Wall clock time and date at job start Tue Mar 31 2020 06:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21255 * 120.00023 * 2 1 4 4 C 1.47181 * 120.00300 * 180.02562 * 2 1 3 5 5 C 1.39898 * 120.13817 * 359.97353 * 4 2 1 6 6 C 1.37905 * 119.96999 * 180.02562 * 5 4 2 7 7 C 1.38299 * 120.24840 * 359.74645 * 6 5 4 8 8 C 1.38989 * 120.28301 * 0.51036 * 7 6 5 9 9 N 1.39958 * 119.99009 * 179.76079 * 8 7 6 10 10 C 1.34771 * 120.00504 * 214.83273 * 9 8 7 11 11 O 1.21288 * 119.99944 * 355.38546 * 10 9 8 12 12 C 1.50695 * 120.00025 * 175.38945 * 10 9 8 13 13 N 1.46906 * 109.46807 * 179.97438 * 12 10 9 14 14 C 1.46904 * 110.99669 * 179.97438 * 13 12 10 15 15 H 1.08996 * 109.47376 * 35.00448 * 14 13 12 16 16 C 1.53000 * 109.47245 * 275.00131 * 14 13 12 17 17 C 1.50705 * 109.46898 * 155.00287 * 14 13 12 18 18 H 1.08000 * 119.99616 * 359.97438 * 17 14 13 19 19 C 1.37874 * 119.99919 * 180.02562 * 17 14 13 20 20 N 1.31514 * 119.99985 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 119.99963 * 180.02562 * 19 17 14 22 22 H 1.48495 * 109.47181 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.46864 * 299.99493 * 21 19 17 24 24 H 1.48497 * 109.47514 * 59.99137 * 21 19 17 25 25 C 1.38566 * 120.02411 * 359.49152 * 8 7 6 26 26 H 1.08998 * 109.47235 * 239.99834 * 1 2 3 27 27 H 1.08994 * 109.47152 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.46773 * 120.00048 * 1 2 3 29 29 H 1.08001 * 120.01485 * 0.02562 * 5 4 2 30 30 H 1.07997 * 119.87412 * 180.02562 * 6 5 4 31 31 H 1.08003 * 119.85728 * 180.25870 * 7 6 5 32 32 H 0.97006 * 119.99562 * 34.83208 * 9 8 7 33 33 H 1.08996 * 109.47567 * 60.00039 * 12 10 9 34 34 H 1.08993 * 109.47198 * 299.99518 * 12 10 9 35 35 H 1.00891 * 111.00177 * 303.95405 * 13 12 10 36 36 H 1.08992 * 109.47418 * 60.00006 * 16 14 13 37 37 H 1.09006 * 109.46965 * 180.02562 * 16 14 13 38 38 H 1.09006 * 109.47298 * 299.99691 * 16 14 13 39 39 H 0.97007 * 119.99621 * 180.02562 * 20 19 17 40 40 H 1.07997 * 120.12584 * 180.22578 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2430 -1.2746 -0.0006 5 6 1.5464 -2.4879 -0.0006 6 6 2.2395 -3.6801 -0.0006 7 6 3.6225 -3.6820 -0.0059 8 6 4.3250 -2.4827 -0.0005 9 7 5.7246 -2.4918 -0.0009 10 6 6.4049 -1.5412 0.6699 11 8 5.8075 -0.6307 1.2039 12 6 7.9078 -1.6097 0.7565 13 7 8.4059 -0.4672 1.5343 14 6 9.8707 -0.5013 1.6404 15 1 10.2927 -0.9005 0.7181 16 6 10.2764 -1.3938 2.8150 17 6 10.3905 0.8949 1.8674 18 1 9.7016 1.7246 1.9266 19 6 11.7455 1.1132 1.9987 20 7 12.5844 0.1030 1.9262 21 14 12.3897 2.8438 2.2808 22 1 13.8704 2.8094 2.3880 23 1 11.9954 3.7106 1.1414 24 1 11.8154 3.3870 3.5379 25 6 3.6403 -1.2780 -0.0005 26 1 -0.3633 -0.5138 0.8899 27 1 -0.3633 1.0276 0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 0.4664 -2.4908 -0.0005 30 1 1.7003 -4.6158 -0.0010 31 1 4.1589 -4.6194 -0.0101 32 1 6.2050 -3.1823 -0.4840 33 1 8.3315 -1.5778 -0.2472 34 1 8.2016 -2.5383 1.2456 35 1 8.0921 0.4053 1.1366 36 1 9.9005 -2.4036 2.6508 37 1 11.3633 -1.4187 2.8940 38 1 9.8545 -0.9945 3.7374 39 1 13.5377 0.2566 2.0189 40 1 4.1846 -0.3452 -0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000639724946.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:07 Heat of formation + Delta-G solvation = -41.606095 kcal Electronic energy + Delta-G solvation = -22030.399349 eV Core-core repulsion = 18617.324780 eV Total energy + Delta-G solvation = -3413.074569 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.68049 -39.50408 -38.06817 -35.71990 -34.75530 -32.56326 -31.81824 -30.72623 -29.56215 -28.65878 -25.77374 -24.88156 -24.03846 -22.69899 -20.47025 -20.05861 -19.76009 -17.81330 -17.19207 -16.50275 -16.15448 -15.79539 -15.49547 -15.20145 -15.14915 -14.73896 -14.31006 -14.10329 -13.74670 -13.54578 -13.17867 -12.88236 -12.64105 -12.51831 -12.36182 -12.16001 -11.87131 -11.72188 -11.28660 -10.91724 -10.77892 -10.49213 -10.40713 -10.16829 -10.07642 -9.92452 -9.55757 -9.15360 -8.87723 -8.48997 -8.32828 -7.36090 -6.04876 -4.10925 0.46177 1.14442 2.19554 2.77036 2.98226 3.33043 3.36468 3.41079 3.62775 3.85583 4.40531 4.57962 4.72625 4.82730 4.90371 4.94594 5.07165 5.10986 5.23984 5.27754 5.33058 5.36487 5.64624 5.71601 5.75990 5.79838 6.04949 6.11978 6.16677 6.29697 6.79082 6.80517 7.06800 7.13923 7.30350 7.38260 7.44537 7.76851 7.83794 8.22468 8.25761 8.31489 8.60297 8.98382 9.55217 11.01623 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023997 B = 0.003032 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.547423 B = 9231.706986 C =10231.468079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.390 3.610 3 O -0.448 6.448 4 C -0.156 4.156 5 C -0.096 4.096 6 C -0.115 4.115 7 C -0.120 4.120 8 C 0.144 3.856 9 N -0.684 5.684 10 C 0.510 3.490 11 O -0.498 6.498 12 C 0.046 3.954 13 N -0.673 5.673 14 C 0.213 3.787 15 H 0.003 0.997 16 C -0.126 4.126 17 C -0.520 4.520 18 H 0.062 0.938 19 C 0.063 3.937 20 N -0.892 5.892 21 Si 0.899 3.101 22 H -0.287 1.287 23 H -0.277 1.277 24 H -0.275 1.275 25 C -0.066 4.066 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.411 0.589 33 H 0.053 0.947 34 H 0.098 0.902 35 H 0.342 0.658 36 H 0.003 0.997 37 H 0.082 0.918 38 H 0.033 0.967 39 H 0.262 0.738 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.808 -11.103 -7.178 25.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.267 3.733 3 O -0.323 6.323 4 C -0.157 4.157 5 C -0.115 4.115 6 C -0.133 4.133 7 C -0.140 4.140 8 C 0.049 3.951 9 N -0.331 5.331 10 C 0.299 3.701 11 O -0.370 6.370 12 C -0.087 4.087 13 N -0.306 5.306 14 C 0.106 3.894 15 H 0.021 0.979 16 C -0.184 4.184 17 C -0.558 4.558 18 H 0.080 0.920 19 C -0.139 4.139 20 N -0.530 5.530 21 Si 0.727 3.273 22 H -0.213 1.213 23 H -0.203 1.203 24 H -0.201 1.201 25 C -0.086 4.086 26 H 0.111 0.889 27 H 0.103 0.897 28 H 0.111 0.889 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.148 0.852 32 H 0.247 0.753 33 H 0.071 0.929 34 H 0.115 0.885 35 H 0.161 0.839 36 H 0.022 0.978 37 H 0.101 0.899 38 H 0.053 0.947 39 H 0.072 0.928 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -21.704 -10.182 -6.125 24.743 hybrid contribution 0.915 0.477 -0.918 1.381 sum -20.789 -9.705 -7.043 23.999 Atomic orbital electron populations 1.22230 0.93674 1.05127 1.04405 1.22523 0.91623 0.87661 0.71465 1.90593 1.72123 1.34212 1.35330 1.20436 0.94010 0.94962 1.06331 1.21351 0.99972 0.91404 0.98796 1.20879 0.93408 0.98183 1.00846 1.21184 0.94712 0.96725 1.01418 1.17732 0.83425 0.93616 1.00300 1.43732 1.04019 1.32357 1.52976 1.21421 0.91133 0.80935 0.76651 1.90717 1.70022 1.32668 1.43605 1.21811 0.88474 0.99905 0.98473 1.60525 1.14541 1.03061 1.52507 1.19157 0.79916 0.96186 0.94114 0.97947 1.21746 1.03140 0.94779 0.98779 1.21221 0.92044 0.92570 1.49987 0.92028 1.24903 0.96779 0.97272 0.94961 1.69882 1.02762 1.30236 1.50148 0.86541 0.77468 0.84368 0.78950 1.21293 1.20252 1.20095 1.21675 0.93128 0.98923 0.94900 0.88850 0.89719 0.88897 0.85119 0.85099 0.85202 0.75267 0.92893 0.88450 0.83910 0.97778 0.89892 0.94736 0.92828 0.83015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.34 8.93 36.00 0.32 -1.02 16 2 C 0.39 4.64 7.23 -30.68 -0.22 4.42 16 3 O -0.45 -7.37 17.08 5.58 0.10 -7.28 16 4 C -0.16 -1.83 5.87 -105.08 -0.62 -2.45 16 5 C -0.10 -0.79 9.47 -39.08 -0.37 -1.16 16 6 C -0.11 -0.88 10.02 -39.68 -0.40 -1.28 16 7 C -0.12 -1.09 9.96 -39.28 -0.39 -1.48 16 8 C 0.14 1.78 6.29 -83.75 -0.53 1.25 16 9 N -0.68 -8.28 5.34 -9.90 -0.05 -8.33 16 10 C 0.51 8.36 7.71 -10.99 -0.08 8.28 16 11 O -0.50 -10.19 13.64 5.55 0.08 -10.11 16 12 C 0.05 0.79 5.97 -4.98 -0.03 0.76 16 13 N -0.67 -14.95 5.93 -109.22 -0.65 -15.59 16 14 C 0.21 5.39 2.60 -68.86 -0.18 5.21 16 15 H 0.00 0.08 7.80 -51.93 -0.41 -0.33 16 16 C -0.13 -3.12 9.19 37.16 0.34 -2.78 16 17 C -0.52 -14.50 8.59 -34.44 -0.30 -14.79 16 18 H 0.06 1.72 7.62 -52.49 -0.40 1.32 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 20 N -0.89 -25.35 11.32 55.43 0.63 -24.73 16 21 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C -0.07 -0.95 8.24 -38.90 -0.32 -1.27 16 26 H 0.09 0.46 8.09 -51.93 -0.42 0.04 16 27 H 0.08 0.59 8.12 -51.93 -0.42 0.16 16 28 H 0.09 0.41 8.09 -51.93 -0.42 -0.01 16 29 H 0.13 0.64 7.04 -52.49 -0.37 0.27 16 30 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 31 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 32 H 0.41 3.44 8.82 -40.82 -0.36 3.08 16 33 H 0.05 0.83 8.06 -51.93 -0.42 0.41 16 34 H 0.10 1.55 7.44 -51.93 -0.39 1.16 16 35 H 0.34 7.84 7.93 -39.30 -0.31 7.53 16 36 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 37 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 38 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.15 2.70 5.81 -52.49 -0.30 2.40 16 LS Contribution 340.41 15.07 5.13 5.13 Total: -1.00 -34.35 340.41 -7.98 -42.33 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -5.32 Total: 6.68 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -2.87 Total: -4.66 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: -0.07 Total: -48.65 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: 0.17 Total: -17.39 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.35 -7.98 -42.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000639724946.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.721 kcal (2) G-P(sol) polarization free energy of solvation -34.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds