Wall clock time and date at job start Tue Mar 31 2020 06:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21255 * 120.00023 * 2 1 4 4 C 1.47181 * 120.00300 * 180.02562 * 2 1 3 5 5 C 1.39898 * 120.13817 * 359.97353 * 4 2 1 6 6 C 1.37905 * 119.96999 * 180.02562 * 5 4 2 7 7 C 1.38299 * 120.24840 * 359.74645 * 6 5 4 8 8 C 1.38989 * 120.28301 * 0.51036 * 7 6 5 9 9 N 1.39958 * 119.99009 * 179.76079 * 8 7 6 10 10 C 1.34771 * 120.00504 * 214.83273 * 9 8 7 11 11 O 1.21288 * 119.99944 * 355.38546 * 10 9 8 12 12 C 1.50695 * 120.00025 * 175.38945 * 10 9 8 13 13 N 1.46906 * 109.46807 * 179.97438 * 12 10 9 14 14 C 1.46904 * 110.99669 * 179.97438 * 13 12 10 15 15 H 1.08996 * 109.47376 * 35.00448 * 14 13 12 16 16 C 1.53000 * 109.47245 * 275.00131 * 14 13 12 17 17 C 1.50705 * 109.46898 * 155.00287 * 14 13 12 18 18 H 1.08000 * 119.99616 * 359.97438 * 17 14 13 19 19 C 1.37874 * 119.99919 * 180.02562 * 17 14 13 20 20 N 1.31514 * 119.99985 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 119.99963 * 180.02562 * 19 17 14 22 22 H 1.48495 * 109.47181 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.46864 * 299.99493 * 21 19 17 24 24 H 1.48497 * 109.47514 * 59.99137 * 21 19 17 25 25 C 1.38566 * 120.02411 * 359.49152 * 8 7 6 26 26 H 1.08998 * 109.47235 * 239.99834 * 1 2 3 27 27 H 1.08994 * 109.47152 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.46773 * 120.00048 * 1 2 3 29 29 H 1.08001 * 120.01485 * 0.02562 * 5 4 2 30 30 H 1.07997 * 119.87412 * 180.02562 * 6 5 4 31 31 H 1.08003 * 119.85728 * 180.25870 * 7 6 5 32 32 H 0.97006 * 119.99562 * 34.83208 * 9 8 7 33 33 H 1.08996 * 109.47567 * 60.00039 * 12 10 9 34 34 H 1.08993 * 109.47198 * 299.99518 * 12 10 9 35 35 H 1.00891 * 111.00177 * 303.95405 * 13 12 10 36 36 H 1.08992 * 109.47418 * 60.00006 * 16 14 13 37 37 H 1.09006 * 109.46965 * 180.02562 * 16 14 13 38 38 H 1.09006 * 109.47298 * 299.99691 * 16 14 13 39 39 H 0.97007 * 119.99621 * 180.02562 * 20 19 17 40 40 H 1.07997 * 120.12584 * 180.22578 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2430 -1.2746 -0.0006 5 6 1.5464 -2.4879 -0.0006 6 6 2.2395 -3.6801 -0.0006 7 6 3.6225 -3.6820 -0.0059 8 6 4.3250 -2.4827 -0.0005 9 7 5.7246 -2.4918 -0.0009 10 6 6.4049 -1.5412 0.6699 11 8 5.8075 -0.6307 1.2039 12 6 7.9078 -1.6097 0.7565 13 7 8.4059 -0.4672 1.5343 14 6 9.8707 -0.5013 1.6404 15 1 10.2927 -0.9005 0.7181 16 6 10.2764 -1.3938 2.8150 17 6 10.3905 0.8949 1.8674 18 1 9.7016 1.7246 1.9266 19 6 11.7455 1.1132 1.9987 20 7 12.5844 0.1030 1.9262 21 14 12.3897 2.8438 2.2808 22 1 13.8704 2.8094 2.3880 23 1 11.9954 3.7106 1.1414 24 1 11.8154 3.3870 3.5379 25 6 3.6403 -1.2780 -0.0005 26 1 -0.3633 -0.5138 0.8899 27 1 -0.3633 1.0276 0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 0.4664 -2.4908 -0.0005 30 1 1.7003 -4.6158 -0.0010 31 1 4.1589 -4.6194 -0.0101 32 1 6.2050 -3.1823 -0.4840 33 1 8.3315 -1.5778 -0.2472 34 1 8.2016 -2.5383 1.2456 35 1 8.0921 0.4053 1.1366 36 1 9.9005 -2.4036 2.6508 37 1 11.3633 -1.4187 2.8940 38 1 9.8545 -0.9945 3.7374 39 1 13.5377 0.2566 2.0189 40 1 4.1846 -0.3452 -0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000639724946.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:06 Heat of formation + Delta-G solvation = -66.926736 kcal Electronic energy + Delta-G solvation = -22031.497334 eV Core-core repulsion = 18617.324780 eV Total energy + Delta-G solvation = -3414.172554 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.71000 -40.57074 -39.07713 -37.50495 -35.87536 -34.53096 -32.65111 -31.75165 -30.87606 -29.78953 -27.57079 -26.69338 -24.84393 -23.68236 -21.87242 -21.43692 -20.96490 -19.07340 -18.47566 -17.88918 -17.30847 -16.99352 -16.63227 -16.42861 -16.28091 -16.04160 -15.71601 -15.33963 -15.09600 -14.67983 -14.58204 -14.34910 -13.81841 -13.47406 -13.26015 -13.15015 -13.01738 -12.85792 -12.81518 -12.73017 -12.53601 -12.34649 -12.22227 -12.03949 -11.51774 -11.00650 -10.83570 -10.80362 -10.59359 -9.97718 -9.25650 -9.12412 -8.17652 -6.30929 -0.35669 0.30239 1.32484 1.39886 1.41823 1.49610 1.58583 1.92291 2.39695 2.82855 3.07759 3.10945 3.59994 3.72016 3.92507 4.05591 4.14759 4.30662 4.35654 4.38487 4.40448 4.51974 4.66988 4.68717 4.80562 4.91476 5.04915 5.12860 5.15231 5.28781 5.33734 5.37209 5.41829 5.47975 5.61749 5.80504 5.95920 6.18520 6.31028 6.38415 6.54234 6.68385 6.88207 7.10589 7.38975 8.87733 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023997 B = 0.003032 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.547423 B = 9231.706986 C =10231.468079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.384 3.616 3 O -0.516 6.516 4 C -0.180 4.180 5 C -0.074 4.074 6 C -0.106 4.106 7 C -0.105 4.105 8 C 0.115 3.885 9 N -0.663 5.663 10 C 0.513 3.487 11 O -0.549 6.549 12 C 0.047 3.953 13 N -0.684 5.684 14 C 0.219 3.781 15 H -0.014 1.014 16 C -0.115 4.115 17 C -0.546 4.546 18 H 0.050 0.950 19 C 0.020 3.980 20 N -0.912 5.912 21 Si 0.960 3.040 22 H -0.277 1.277 23 H -0.273 1.273 24 H -0.276 1.276 25 C -0.104 4.104 26 H 0.122 0.878 27 H 0.079 0.921 28 H 0.126 0.874 29 H 0.176 0.824 30 H 0.178 0.822 31 H 0.163 0.837 32 H 0.430 0.570 33 H 0.071 0.929 34 H 0.116 0.884 35 H 0.333 0.667 36 H 0.032 0.968 37 H 0.062 0.938 38 H 0.021 0.979 39 H 0.265 0.735 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.285 -14.098 -7.696 29.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.266 3.734 3 O -0.395 6.395 4 C -0.182 4.182 5 C -0.092 4.092 6 C -0.124 4.124 7 C -0.125 4.125 8 C 0.021 3.979 9 N -0.311 5.311 10 C 0.302 3.698 11 O -0.424 6.424 12 C -0.085 4.085 13 N -0.316 5.316 14 C 0.111 3.889 15 H 0.003 0.997 16 C -0.174 4.174 17 C -0.585 4.585 18 H 0.068 0.932 19 C -0.180 4.180 20 N -0.551 5.551 21 Si 0.785 3.215 22 H -0.202 1.202 23 H -0.198 1.198 24 H -0.201 1.201 25 C -0.125 4.125 26 H 0.140 0.860 27 H 0.098 0.902 28 H 0.145 0.855 29 H 0.193 0.807 30 H 0.195 0.805 31 H 0.180 0.820 32 H 0.270 0.730 33 H 0.089 0.911 34 H 0.134 0.866 35 H 0.150 0.850 36 H 0.051 0.949 37 H 0.080 0.920 38 H 0.040 0.960 39 H 0.074 0.926 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -24.210 -13.256 -6.679 28.398 hybrid contribution 1.563 1.269 -0.810 2.170 sum -22.647 -11.987 -7.489 26.696 Atomic orbital electron populations 1.22273 0.89120 1.05888 1.07136 1.23476 0.94135 0.86850 0.68971 1.90573 1.73825 1.36264 1.38863 1.20660 0.93104 0.96696 1.07706 1.21857 1.02078 0.89827 0.95468 1.21484 0.92845 0.99726 0.98359 1.21603 0.95709 0.96264 0.98959 1.17948 0.83072 0.94332 1.02554 1.43372 1.04449 1.31447 1.51797 1.21207 0.90779 0.81130 0.76699 1.90720 1.70735 1.34805 1.46187 1.21868 0.89199 0.98473 0.98961 1.60399 1.12676 1.04269 1.54240 1.18964 0.81563 0.94981 0.93386 0.99679 1.21576 1.01645 0.96235 0.97905 1.21539 0.92538 0.93704 1.50684 0.93152 1.25633 0.96899 1.00945 0.94560 1.69977 1.03012 1.31834 1.50279 0.85593 0.77202 0.79998 0.78721 1.20230 1.19805 1.20098 1.21493 0.94805 0.97994 0.98171 0.86026 0.90223 0.85539 0.80689 0.80500 0.81959 0.73034 0.91125 0.86631 0.84953 0.94918 0.91953 0.95965 0.92573 0.88078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.09 8.93 71.24 0.64 -1.46 16 2 C 0.38 9.36 7.23 28.04 0.20 9.57 16 3 O -0.52 -18.75 17.08 -2.95 -0.05 -18.81 16 4 C -0.18 -4.18 5.87 -20.16 -0.12 -4.30 16 5 C -0.07 -0.91 9.47 22.59 0.21 -0.70 16 6 C -0.11 -1.06 10.02 22.21 0.22 -0.84 16 7 C -0.11 -1.53 9.96 22.46 0.22 -1.30 16 8 C 0.11 2.79 6.29 38.10 0.24 3.03 16 9 N -0.66 -15.89 5.34 -303.63 -1.62 -17.51 16 10 C 0.51 17.47 7.71 87.66 0.68 18.15 16 11 O -0.55 -24.20 13.64 -3.05 -0.04 -24.25 16 12 C 0.05 1.64 5.97 85.55 0.51 2.15 16 13 N -0.68 -31.46 5.93 -499.46 -2.96 -34.42 16 14 C 0.22 11.35 2.60 44.17 0.11 11.46 16 15 H -0.01 -0.78 7.80 -2.39 -0.02 -0.79 16 16 C -0.12 -5.76 9.19 71.98 0.66 -5.10 16 17 C -0.55 -31.38 8.59 25.60 0.22 -31.16 16 18 H 0.05 2.93 7.62 -2.91 -0.02 2.91 16 19 C 0.02 1.10 5.30 84.65 0.45 1.55 16 20 N -0.91 -52.43 11.32 21.45 0.24 -52.19 16 21 Si 0.96 44.86 29.54 68.60 2.03 46.89 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 25 C -0.10 -3.20 8.24 22.71 0.19 -3.01 16 26 H 0.12 0.71 8.09 -2.39 -0.02 0.69 16 27 H 0.08 1.01 8.12 -2.39 -0.02 0.99 16 28 H 0.13 0.59 8.09 -2.39 -0.02 0.57 16 29 H 0.18 0.57 7.04 -2.91 -0.02 0.55 16 30 H 0.18 0.29 8.06 -2.91 -0.02 0.27 16 31 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 32 H 0.43 6.53 8.82 -92.70 -0.82 5.71 16 33 H 0.07 2.21 8.06 -2.39 -0.02 2.20 16 34 H 0.12 3.54 7.44 -2.39 -0.02 3.53 16 35 H 0.33 16.21 7.93 -89.70 -0.71 15.50 16 36 H 0.03 1.39 7.45 -2.39 -0.02 1.37 16 37 H 0.06 3.37 6.07 -2.38 -0.01 3.36 16 38 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.27 14.42 8.31 -92.70 -0.77 13.65 16 40 H 0.10 4.12 5.81 -2.91 -0.02 4.11 16 Total: -1.00 -82.50 340.41 1.59 -80.91 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -0.45 Total: 21.33 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 4.44 Total: -1.96 kcal Atomic # 7 Polarization: -99.78 SS G_CDS: -4.34 Total: -104.12 kcal Atomic # 8 Polarization: -42.96 SS G_CDS: -0.09 Total: -43.05 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -82.50 1.59 -80.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000639724946.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.985 kcal (2) G-P(sol) polarization free energy of solvation -82.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds