Wall clock time and date at job start Tue Mar 31 2020 06:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21252 * 120.00457 * 2 1 4 4 C 1.47184 * 119.99853 * 179.97438 * 2 1 3 5 5 C 1.39883 * 120.13864 * 359.97438 * 4 2 1 6 6 C 1.37912 * 119.96523 * 180.02562 * 5 4 2 7 7 C 1.38300 * 120.25249 * 359.74152 * 6 5 4 8 8 C 1.38981 * 120.27604 * 0.51449 * 7 6 5 9 9 N 1.39965 * 119.98252 * 179.76429 * 8 7 6 10 10 C 1.34781 * 119.99731 * 214.83022 * 9 8 7 11 11 O 1.21279 * 120.00197 * 355.38746 * 10 9 8 12 12 C 1.50702 * 119.99663 * 175.38783 * 10 9 8 13 13 N 1.46896 * 109.47030 * 180.02562 * 12 10 9 14 14 C 1.46900 * 111.00340 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.46637 * 324.99350 * 14 13 12 16 16 C 1.52998 * 109.47606 * 84.99489 * 14 13 12 17 17 C 1.50702 * 109.47208 * 205.00060 * 14 13 12 18 18 H 1.07997 * 119.99821 * 359.97438 * 17 14 13 19 19 C 1.37873 * 119.99760 * 179.97438 * 17 14 13 20 20 N 1.31515 * 119.99852 * 179.97438 * 19 17 14 21 21 Si 1.86803 * 120.00329 * 359.97438 * 19 17 14 22 22 H 1.48500 * 109.47067 * 89.99809 * 21 19 17 23 23 H 1.48503 * 109.47263 * 210.00176 * 21 19 17 24 24 H 1.48494 * 109.47059 * 330.00082 * 21 19 17 25 25 C 1.38567 * 120.03544 * 359.48841 * 8 7 6 26 26 H 1.09002 * 109.47340 * 270.00649 * 1 2 3 27 27 H 1.09009 * 109.46916 * 29.99912 * 1 2 3 28 28 H 1.08994 * 109.47630 * 149.99995 * 1 2 3 29 29 H 1.08002 * 120.01596 * 359.97438 * 5 4 2 30 30 H 1.08005 * 119.87058 * 180.02562 * 6 5 4 31 31 H 1.08006 * 119.85672 * 180.25437 * 7 6 5 32 32 H 0.97001 * 120.00355 * 34.82770 * 9 8 7 33 33 H 1.09003 * 109.47256 * 59.99876 * 12 10 9 34 34 H 1.09003 * 109.47243 * 299.99971 * 12 10 9 35 35 H 1.00903 * 110.99884 * 303.94807 * 13 12 10 36 36 H 1.09000 * 109.46739 * 60.00218 * 16 14 13 37 37 H 1.08998 * 109.47265 * 180.02562 * 16 14 13 38 38 H 1.08998 * 109.46904 * 300.00490 * 16 14 13 39 39 H 0.97001 * 120.00175 * 180.02562 * 20 19 17 40 40 H 1.07991 * 120.13219 * 180.23165 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2428 -1.2747 0.0006 5 6 1.5463 -2.4878 0.0017 6 6 2.2394 -3.6800 0.0027 7 6 3.6224 -3.6820 -0.0027 8 6 4.3248 -2.4828 0.0016 9 7 5.7245 -2.4919 0.0011 10 6 6.4048 -1.5407 0.6711 11 8 5.8075 -0.6298 1.2043 12 6 7.9078 -1.6091 0.7577 13 7 8.4059 -0.4668 1.5354 14 6 9.8708 -0.5001 1.6405 15 1 10.2068 -1.5349 1.7068 16 6 10.4860 0.1577 0.4037 17 6 10.3030 0.2485 2.8750 18 1 9.5634 0.7037 3.5170 19 6 11.6424 0.3520 3.1848 20 7 12.0197 1.0056 4.2618 21 14 12.9215 -0.4361 2.0746 22 1 13.3415 0.5372 1.0347 23 1 14.1008 -0.8355 2.8840 24 1 12.3391 -1.6364 1.4228 25 6 3.6403 -1.2780 0.0005 26 1 -0.3634 0.0001 1.0277 27 1 -0.3633 0.8901 -0.5139 28 1 -0.3634 -0.8899 -0.5138 29 1 0.4663 -2.4906 0.0025 30 1 1.7001 -4.6158 0.0031 31 1 4.1588 -4.6195 -0.0060 32 1 6.2048 -3.1829 -0.4814 33 1 8.3314 -1.5781 -0.2462 34 1 8.2017 -2.5375 1.2475 35 1 8.0921 0.4058 1.1376 36 1 10.1500 1.1925 0.3374 37 1 11.5729 0.1326 0.4815 38 1 10.1734 -0.3837 -0.4892 39 1 12.9621 1.0788 4.4796 40 1 4.1845 -0.3452 0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000639724945.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:04 Heat of formation + Delta-G solvation = -59.227633 kcal Electronic energy + Delta-G solvation = -22090.901277 eV Core-core repulsion = 18677.062581 eV Total energy + Delta-G solvation = -3413.838696 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.71368 -40.58429 -39.10136 -37.75098 -35.88182 -34.53186 -32.69112 -32.09122 -31.19600 -29.85828 -27.29278 -26.85800 -24.85271 -23.67930 -22.12549 -21.52468 -20.97391 -19.11324 -18.54563 -18.06838 -17.38334 -16.87039 -16.79154 -16.47846 -16.22468 -16.05121 -15.86185 -15.37379 -15.06186 -14.82174 -14.59131 -14.44063 -14.09453 -13.76649 -13.56919 -13.26550 -13.14368 -13.04994 -12.83721 -12.77511 -12.54299 -12.47935 -12.00300 -11.52570 -11.47366 -11.28918 -10.84926 -10.80817 -10.75505 -9.97896 -9.25388 -9.09350 -8.27088 -6.31778 -0.36326 0.30169 1.31452 1.32547 1.36813 1.48329 1.58784 1.92732 2.33066 2.82612 3.06450 3.07121 3.47042 3.71391 3.92221 4.05244 4.13170 4.26523 4.32148 4.33399 4.42029 4.48269 4.52657 4.55486 4.65150 4.65650 4.70511 4.92066 4.92864 5.10442 5.28259 5.33793 5.36501 5.37344 5.47110 5.63264 5.92207 5.96345 6.33870 6.53251 6.57103 6.66299 6.76055 7.12328 7.33074 8.91226 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027695 B = 0.003016 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.756115 B = 9282.112350 C = 9876.902767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.384 3.616 3 O -0.515 6.515 4 C -0.181 4.181 5 C -0.076 4.076 6 C -0.107 4.107 7 C -0.105 4.105 8 C 0.116 3.884 9 N -0.661 5.661 10 C 0.510 3.490 11 O -0.552 6.552 12 C 0.045 3.955 13 N -0.683 5.683 14 C 0.191 3.809 15 H 0.047 0.953 16 C -0.180 4.180 17 C -0.513 4.513 18 H 0.024 0.976 19 C 0.003 3.997 20 N -0.956 5.956 21 Si 0.962 3.038 22 H -0.268 1.268 23 H -0.299 1.299 24 H -0.236 1.236 25 C -0.103 4.103 26 H 0.115 0.885 27 H 0.088 0.912 28 H 0.123 0.877 29 H 0.175 0.825 30 H 0.177 0.823 31 H 0.164 0.836 32 H 0.431 0.569 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.336 0.664 36 H 0.047 0.953 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.266 0.734 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.877 -17.222 -16.555 33.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.266 3.734 3 O -0.395 6.395 4 C -0.183 4.183 5 C -0.094 4.094 6 C -0.125 4.125 7 C -0.125 4.125 8 C 0.021 3.979 9 N -0.310 5.310 10 C 0.298 3.702 11 O -0.427 6.427 12 C -0.087 4.087 13 N -0.315 5.315 14 C 0.082 3.918 15 H 0.065 0.935 16 C -0.239 4.239 17 C -0.552 4.552 18 H 0.042 0.958 19 C -0.193 4.193 20 N -0.596 5.596 21 Si 0.788 3.212 22 H -0.194 1.194 23 H -0.227 1.227 24 H -0.159 1.159 25 C -0.124 4.124 26 H 0.133 0.867 27 H 0.107 0.893 28 H 0.141 0.859 29 H 0.192 0.808 30 H 0.194 0.806 31 H 0.181 0.819 32 H 0.271 0.729 33 H 0.106 0.894 34 H 0.137 0.863 35 H 0.154 0.846 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -22.887 -16.289 -15.445 32.058 hybrid contribution 1.665 0.688 -0.759 1.955 sum -21.221 -15.601 -16.203 30.924 Atomic orbital electron populations 1.22267 0.89284 1.06661 1.06348 1.23452 0.94083 0.86912 0.68941 1.90569 1.73740 1.36271 1.38912 1.20668 0.93233 0.96646 1.07717 1.21887 1.02076 0.89924 0.95563 1.21489 0.92962 0.99661 0.98382 1.21608 0.95651 0.96358 0.98893 1.17929 0.83244 0.94217 1.02460 1.43354 1.04302 1.31427 1.51881 1.21310 0.91057 0.81129 0.76655 1.90743 1.70854 1.35046 1.46102 1.21937 0.89054 0.97996 0.99724 1.60164 1.11526 1.04722 1.55064 1.19455 0.83742 0.96303 0.92265 0.93528 1.22756 1.00433 1.01422 0.99268 1.21301 0.92106 1.33464 1.08289 0.95787 1.25964 1.00866 0.95618 0.96860 1.70081 1.17019 1.44335 1.28207 0.85674 0.77462 0.80213 0.77877 1.19383 1.22714 1.15906 1.21496 0.94721 0.98077 0.98110 0.86689 0.89345 0.85879 0.80755 0.80568 0.81853 0.72883 0.89414 0.86254 0.84574 0.93420 0.94007 0.91108 0.92539 0.87958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.12 9.75 71.23 0.69 -1.42 16 2 C 0.38 9.28 7.23 28.04 0.20 9.48 16 3 O -0.52 -18.50 17.09 -2.94 -0.05 -18.55 16 4 C -0.18 -4.13 5.87 -20.16 -0.12 -4.24 16 5 C -0.08 -0.92 9.36 22.59 0.21 -0.71 16 6 C -0.11 -1.02 10.02 22.21 0.22 -0.80 16 7 C -0.11 -1.42 9.96 22.46 0.22 -1.20 16 8 C 0.12 2.64 6.29 38.10 0.24 2.88 16 9 N -0.66 -14.26 5.34 -303.62 -1.62 -15.88 16 10 C 0.51 16.03 7.71 87.66 0.68 16.70 16 11 O -0.55 -23.60 13.64 -3.03 -0.04 -23.64 16 12 C 0.04 1.34 5.97 85.56 0.51 1.85 16 13 N -0.68 -29.14 5.86 -499.45 -2.93 -32.06 16 14 C 0.19 8.81 2.16 44.17 0.10 8.90 16 15 H 0.05 2.05 6.85 -2.39 -0.02 2.03 16 16 C -0.18 -7.18 8.64 71.98 0.62 -6.56 16 17 C -0.51 -30.63 9.42 25.60 0.24 -30.39 16 18 H 0.02 1.66 8.06 -2.91 -0.02 1.63 16 19 C 0.00 0.19 5.45 84.65 0.46 0.65 16 20 N -0.96 -61.92 13.96 21.45 0.30 -61.62 16 21 Si 0.96 44.32 24.37 68.60 1.67 45.99 16 22 H -0.27 -11.74 6.87 99.48 0.68 -11.06 16 23 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 24 H -0.24 -9.50 6.53 99.48 0.65 -8.85 16 25 C -0.10 -3.08 8.24 22.71 0.19 -2.89 16 26 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.12 0.43 6.47 -2.39 -0.02 0.41 16 29 H 0.18 0.57 6.35 -2.91 -0.02 0.55 16 30 H 0.18 0.23 8.06 -2.91 -0.02 0.21 16 31 H 0.16 1.10 8.06 -2.91 -0.02 1.07 16 32 H 0.43 5.22 8.82 -92.71 -0.82 4.41 16 33 H 0.09 2.03 7.44 -2.39 -0.02 2.01 16 34 H 0.12 3.11 8.06 -2.39 -0.02 3.09 16 35 H 0.34 14.84 8.17 -89.69 -0.73 14.11 16 36 H 0.05 1.96 8.13 -2.39 -0.02 1.94 16 37 H 0.04 1.71 3.28 -2.39 -0.01 1.70 16 38 H 0.07 2.19 7.45 -2.39 -0.02 2.17 16 39 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 40 H 0.10 4.04 5.81 -2.92 -0.02 4.02 16 Total: -1.00 -91.29 332.42 1.26 -90.03 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: -0.54 Total: 23.49 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 4.47 Total: -7.75 kcal Atomic # 7 Polarization: -105.32 SS G_CDS: -4.25 Total: -109.57 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -0.09 Total: -42.19 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.67 Total: 45.99 kcal Total: -91.29 1.26 -90.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000639724945.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.801 kcal (2) G-P(sol) polarization free energy of solvation -91.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds