Wall clock time and date at job start Tue Mar 31 2020 06:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.76559 * 2 1 4 4 C 1.53423 * 109.61381 * 239.55285 * 2 1 3 5 5 O 1.43144 * 107.90372 * 177.02728 * 4 2 1 6 6 C 1.36155 * 116.67353 * 45.34047 * 5 4 2 7 7 C 1.38776 * 118.74168 * 165.29888 * 6 5 4 8 8 C 1.38170 * 120.20501 * 179.54483 * 7 6 5 9 9 C 1.38261 * 120.02980 * 0.02562 * 8 7 6 10 10 C 1.38066 * 120.11207 * 0.03784 * 9 8 7 11 11 C 1.38961 * 121.38124 * 344.98484 * 6 5 4 12 12 N 1.39857 * 121.86827 * 0.58468 * 11 6 5 13 13 C 1.46900 * 111.00069 * 104.69459 * 12 11 6 14 14 C 1.50694 * 109.47089 * 83.38907 * 13 12 11 15 15 O 1.21281 * 119.99991 * 7.68597 * 14 13 12 16 16 N 1.34775 * 120.00311 * 187.67812 * 14 13 12 17 17 C 1.46501 * 119.99902 * 180.27693 * 16 14 13 18 18 C 1.50703 * 109.46586 * 179.72973 * 17 16 14 19 19 H 1.07998 * 120.00425 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99729 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00127 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00008 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46997 * 90.00320 * 22 20 18 24 24 H 1.48498 * 109.47340 * 210.00250 * 22 20 18 25 25 H 1.48502 * 109.47213 * 330.00274 * 22 20 18 26 26 H 1.09003 * 109.47416 * 288.80350 * 1 2 3 27 27 H 1.09002 * 109.47029 * 48.80149 * 1 2 3 28 28 H 1.09006 * 109.47736 * 168.80583 * 1 2 3 29 29 H 1.09003 * 109.77711 * 57.42728 * 4 2 1 30 30 H 1.09000 * 109.77087 * 296.62468 * 4 2 1 31 31 H 1.08006 * 119.89784 * 359.52828 * 7 6 5 32 32 H 1.08001 * 119.98510 * 180.02562 * 8 7 6 33 33 H 1.07990 * 119.94217 * 180.02562 * 9 8 7 34 34 H 1.08005 * 119.87812 * 179.97438 * 10 9 8 35 35 H 1.09010 * 109.47183 * 323.39212 * 13 12 11 36 36 H 1.08996 * 109.47418 * 203.39362 * 13 12 11 37 37 H 0.96999 * 119.99742 * 0.02562 * 16 14 13 38 38 H 1.09005 * 109.47081 * 299.72466 * 17 16 14 39 39 H 1.08993 * 109.47482 * 59.73137 * 17 16 14 40 40 H 0.97003 * 120.00277 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8985 1.0258 0.0000 4 6 2.0449 -0.7324 -1.2459 5 8 3.4740 -0.6501 -1.2454 6 6 4.1006 -0.9076 -0.0644 7 6 5.4678 -1.1455 -0.0723 8 6 6.1359 -1.4006 1.1099 9 6 5.4427 -1.4201 2.3061 10 6 4.0822 -1.1857 2.3221 11 6 3.4012 -0.9291 1.1362 12 7 2.0226 -0.7005 1.1918 13 6 1.2891 -1.9552 1.4058 14 6 1.2670 -2.2796 2.8772 15 8 1.6844 -1.4740 3.6821 16 7 0.7834 -3.4647 3.2989 17 6 0.7563 -3.7775 4.7299 18 6 0.1673 -5.1497 4.9330 19 1 -0.1551 -5.7305 4.0815 20 6 0.0390 -5.6632 6.2062 21 7 -0.4755 -6.8604 6.3836 22 14 0.5959 -4.6584 7.6791 23 1 -0.5344 -3.8285 8.1680 24 1 1.0434 -5.5719 8.7610 25 1 1.7213 -3.7759 7.2794 26 1 -0.3634 0.3312 0.9728 27 1 -0.3633 0.6769 -0.7733 28 1 -0.3635 -1.0081 -0.1995 29 1 1.6486 -0.2571 -2.1433 30 1 1.7357 -1.7771 -1.2137 31 1 6.0113 -1.1314 -1.0055 32 1 7.2000 -1.5849 1.0997 33 1 5.9663 -1.6193 3.2293 34 1 3.5444 -1.2022 3.2586 35 1 1.7828 -2.7617 0.8633 36 1 0.2674 -1.8453 1.0425 37 1 0.4498 -4.1091 2.6552 38 1 1.7717 -3.7557 5.1259 39 1 0.1470 -3.0397 5.2517 40 1 -0.5655 -7.2219 7.2792 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744421371.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:05 Heat of formation + Delta-G solvation = -24.559998 kcal Electronic energy + Delta-G solvation = -23418.806784 eV Core-core repulsion = 20006.471390 eV Total energy + Delta-G solvation = -3412.335394 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.43651 -38.90306 -37.61487 -36.64264 -34.29938 -32.39337 -32.30237 -30.45265 -29.63085 -28.00539 -27.20411 -25.73477 -22.96787 -22.33254 -22.02032 -20.36298 -19.42961 -18.28662 -17.57632 -16.74238 -16.66333 -15.90632 -15.58665 -15.42652 -14.96297 -14.69719 -14.39218 -14.32648 -13.85862 -13.74447 -13.40494 -12.98076 -12.78048 -12.58805 -12.52436 -12.29324 -12.07442 -11.65605 -11.54600 -11.29649 -11.08713 -11.01809 -10.93966 -10.70144 -9.99288 -9.54353 -9.46341 -9.06895 -8.79433 -8.33998 -8.15861 -7.93031 -6.23625 -4.26094 1.32464 1.47830 3.08956 3.15057 3.24925 3.29629 3.33794 3.40235 3.78821 4.08248 4.27926 4.31789 4.63302 4.65696 4.76689 4.99556 5.07002 5.09380 5.11843 5.14671 5.24779 5.36717 5.38363 5.43268 5.50431 5.64647 5.69551 5.82702 6.00699 6.27581 6.35845 6.56172 6.69518 6.77419 6.86797 7.02178 7.04716 7.21697 7.36360 7.45314 8.11364 8.48125 8.73154 8.91596 9.36432 10.88321 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020043 B = 0.004339 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.646781 B = 6451.427079 C = 7238.968380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.047 3.953 3 H 0.102 0.898 4 C 0.025 3.975 5 O -0.312 6.312 6 C 0.082 3.918 7 C -0.142 4.142 8 C -0.099 4.099 9 C -0.142 4.142 10 C -0.081 4.081 11 C 0.028 3.972 12 N -0.463 5.463 13 C 0.022 3.978 14 C 0.503 3.497 15 O -0.534 6.534 16 N -0.706 5.706 17 C 0.223 3.777 18 C -0.544 4.544 19 H 0.079 0.921 20 C 0.078 3.922 21 N -0.892 5.892 22 Si 0.877 3.123 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.261 1.261 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.113 0.887 30 H 0.066 0.934 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.159 0.841 35 H 0.067 0.933 36 H 0.115 0.885 37 H 0.395 0.605 38 H 0.025 0.975 39 H 0.021 0.979 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.437 12.100 -15.928 21.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.061 4.061 3 H 0.120 0.880 4 C -0.053 4.053 5 O -0.226 6.226 6 C 0.035 3.965 7 C -0.161 4.161 8 C -0.118 4.118 9 C -0.161 4.161 10 C -0.100 4.100 11 C -0.068 4.068 12 N -0.180 5.180 13 C -0.107 4.107 14 C 0.287 3.713 15 O -0.413 6.413 16 N -0.355 5.355 17 C 0.100 3.900 18 C -0.582 4.582 19 H 0.097 0.903 20 C -0.126 4.126 21 N -0.530 5.530 22 Si 0.703 3.297 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.185 1.185 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.131 0.869 30 H 0.084 0.916 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.177 0.823 35 H 0.085 0.915 36 H 0.133 0.867 37 H 0.228 0.772 38 H 0.043 0.957 39 H 0.039 0.961 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.609 12.871 -14.960 20.811 hybrid contribution -0.029 -0.468 -0.037 0.471 sum 6.580 12.402 -14.996 20.543 Atomic orbital electron populations 1.21960 0.92520 1.02505 1.04001 1.22536 0.97144 0.99238 0.87215 0.87959 1.23677 0.79492 1.01274 1.00816 1.86275 1.20482 1.85762 1.30052 1.19056 0.92940 1.00353 0.84135 1.20352 0.91333 1.05255 0.99171 1.20942 0.99676 0.99316 0.91845 1.21080 0.94261 1.02580 0.98184 1.21803 0.93990 0.95477 0.98753 1.18724 0.89224 1.06398 0.92459 1.58758 1.01019 1.21463 1.36742 1.22410 1.01021 0.90821 0.96405 1.20222 0.78847 0.82381 0.89876 1.90536 1.46866 1.48121 1.55733 1.46172 1.62014 1.16472 1.10872 1.19481 0.97124 0.96536 0.76816 1.21087 1.42799 0.99481 0.94845 0.90297 1.24792 0.94105 0.94829 0.98844 1.69878 1.43949 1.16262 1.22866 0.86817 0.80161 0.80377 0.82338 1.19846 1.20901 1.18481 0.90263 0.91013 0.91713 0.86948 0.91615 0.85534 0.85613 0.85707 0.82332 0.91471 0.86683 0.77161 0.95709 0.96120 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.20 37.15 0.30 -0.95 16 2 C 0.05 0.50 3.05 -67.57 -0.21 0.30 16 3 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.02 0.24 6.34 37.38 0.24 0.48 16 5 O -0.31 -3.98 10.40 -20.23 -0.21 -4.19 16 6 C 0.08 1.16 6.47 -39.11 -0.25 0.90 16 7 C -0.14 -1.79 9.94 -39.41 -0.39 -2.19 16 8 C -0.10 -1.19 10.04 -39.60 -0.40 -1.59 16 9 C -0.14 -1.97 10.03 -39.64 -0.40 -2.36 16 10 C -0.08 -1.32 9.03 -39.31 -0.35 -1.68 16 11 C 0.03 0.43 4.95 -83.59 -0.41 0.02 16 12 N -0.46 -6.60 4.02 -164.64 -0.66 -7.26 16 13 C 0.02 0.31 4.60 -4.98 -0.02 0.28 16 14 C 0.50 9.27 7.21 -10.99 -0.08 9.20 16 15 O -0.53 -11.62 13.47 5.56 0.07 -11.55 16 16 N -0.71 -13.86 5.55 -61.47 -0.34 -14.20 16 17 C 0.22 5.36 4.50 -5.19 -0.02 5.34 16 18 C -0.54 -14.71 9.83 -34.44 -0.34 -15.05 16 19 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 20 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 21 N -0.89 -26.28 13.96 55.43 0.77 -25.51 16 22 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.26 -6.26 6.54 56.52 0.37 -5.90 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.47 6.42 -51.93 -0.33 0.14 16 29 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.61 7.41 -51.93 -0.38 0.23 16 31 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16 32 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 33 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 34 H 0.16 3.00 4.96 -52.48 -0.26 2.74 16 35 H 0.07 0.87 7.65 -51.92 -0.40 0.48 16 36 H 0.12 1.28 4.94 -51.93 -0.26 1.03 16 37 H 0.40 6.81 8.32 -40.82 -0.34 6.47 16 38 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 39 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 40 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 322.65 15.07 4.86 4.86 Total: -1.00 -32.49 322.65 -7.88 -40.38 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -5.28 Total: 6.12 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -2.43 Total: -5.23 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: -0.23 Total: -46.97 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.14 Total: -15.74 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.49 -7.88 -40.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744421371.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.818 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds