Wall clock time and date at job start Tue Mar 31 2020 06:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.76559 * 2 1 4 4 C 1.53423 * 109.61381 * 239.55285 * 2 1 3 5 5 O 1.43144 * 107.90372 * 177.02728 * 4 2 1 6 6 C 1.36155 * 116.67353 * 45.34047 * 5 4 2 7 7 C 1.38776 * 118.74168 * 165.29888 * 6 5 4 8 8 C 1.38170 * 120.20501 * 179.54483 * 7 6 5 9 9 C 1.38261 * 120.02980 * 0.02562 * 8 7 6 10 10 C 1.38066 * 120.11207 * 0.03784 * 9 8 7 11 11 C 1.38961 * 121.38124 * 344.98484 * 6 5 4 12 12 N 1.39857 * 121.86827 * 0.58468 * 11 6 5 13 13 C 1.46900 * 111.00069 * 104.69459 * 12 11 6 14 14 C 1.50694 * 109.47089 * 83.38907 * 13 12 11 15 15 O 1.21281 * 119.99991 * 7.68597 * 14 13 12 16 16 N 1.34775 * 120.00311 * 187.67812 * 14 13 12 17 17 C 1.46501 * 119.99902 * 180.27693 * 16 14 13 18 18 C 1.50703 * 109.46586 * 179.72973 * 17 16 14 19 19 H 1.07998 * 120.00425 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99729 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00127 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00008 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46997 * 90.00320 * 22 20 18 24 24 H 1.48498 * 109.47340 * 210.00250 * 22 20 18 25 25 H 1.48502 * 109.47213 * 330.00274 * 22 20 18 26 26 H 1.09003 * 109.47416 * 288.80350 * 1 2 3 27 27 H 1.09002 * 109.47029 * 48.80149 * 1 2 3 28 28 H 1.09006 * 109.47736 * 168.80583 * 1 2 3 29 29 H 1.09003 * 109.77711 * 57.42728 * 4 2 1 30 30 H 1.09000 * 109.77087 * 296.62468 * 4 2 1 31 31 H 1.08006 * 119.89784 * 359.52828 * 7 6 5 32 32 H 1.08001 * 119.98510 * 180.02562 * 8 7 6 33 33 H 1.07990 * 119.94217 * 180.02562 * 9 8 7 34 34 H 1.08005 * 119.87812 * 179.97438 * 10 9 8 35 35 H 1.09010 * 109.47183 * 323.39212 * 13 12 11 36 36 H 1.08996 * 109.47418 * 203.39362 * 13 12 11 37 37 H 0.96999 * 119.99742 * 0.02562 * 16 14 13 38 38 H 1.09005 * 109.47081 * 299.72466 * 17 16 14 39 39 H 1.08993 * 109.47482 * 59.73137 * 17 16 14 40 40 H 0.97003 * 120.00277 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8985 1.0258 0.0000 4 6 2.0449 -0.7324 -1.2459 5 8 3.4740 -0.6501 -1.2454 6 6 4.1006 -0.9076 -0.0644 7 6 5.4678 -1.1455 -0.0723 8 6 6.1359 -1.4006 1.1099 9 6 5.4427 -1.4201 2.3061 10 6 4.0822 -1.1857 2.3221 11 6 3.4012 -0.9291 1.1362 12 7 2.0226 -0.7005 1.1918 13 6 1.2891 -1.9552 1.4058 14 6 1.2670 -2.2796 2.8772 15 8 1.6844 -1.4740 3.6821 16 7 0.7834 -3.4647 3.2989 17 6 0.7563 -3.7775 4.7299 18 6 0.1673 -5.1497 4.9330 19 1 -0.1551 -5.7305 4.0815 20 6 0.0390 -5.6632 6.2062 21 7 -0.4755 -6.8604 6.3836 22 14 0.5959 -4.6584 7.6791 23 1 -0.5344 -3.8285 8.1680 24 1 1.0434 -5.5719 8.7610 25 1 1.7213 -3.7759 7.2794 26 1 -0.3634 0.3312 0.9728 27 1 -0.3633 0.6769 -0.7733 28 1 -0.3635 -1.0081 -0.1995 29 1 1.6486 -0.2571 -2.1433 30 1 1.7357 -1.7771 -1.2137 31 1 6.0113 -1.1314 -1.0055 32 1 7.2000 -1.5849 1.0997 33 1 5.9663 -1.6193 3.2293 34 1 3.5444 -1.2022 3.2586 35 1 1.7828 -2.7617 0.8633 36 1 0.2674 -1.8453 1.0425 37 1 0.4498 -4.1091 2.6552 38 1 1.7717 -3.7557 5.1259 39 1 0.1470 -3.0397 5.2517 40 1 -0.5655 -7.2219 7.2792 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744421371.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:04 Heat of formation + Delta-G solvation = -48.003269 kcal Electronic energy + Delta-G solvation = -23419.823361 eV Core-core repulsion = 20006.471390 eV Total energy + Delta-G solvation = -3413.351971 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.42735 -40.36208 -38.57899 -37.69867 -36.10215 -34.41207 -33.17762 -31.52052 -30.98404 -29.47894 -28.21941 -26.78639 -24.23318 -23.74888 -23.18334 -21.80885 -20.57895 -19.36804 -19.09172 -18.12722 -17.72915 -17.32584 -16.99266 -16.59267 -16.20295 -15.93087 -15.74882 -15.56902 -15.15523 -14.75384 -14.67086 -14.57023 -14.21732 -13.99533 -13.49288 -13.45332 -13.20712 -13.05849 -12.72830 -12.54153 -12.42818 -12.25816 -11.94642 -11.93078 -11.83124 -11.66205 -10.92495 -10.80900 -10.28578 -9.88876 -9.36986 -8.94621 -8.40570 -6.47326 0.29859 0.42078 1.31830 1.34421 1.46676 1.69525 2.08431 2.27400 2.30725 2.70427 2.86816 2.95074 3.44149 3.74268 3.85048 3.85568 3.98942 4.10548 4.15368 4.19298 4.40382 4.42222 4.45548 4.50544 4.66195 4.78236 4.80159 4.86690 5.03004 5.04258 5.19984 5.25375 5.28947 5.31404 5.51049 5.58130 5.67786 5.86080 6.04843 6.09817 6.44404 6.53621 6.85150 7.15937 7.43067 8.74177 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020043 B = 0.004339 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.646781 B = 6451.427079 C = 7238.968380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.046 3.954 3 H 0.095 0.905 4 C 0.023 3.977 5 O -0.319 6.319 6 C 0.075 3.925 7 C -0.143 4.143 8 C -0.092 4.092 9 C -0.151 4.151 10 C -0.113 4.113 11 C 0.015 3.985 12 N -0.484 5.484 13 C 0.036 3.964 14 C 0.500 3.500 15 O -0.568 6.568 16 N -0.707 5.707 17 C 0.236 3.764 18 C -0.546 4.546 19 H 0.060 0.940 20 C 0.028 3.972 21 N -0.931 5.931 22 Si 0.936 3.064 23 H -0.265 1.265 24 H -0.274 1.274 25 H -0.262 1.262 26 H 0.060 0.940 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.147 0.853 30 H 0.073 0.927 31 H 0.150 0.850 32 H 0.160 0.840 33 H 0.133 0.867 34 H 0.126 0.874 35 H 0.079 0.921 36 H 0.147 0.853 37 H 0.407 0.593 38 H 0.010 0.990 39 H 0.011 0.989 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.954 13.057 -17.965 23.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.061 4.061 3 H 0.113 0.887 4 C -0.054 4.054 5 O -0.233 6.233 6 C 0.028 3.972 7 C -0.162 4.162 8 C -0.110 4.110 9 C -0.170 4.170 10 C -0.132 4.132 11 C -0.081 4.081 12 N -0.202 5.202 13 C -0.092 4.092 14 C 0.287 3.713 15 O -0.448 6.448 16 N -0.357 5.357 17 C 0.112 3.888 18 C -0.584 4.584 19 H 0.078 0.922 20 C -0.172 4.172 21 N -0.570 5.570 22 Si 0.760 3.240 23 H -0.190 1.190 24 H -0.199 1.199 25 H -0.186 1.186 26 H 0.079 0.921 27 H 0.118 0.882 28 H 0.096 0.904 29 H 0.164 0.836 30 H 0.091 0.909 31 H 0.168 0.832 32 H 0.177 0.823 33 H 0.151 0.849 34 H 0.143 0.857 35 H 0.097 0.903 36 H 0.164 0.836 37 H 0.243 0.757 38 H 0.028 0.972 39 H 0.029 0.971 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.115 13.835 -17.037 23.071 hybrid contribution -0.176 -0.736 0.513 0.914 sum 6.939 13.099 -16.523 22.198 Atomic orbital electron populations 1.21956 0.90568 1.04005 1.03997 1.22648 0.98624 0.98462 0.86384 0.88735 1.23944 0.77934 1.01931 1.01543 1.86265 1.22148 1.85605 1.29262 1.19212 0.93602 1.00275 0.84134 1.20748 0.91065 1.04055 1.00324 1.21278 1.01165 0.97792 0.90763 1.21270 0.93583 1.02529 0.99622 1.21673 0.95182 0.98289 0.98057 1.18801 0.89830 1.06875 0.92581 1.58655 1.00830 1.21612 1.39109 1.22317 1.03006 0.91418 0.92464 1.21056 0.77195 0.81130 0.91916 1.90535 1.47889 1.49074 1.57324 1.46002 1.62797 1.17626 1.09291 1.19050 0.95589 0.94622 0.79555 1.21291 1.42250 1.00446 0.94381 0.92215 1.25569 0.94240 0.95750 1.01662 1.69977 1.45387 1.17803 1.23815 0.85882 0.79828 0.79065 0.79258 1.18977 1.19854 1.18606 0.92089 0.88222 0.90373 0.83573 0.90924 0.83203 0.82280 0.84873 0.85682 0.90252 0.83613 0.75745 0.97223 0.97065 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.20 71.98 0.59 -1.44 16 2 C 0.05 0.89 3.05 45.08 0.14 1.03 16 3 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 4 C 0.02 0.37 6.34 72.12 0.46 0.83 16 5 O -0.32 -7.33 10.40 -95.31 -0.99 -8.32 16 6 C 0.08 2.00 6.47 22.57 0.15 2.14 16 7 C -0.14 -3.29 9.94 22.38 0.22 -3.06 16 8 C -0.09 -2.02 10.04 22.26 0.22 -1.80 16 9 C -0.15 -4.16 10.03 22.23 0.22 -3.93 16 10 C -0.11 -3.77 9.03 22.45 0.20 -3.56 16 11 C 0.02 0.47 4.95 38.25 0.19 0.66 16 12 N -0.48 -13.45 4.02 -674.79 -2.71 -16.17 16 13 C 0.04 0.96 4.60 85.56 0.39 1.35 16 14 C 0.50 18.59 7.21 87.66 0.63 19.22 16 15 O -0.57 -25.48 13.47 -3.03 -0.04 -25.52 16 16 N -0.71 -27.93 5.55 -466.79 -2.59 -30.52 16 17 C 0.24 11.52 4.50 85.63 0.38 11.91 16 18 C -0.55 -29.99 9.83 25.60 0.25 -29.74 16 19 H 0.06 3.43 7.84 -2.91 -0.02 3.41 16 20 C 0.03 1.59 5.47 84.66 0.46 2.05 16 21 N -0.93 -55.46 13.96 21.45 0.30 -55.16 16 22 Si 0.94 44.16 27.47 68.60 1.88 46.04 16 23 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 24 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 25 H -0.26 -12.30 6.54 99.48 0.65 -11.65 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.08 0.86 6.42 -2.38 -0.02 0.84 16 29 H 0.15 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 1.10 7.41 -2.39 -0.02 1.08 16 31 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 32 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 33 H 0.13 3.26 8.06 -2.92 -0.02 3.23 16 34 H 0.13 5.04 4.96 -2.91 -0.01 5.02 16 35 H 0.08 1.93 7.65 -2.38 -0.02 1.91 16 36 H 0.15 2.90 4.94 -2.39 -0.01 2.89 16 37 H 0.41 13.96 8.32 -92.71 -0.77 13.19 16 38 H 0.01 0.51 7.20 -2.38 -0.02 0.49 16 39 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 40 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -72.14 322.65 0.60 -71.54 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.24 Total: 22.46 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 4.52 Total: -4.35 kcal Atomic # 7 Polarization: -96.84 SS G_CDS: -5.00 Total: -101.84 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -1.03 Total: -33.84 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.88 Total: 46.04 kcal Total: -72.14 0.60 -71.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744421371.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.532 kcal (2) G-P(sol) polarization free energy of solvation -72.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds