 Total: -49.23 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.17 Total: -16.85 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.14 Total: 17.54 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.37 -6.82 -43.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000639724945.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.512 kcal (2) G-P(sol) polarization free energy of solvation -36.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds