Wall clock time and date at job start Tue Mar 31 2020 06:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09006 * 109.47271 * 2 1 4 4 C 1.50705 * 109.47440 * 119.99892 * 2 1 3 5 5 H 1.07997 * 119.99925 * 120.00134 * 4 2 1 6 6 C 1.37875 * 119.99464 * 300.00236 * 4 2 1 7 7 N 1.31504 * 120.00667 * 359.97438 * 6 4 2 8 8 Si 1.86810 * 119.99691 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46877 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47061 * 119.99821 * 8 6 4 11 11 H 1.48493 * 109.47016 * 240.00142 * 8 6 4 12 12 N 1.46499 * 109.47197 * 239.99849 * 2 1 3 13 13 C 1.46496 * 120.00064 * 300.00161 * 12 2 1 14 14 C 1.34785 * 120.00176 * 119.99969 * 12 2 1 15 15 O 1.21591 * 119.99539 * 4.47136 * 14 12 2 16 16 C 1.47522 * 119.99966 * 184.47101 * 14 12 2 17 17 C 1.39906 * 120.69868 * 311.24623 * 16 14 12 18 18 C 1.38443 * 118.55124 * 180.27202 * 17 16 14 19 19 C 1.38402 * 119.61869 * 359.96603 * 18 17 16 20 20 N 1.32354 * 120.60748 * 0.04763 * 19 18 17 21 21 C 1.32038 * 122.18952 * 359.97438 * 20 19 18 22 22 O 1.35423 * 119.79073 * 180.02562 * 21 20 19 23 23 C 1.51554 * 109.52044 * 180.02562 * 19 18 17 24 24 C 1.54318 * 105.22786 * 342.72830 * 23 19 18 25 25 C 1.51277 * 130.46183 * 179.97438 * 18 17 16 26 26 H 1.09005 * 109.47285 * 300.00476 * 1 2 3 27 27 H 1.08999 * 109.47418 * 59.99852 * 1 2 3 28 28 H 1.08999 * 109.47412 * 180.02562 * 1 2 3 29 29 H 0.97004 * 120.00364 * 180.02562 * 7 6 4 30 30 H 1.09009 * 109.47114 * 273.07464 * 13 12 2 31 31 H 1.08995 * 109.47149 * 33.07528 * 13 12 2 32 32 H 1.08996 * 109.47327 * 153.07706 * 13 12 2 33 33 H 1.08000 * 120.72459 * 0.25495 * 17 16 14 34 34 H 0.96702 * 114.00200 * 269.98615 * 22 21 20 35 35 H 1.08999 * 110.28754 * 101.66448 * 23 19 18 36 36 H 1.09001 * 110.29238 * 223.79028 * 23 19 18 37 37 H 1.08997 * 110.81935 * 268.22134 * 24 23 19 38 38 H 1.09001 * 110.98842 * 144.75853 * 24 23 19 39 39 H 1.08997 * 110.30838 * 316.07466 * 25 18 17 40 40 H 1.08998 * 110.31230 * 78.15328 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.1455 -2.2876 3.6038 10 1 3.1466 -0.1872 4.8165 11 1 1.1661 -1.5866 4.8161 12 7 2.0183 -0.6906 -1.1961 13 6 1.6643 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0834 15 8 3.1541 1.1021 -1.8517 16 6 3.2034 -0.6992 -3.3355 17 6 3.7428 -1.9899 -3.3163 18 6 4.1181 -2.5682 -4.5169 19 6 3.9522 -1.8639 -5.6967 20 7 3.4395 -0.6437 -5.6867 21 6 3.0660 -0.0468 -4.5698 22 8 2.5465 1.2030 -4.6161 23 6 4.4337 -2.7060 -6.8611 24 6 5.3090 -3.8087 -6.2293 25 6 4.7201 -3.9253 -4.8070 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 0.7095 1.1618 3.4844 30 1 2.3856 -2.7378 -0.9254 31 1 0.6671 -2.2864 -1.0327 32 1 1.6771 -2.2990 -2.4982 33 1 3.8641 -2.5235 -2.3851 34 1 3.2059 1.9062 -4.5402 35 1 3.5857 -3.1492 -7.3831 36 1 5.0258 -2.0998 -7.5467 37 1 6.3538 -3.5004 -6.1924 38 1 5.2031 -4.7491 -6.7703 39 1 5.5087 -4.1507 -4.0891 40 1 3.9496 -4.6956 -4.7760 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728873965.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:28 Heat of formation + Delta-G solvation = -60.878871 kcal Electronic energy + Delta-G solvation = -23372.876000 eV Core-core repulsion = 19958.965701 eV Total energy + Delta-G solvation = -3413.910299 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.22037 -40.47763 -38.95406 -37.17118 -36.23924 -35.03464 -33.86006 -31.38570 -29.83719 -28.67803 -27.80820 -27.32250 -24.86909 -24.34183 -22.59104 -21.75772 -20.32380 -19.55224 -18.63100 -18.30207 -17.84897 -17.22631 -17.06673 -16.39765 -16.16490 -15.84645 -15.37566 -14.94575 -14.57383 -14.29719 -14.07217 -13.90236 -13.77004 -13.50075 -13.45108 -13.10614 -12.97332 -12.84111 -12.74895 -12.74647 -12.64734 -12.22420 -12.12575 -12.04306 -11.74731 -11.22288 -11.13134 -10.79928 -10.56516 -10.35658 -9.65275 -9.42037 -8.15942 -6.33066 -0.41756 0.00262 1.41411 1.42835 1.54310 1.65879 2.13387 2.26430 2.42336 2.61358 3.12292 3.22524 3.40786 3.64658 3.85362 3.87343 4.15294 4.25845 4.27351 4.35385 4.58757 4.68154 4.69927 4.83237 4.85317 4.86804 4.87809 4.92710 4.98202 5.00160 5.10764 5.26119 5.39541 5.40832 5.43887 5.54334 5.62478 5.96849 6.11492 6.41498 6.65084 6.73545 6.76009 7.18413 7.40046 8.89126 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023167 B = 0.004342 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.331565 B = 6446.835634 C = 7211.058883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.262 3.738 3 H 0.011 0.989 4 C -0.537 4.537 5 H 0.064 0.936 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.968 3.032 9 H -0.262 1.262 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.589 5.589 13 C 0.081 3.919 14 C 0.553 3.447 15 O -0.589 6.589 16 C -0.202 4.202 17 C -0.021 4.021 18 C -0.159 4.159 19 C 0.145 3.855 20 N -0.520 5.520 21 C 0.342 3.658 22 O -0.489 6.489 23 C -0.071 4.071 24 C -0.108 4.108 25 C -0.074 4.074 26 H 0.072 0.928 27 H 0.016 0.984 28 H 0.049 0.951 29 H 0.265 0.735 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.157 0.843 34 H 0.417 0.583 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.114 0.886 39 H 0.093 0.907 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.554 -14.527 -17.203 23.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.160 3.840 3 H 0.029 0.971 4 C -0.576 4.576 5 H 0.082 0.918 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.793 3.207 9 H -0.186 1.186 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.318 5.318 13 C -0.061 4.061 14 C 0.340 3.660 15 O -0.472 6.472 16 C -0.209 4.209 17 C -0.047 4.047 18 C -0.161 4.161 19 C 0.006 3.994 20 N -0.239 5.239 21 C 0.163 3.837 22 O -0.298 6.298 23 C -0.108 4.108 24 C -0.146 4.146 25 C -0.112 4.112 26 H 0.090 0.910 27 H 0.035 0.965 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.174 0.826 34 H 0.278 0.722 35 H 0.127 0.873 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.133 0.867 39 H 0.112 0.888 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.962 -13.604 -17.716 23.396 hybrid contribution 0.292 0.640 2.051 2.168 sum 7.254 -12.964 -15.665 21.589 Atomic orbital electron populations 1.21901 0.97094 1.00266 0.99977 1.18625 0.91632 0.92327 0.81371 0.97106 1.21562 1.32046 1.13141 0.90825 0.91778 1.25764 0.94993 0.95615 1.02106 1.70029 1.37298 1.23919 1.24466 0.85354 0.78206 0.78488 0.78639 1.18626 1.21199 1.19986 1.48148 1.48108 1.13374 1.22212 1.21956 1.02194 0.80601 1.01333 1.18363 0.78721 0.85481 0.83404 1.90685 1.57542 1.20450 1.78483 1.20859 1.08273 0.98446 0.93324 1.21400 0.92289 0.90984 1.00022 1.21848 1.01362 1.00422 0.92438 1.22733 0.90826 0.87737 0.98067 1.66372 1.13760 1.13322 1.30466 1.18863 0.91306 0.87238 0.86321 1.84602 1.37040 1.13153 1.95032 1.21298 1.01045 0.95016 0.93456 1.22371 0.99078 0.99132 0.93974 1.21142 1.00885 0.90433 0.98712 0.90956 0.96520 0.93160 0.92579 0.91276 0.90774 0.90314 0.82580 0.72239 0.87295 0.88778 0.89965 0.86715 0.88830 0.87577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.70 8.94 71.98 0.64 -6.05 16 2 C 0.26 14.07 2.63 44.24 0.12 14.18 16 3 H 0.01 0.70 6.91 -2.38 -0.02 0.68 16 4 C -0.54 -29.36 8.37 25.60 0.21 -29.15 16 5 H 0.06 3.36 7.56 -2.91 -0.02 3.34 16 6 C 0.01 0.81 5.30 84.66 0.45 1.26 16 7 N -0.92 -53.28 11.32 21.44 0.24 -53.03 16 8 Si 0.97 42.83 29.54 68.60 2.03 44.85 16 9 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 10 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 12 N -0.59 -26.46 2.75 -830.58 -2.29 -28.75 16 13 C 0.08 2.73 8.37 127.77 1.07 3.80 16 14 C 0.55 25.13 6.99 86.69 0.61 25.74 16 15 O -0.59 -31.64 15.88 4.57 0.07 -31.57 16 16 C -0.20 -7.24 4.92 -19.93 -0.10 -7.34 16 17 C -0.02 -0.58 7.74 22.72 0.18 -0.41 16 18 C -0.16 -3.33 6.14 -19.59 -0.12 -3.45 16 19 C 0.14 3.36 7.32 42.79 0.31 3.67 16 20 N -0.52 -16.06 10.36 -295.11 -3.06 -19.12 16 21 C 0.34 12.07 7.75 85.16 0.66 12.73 16 22 O -0.49 -17.77 12.62 -78.61 -0.99 -18.77 16 23 C -0.07 -0.90 6.77 30.57 0.21 -0.69 16 24 C -0.11 -0.80 7.08 31.51 0.22 -0.57 16 25 C -0.07 -0.81 6.77 30.50 0.21 -0.61 16 26 H 0.07 3.96 6.07 -2.38 -0.01 3.95 16 27 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 2.26 6.68 -2.39 -0.02 2.24 16 29 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 30 H 0.07 2.08 7.49 -2.38 -0.02 2.06 16 31 H 0.07 2.47 6.44 -2.39 -0.02 2.46 16 32 H 0.08 2.24 5.66 -2.39 -0.01 2.23 16 33 H 0.16 3.78 6.61 -2.91 -0.02 3.76 16 34 H 0.42 12.23 9.06 -74.06 -0.67 11.56 16 35 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 39 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -76.31 326.64 1.08 -75.23 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.41 Total: 18.04 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 4.66 Total: 13.11 kcal Atomic # 7 Polarization: -95.80 SS G_CDS: -5.10 Total: -100.90 kcal Atomic # 8 Polarization: -49.42 SS G_CDS: -0.92 Total: -50.34 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -76.31 1.08 -75.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728873965.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.355 kcal (2) G-P(sol) polarization free energy of solvation -76.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds