Wall clock time and date at job start Tue Mar 31 2020 06:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.75754 * 2 1 4 4 C 1.53425 * 109.61281 * 120.44628 * 2 1 3 5 5 O 1.43142 * 107.89240 * 183.01448 * 4 2 1 6 6 C 1.36155 * 116.66740 * 314.65828 * 5 4 2 7 7 C 1.38775 * 118.74079 * 194.79608 * 6 5 4 8 8 C 1.38175 * 120.20338 * 180.27679 * 7 6 5 9 9 C 1.38264 * 120.02622 * 0.02562 * 8 7 6 10 10 C 1.38062 * 120.11873 * 359.90794 * 9 8 7 11 11 C 1.38966 * 121.38135 * 14.91560 * 6 5 4 12 12 N 1.39855 * 121.87143 * 359.59982 * 11 6 5 13 13 C 1.46904 * 110.99909 * 255.15799 * 12 11 6 14 14 C 1.50701 * 109.47086 * 288.85169 * 13 12 11 15 15 O 1.21281 * 119.99942 * 336.98219 * 14 13 12 16 16 N 1.34774 * 119.99889 * 156.98408 * 14 13 12 17 17 C 1.46511 * 119.99747 * 180.02562 * 16 14 13 18 18 C 1.50693 * 109.46714 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00448 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99846 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99727 * 0.27706 * 20 18 17 22 22 Si 1.86796 * 120.00223 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47304 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47214 * 120.00017 * 22 20 18 25 25 H 1.48495 * 109.47332 * 240.00240 * 22 20 18 26 26 H 1.09000 * 109.47415 * 180.44137 * 1 2 3 27 27 H 1.09002 * 109.47750 * 300.44569 * 1 2 3 28 28 H 1.09005 * 109.46930 * 60.44921 * 1 2 3 29 29 H 1.09004 * 109.77753 * 63.41898 * 4 2 1 30 30 H 1.09007 * 109.78036 * 302.61256 * 4 2 1 31 31 H 1.07996 * 119.90084 * 0.25457 * 7 6 5 32 32 H 1.07995 * 119.98828 * 180.02562 * 8 7 6 33 33 H 1.08007 * 119.93745 * 179.91598 * 9 8 7 34 34 H 1.08000 * 119.88054 * 180.02562 * 10 9 8 35 35 H 1.09002 * 109.46862 * 168.85423 * 13 12 11 36 36 H 1.08994 * 109.47209 * 48.85135 * 13 12 11 37 37 H 0.96990 * 120.00255 * 0.02562 * 16 14 13 38 38 H 1.08995 * 109.46710 * 59.99840 * 17 16 14 39 39 H 1.08997 * 109.46730 * 299.99652 * 17 16 14 40 40 H 0.96995 * 120.00121 * 359.71918 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8984 1.0258 0.0000 4 6 2.0450 -0.7323 1.2459 5 8 3.4740 -0.6491 1.2457 6 6 4.1009 -0.9059 0.0647 7 6 5.4679 -1.1449 0.0730 8 6 6.1356 -1.4031 -1.1089 9 6 5.4423 -1.4235 -2.3050 10 6 4.0820 -1.1881 -2.3214 11 6 3.4012 -0.9297 -1.1357 12 7 2.0227 -0.7005 -1.1917 13 6 1.2887 -1.9548 -1.4062 14 6 1.5181 -2.4363 -2.8157 15 8 1.8471 -1.6505 -3.6789 16 7 1.3575 -3.7401 -3.1169 17 6 1.5810 -4.2082 -4.4871 18 6 1.3376 -5.6938 -4.5563 19 1 1.0460 -6.2352 -3.6684 20 6 1.4872 -6.3619 -5.7531 21 7 1.8475 -5.7035 -6.8331 22 14 1.1848 -8.2032 -5.8391 23 1 0.7990 -8.7048 -4.4956 24 1 0.0910 -8.4807 -6.8044 25 1 2.4244 -8.8881 -6.2853 26 1 -0.3634 -1.0276 0.0079 27 1 -0.3635 0.5207 0.8859 28 1 -0.3633 0.5069 -0.8940 29 1 1.7364 -1.7773 1.2135 30 1 1.6480 -0.2576 2.1433 31 1 6.0116 -1.1287 1.0060 32 1 7.1993 -1.5890 -1.0983 33 1 5.9659 -1.6241 -3.2281 34 1 3.5442 -1.2054 -3.2578 35 1 0.2237 -1.7838 -1.2495 36 1 1.6432 -2.7081 -0.7028 37 1 1.0939 -4.3684 -2.4267 38 1 2.6087 -3.9947 -4.7808 39 1 0.8960 -3.6956 -5.1624 40 1 2.0041 -4.7473 -6.7885 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744421374.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:06 Heat of formation + Delta-G solvation = -28.420573 kcal Electronic energy + Delta-G solvation = -23548.539630 eV Core-core repulsion = 20136.036828 eV Total energy + Delta-G solvation = -3412.502802 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.43672 -38.92272 -37.57038 -36.61098 -34.46042 -32.50388 -32.26898 -30.38540 -29.44526 -27.63959 -26.75149 -25.50205 -22.98527 -22.66137 -22.12403 -20.42361 -19.38143 -18.30925 -17.64162 -16.84466 -16.60169 -16.00740 -15.49178 -15.38212 -14.81858 -14.77438 -14.29448 -14.06984 -13.82788 -13.77047 -13.32795 -12.97465 -12.77388 -12.57913 -12.47705 -12.23778 -11.99873 -11.62253 -11.48878 -11.26339 -11.05882 -10.98363 -10.86725 -10.68567 -10.22018 -9.41880 -9.13510 -8.81716 -8.69901 -8.28168 -8.03411 -7.89534 -6.54834 -4.28736 1.37710 1.54082 3.02505 3.16529 3.35207 3.39169 3.40114 3.52035 3.84283 4.06259 4.28191 4.42802 4.64467 4.66472 4.80691 5.00454 5.06010 5.12337 5.15355 5.24225 5.27151 5.36962 5.43057 5.48511 5.49471 5.66523 5.76105 5.81143 6.04927 6.32694 6.42144 6.60851 6.76482 6.88143 6.96433 7.05110 7.17376 7.27258 7.49383 7.61189 8.23635 8.40238 8.67427 8.91053 9.44841 10.85450 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019163 B = 0.004310 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.784925 B = 6494.462214 C = 7188.318799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.047 3.953 3 H 0.103 0.897 4 C 0.024 3.976 5 O -0.312 6.312 6 C 0.082 3.918 7 C -0.143 4.143 8 C -0.098 4.098 9 C -0.141 4.141 10 C -0.087 4.087 11 C 0.024 3.976 12 N -0.462 5.462 13 C 0.025 3.975 14 C 0.501 3.499 15 O -0.533 6.533 16 N -0.705 5.705 17 C 0.241 3.759 18 C -0.624 4.624 19 H 0.057 0.943 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 1.081 2.919 23 H -0.289 1.289 24 H -0.285 1.285 25 H -0.285 1.285 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.112 0.888 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.167 0.833 35 H 0.118 0.882 36 H 0.058 0.942 37 H 0.392 0.608 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.889 9.402 17.215 19.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.062 4.062 3 H 0.121 0.879 4 C -0.053 4.053 5 O -0.226 6.226 6 C 0.035 3.965 7 C -0.162 4.162 8 C -0.117 4.117 9 C -0.160 4.160 10 C -0.106 4.106 11 C -0.072 4.072 12 N -0.180 5.180 13 C -0.103 4.103 14 C 0.285 3.715 15 O -0.412 6.412 16 N -0.354 5.354 17 C 0.120 3.880 18 C -0.662 4.662 19 H 0.075 0.925 20 C -0.182 4.182 21 N -0.537 5.537 22 Si 0.908 3.092 23 H -0.215 1.215 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.130 0.870 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.184 0.816 35 H 0.135 0.865 36 H 0.076 0.924 37 H 0.225 0.775 38 H 0.036 0.964 39 H 0.035 0.965 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.061 9.001 15.316 17.797 hybrid contribution -0.170 0.533 1.984 2.061 sum 0.891 9.534 17.300 19.773 Atomic orbital electron populations 1.21974 0.92563 1.02913 1.03574 1.22518 0.97126 0.99249 0.87260 0.87918 1.23651 0.79602 1.01299 1.00742 1.86270 1.20389 1.85828 1.30090 1.19046 0.92953 1.00461 0.84070 1.20338 0.91335 1.05394 0.99148 1.20959 0.99696 0.99169 0.91862 1.21113 0.94329 1.02325 0.98209 1.22155 0.94159 0.95049 0.99207 1.18725 0.89162 1.06777 0.92528 1.58832 1.01121 1.21267 1.36761 1.22417 1.01095 0.90490 0.96325 1.20170 0.78636 0.83040 0.89604 1.90480 1.46806 1.54522 1.49388 1.46307 1.67706 1.07235 1.14122 1.19179 0.96128 0.95078 0.77623 1.22105 1.53321 0.92293 0.98474 0.92453 1.25864 0.93608 1.07067 0.91710 1.70700 1.41804 1.11144 1.30025 0.83379 0.76958 0.73531 0.75310 1.21464 1.21117 1.21111 0.91582 0.91094 0.90459 0.91682 0.86971 0.85558 0.85605 0.85674 0.81568 0.86469 0.92351 0.77545 0.96450 0.96455 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.50 37.16 0.32 -0.96 16 2 C 0.05 0.52 3.05 -67.57 -0.21 0.31 16 3 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 4 C 0.02 0.25 6.36 37.38 0.24 0.49 16 5 O -0.31 -4.20 10.40 -20.23 -0.21 -4.41 16 6 C 0.08 1.23 6.47 -39.11 -0.25 0.97 16 7 C -0.14 -1.95 9.94 -39.41 -0.39 -2.35 16 8 C -0.10 -1.31 10.04 -39.59 -0.40 -1.70 16 9 C -0.14 -2.17 10.03 -39.64 -0.40 -2.57 16 10 C -0.09 -1.54 8.64 -39.31 -0.34 -1.88 16 11 C 0.02 0.39 5.05 -83.59 -0.42 -0.03 16 12 N -0.46 -6.89 4.20 -164.64 -0.69 -7.58 16 13 C 0.03 0.37 4.62 -4.97 -0.02 0.35 16 14 C 0.50 9.74 6.60 -10.99 -0.07 9.66 16 15 O -0.53 -12.16 13.36 5.56 0.07 -12.09 16 16 N -0.71 -14.59 5.55 -61.47 -0.34 -14.94 16 17 C 0.24 6.23 4.74 -5.19 -0.02 6.20 16 18 C -0.62 -16.91 9.28 -34.44 -0.32 -17.23 16 19 H 0.06 1.49 7.60 -52.49 -0.40 1.09 16 20 C 0.02 0.65 5.46 -17.82 -0.10 0.56 16 21 N -0.90 -27.01 13.65 55.43 0.76 -26.25 16 22 Si 1.08 24.30 29.90 -169.99 -5.08 19.22 16 23 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 26 H 0.07 0.51 6.00 -51.93 -0.31 0.20 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.65 7.07 -51.93 -0.37 0.28 16 30 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.13 1.75 8.06 -52.48 -0.42 1.33 16 34 H 0.17 3.42 4.59 -52.51 -0.24 3.18 16 35 H 0.12 1.40 5.19 -51.93 -0.27 1.13 16 36 H 0.06 0.78 7.29 -51.93 -0.38 0.40 16 37 H 0.39 7.09 8.32 -40.82 -0.34 6.75 16 38 H 0.02 0.49 8.00 -51.93 -0.42 0.08 16 39 H 0.02 0.49 8.01 -51.93 -0.42 0.08 16 40 H 0.27 8.27 7.22 -40.82 -0.29 7.98 16 LS Contribution 323.19 15.07 4.87 4.87 Total: -1.00 -32.80 323.19 -8.20 -41.00 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -5.19 Total: 8.34 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -2.39 Total: -8.17 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.28 Total: -48.77 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.14 Total: -16.49 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -5.08 Total: 19.22 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.80 -8.20 -41.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744421374.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.581 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds