Wall clock time and date at job start Tue Mar 31 2020 06:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.75754 * 2 1 4 4 C 1.53425 * 109.61281 * 120.44628 * 2 1 3 5 5 O 1.43142 * 107.89240 * 183.01448 * 4 2 1 6 6 C 1.36155 * 116.66740 * 314.65828 * 5 4 2 7 7 C 1.38775 * 118.74079 * 194.79608 * 6 5 4 8 8 C 1.38175 * 120.20338 * 180.27679 * 7 6 5 9 9 C 1.38264 * 120.02622 * 0.02562 * 8 7 6 10 10 C 1.38062 * 120.11873 * 359.90794 * 9 8 7 11 11 C 1.38966 * 121.38135 * 14.91560 * 6 5 4 12 12 N 1.39855 * 121.87143 * 359.59982 * 11 6 5 13 13 C 1.46904 * 110.99909 * 255.15799 * 12 11 6 14 14 C 1.50701 * 109.47086 * 288.85169 * 13 12 11 15 15 O 1.21281 * 119.99942 * 336.98219 * 14 13 12 16 16 N 1.34774 * 119.99889 * 156.98408 * 14 13 12 17 17 C 1.46511 * 119.99747 * 180.02562 * 16 14 13 18 18 C 1.50693 * 109.46714 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00448 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99846 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99727 * 0.27706 * 20 18 17 22 22 Si 1.86796 * 120.00223 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47304 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47214 * 120.00017 * 22 20 18 25 25 H 1.48495 * 109.47332 * 240.00240 * 22 20 18 26 26 H 1.09000 * 109.47415 * 180.44137 * 1 2 3 27 27 H 1.09002 * 109.47750 * 300.44569 * 1 2 3 28 28 H 1.09005 * 109.46930 * 60.44921 * 1 2 3 29 29 H 1.09004 * 109.77753 * 63.41898 * 4 2 1 30 30 H 1.09007 * 109.78036 * 302.61256 * 4 2 1 31 31 H 1.07996 * 119.90084 * 0.25457 * 7 6 5 32 32 H 1.07995 * 119.98828 * 180.02562 * 8 7 6 33 33 H 1.08007 * 119.93745 * 179.91598 * 9 8 7 34 34 H 1.08000 * 119.88054 * 180.02562 * 10 9 8 35 35 H 1.09002 * 109.46862 * 168.85423 * 13 12 11 36 36 H 1.08994 * 109.47209 * 48.85135 * 13 12 11 37 37 H 0.96990 * 120.00255 * 0.02562 * 16 14 13 38 38 H 1.08995 * 109.46710 * 59.99840 * 17 16 14 39 39 H 1.08997 * 109.46730 * 299.99652 * 17 16 14 40 40 H 0.96995 * 120.00121 * 359.71918 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8984 1.0258 0.0000 4 6 2.0450 -0.7323 1.2459 5 8 3.4740 -0.6491 1.2457 6 6 4.1009 -0.9059 0.0647 7 6 5.4679 -1.1449 0.0730 8 6 6.1356 -1.4031 -1.1089 9 6 5.4423 -1.4235 -2.3050 10 6 4.0820 -1.1881 -2.3214 11 6 3.4012 -0.9297 -1.1357 12 7 2.0227 -0.7005 -1.1917 13 6 1.2887 -1.9548 -1.4062 14 6 1.5181 -2.4363 -2.8157 15 8 1.8471 -1.6505 -3.6789 16 7 1.3575 -3.7401 -3.1169 17 6 1.5810 -4.2082 -4.4871 18 6 1.3376 -5.6938 -4.5563 19 1 1.0460 -6.2352 -3.6684 20 6 1.4872 -6.3619 -5.7531 21 7 1.8475 -5.7035 -6.8331 22 14 1.1848 -8.2032 -5.8391 23 1 0.7990 -8.7048 -4.4956 24 1 0.0910 -8.4807 -6.8044 25 1 2.4244 -8.8881 -6.2853 26 1 -0.3634 -1.0276 0.0079 27 1 -0.3635 0.5207 0.8859 28 1 -0.3633 0.5069 -0.8940 29 1 1.7364 -1.7773 1.2135 30 1 1.6480 -0.2576 2.1433 31 1 6.0116 -1.1287 1.0060 32 1 7.1993 -1.5890 -1.0983 33 1 5.9659 -1.6241 -3.2281 34 1 3.5442 -1.2054 -3.2578 35 1 0.2237 -1.7838 -1.2495 36 1 1.6432 -2.7081 -0.7028 37 1 1.0939 -4.3684 -2.4267 38 1 2.6087 -3.9947 -4.7808 39 1 0.8960 -3.6956 -5.1624 40 1 2.0041 -4.7473 -6.7885 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744421374.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:06 Heat of formation + Delta-G solvation = -52.258255 kcal Electronic energy + Delta-G solvation = -23549.573309 eV Core-core repulsion = 20136.036828 eV Total energy + Delta-G solvation = -3413.536481 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.51566 -40.47146 -38.63117 -37.74552 -36.39667 -34.48982 -33.20647 -31.52963 -30.76323 -28.94630 -28.08166 -26.76548 -24.79542 -23.88297 -23.26253 -21.89469 -20.63253 -19.56015 -19.17923 -18.29182 -17.77565 -17.35553 -16.79551 -16.62244 -16.12583 -15.95490 -15.63423 -15.61254 -15.24141 -14.81670 -14.71413 -14.46396 -14.34937 -14.00233 -13.58861 -13.51734 -13.19570 -13.11602 -12.62444 -12.57122 -12.44905 -12.28597 -11.97974 -11.88529 -11.83095 -11.01871 -10.83569 -10.75736 -10.35995 -9.93444 -9.40968 -8.99967 -8.80644 -6.56156 0.24305 0.36882 1.53632 1.55016 1.64670 1.79891 2.06981 2.25792 2.52743 2.63465 2.79653 3.07477 3.40791 3.68946 3.78867 3.81743 3.93074 4.05272 4.07564 4.14911 4.35833 4.38187 4.42784 4.47233 4.62543 4.76168 4.77678 4.83585 4.94925 5.00502 5.17377 5.23252 5.26347 5.41272 5.49673 5.55125 5.64422 5.81346 5.98939 6.07548 6.30601 6.39553 6.76325 7.22199 7.38459 8.58758 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019163 B = 0.004310 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.784925 B = 6494.462214 C = 7188.318799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.046 3.954 3 H 0.096 0.904 4 C 0.022 3.978 5 O -0.317 6.317 6 C 0.078 3.922 7 C -0.142 4.142 8 C -0.091 4.091 9 C -0.156 4.156 10 C -0.121 4.121 11 C 0.014 3.986 12 N -0.485 5.485 13 C 0.041 3.959 14 C 0.497 3.503 15 O -0.571 6.571 16 N -0.703 5.703 17 C 0.257 3.743 18 C -0.629 4.629 19 H 0.074 0.926 20 C -0.031 4.031 21 N -0.930 5.930 22 Si 1.133 2.867 23 H -0.260 1.260 24 H -0.279 1.279 25 H -0.280 1.280 26 H 0.075 0.925 27 H 0.102 0.898 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.150 0.850 31 H 0.154 0.846 32 H 0.160 0.840 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.149 0.851 36 H 0.077 0.923 37 H 0.407 0.593 38 H -0.018 1.018 39 H -0.015 1.015 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.324 8.492 20.863 22.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.061 4.061 3 H 0.114 0.886 4 C -0.055 4.055 5 O -0.231 6.231 6 C 0.030 3.970 7 C -0.161 4.161 8 C -0.109 4.109 9 C -0.174 4.174 10 C -0.140 4.140 11 C -0.083 4.083 12 N -0.203 5.203 13 C -0.087 4.087 14 C 0.284 3.716 15 O -0.451 6.451 16 N -0.353 5.353 17 C 0.134 3.866 18 C -0.666 4.666 19 H 0.093 0.907 20 C -0.230 4.230 21 N -0.566 5.566 22 Si 0.953 3.047 23 H -0.184 1.184 24 H -0.204 1.204 25 H -0.206 1.206 26 H 0.094 0.906 27 H 0.121 0.879 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.167 0.833 31 H 0.171 0.829 32 H 0.177 0.823 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.167 0.833 36 H 0.095 0.905 37 H 0.243 0.757 38 H 0.000 1.000 39 H 0.003 0.997 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.477 8.122 19.026 20.692 hybrid contribution 0.028 0.954 0.889 1.304 sum 0.505 9.075 19.915 21.891 Atomic orbital electron populations 1.21979 0.90283 1.03796 1.04485 1.22659 0.98871 0.98430 0.86189 0.88615 1.23959 0.77871 1.02024 1.01610 1.86266 1.22218 1.85566 1.29024 1.19183 0.93578 1.00101 0.84107 1.20751 0.91119 1.03964 1.00240 1.21277 1.01178 0.97711 0.90719 1.21260 0.93792 1.02803 0.99584 1.21963 0.95312 0.98173 0.98602 1.18775 0.89963 1.07044 0.92474 1.58730 1.00721 1.21445 1.39413 1.22333 1.02990 0.91014 0.92371 1.21133 0.76917 0.81957 0.91631 1.90488 1.47907 1.55428 1.51319 1.46058 1.68457 1.08426 1.12387 1.18641 0.93169 0.94835 0.79985 1.22460 1.52347 0.92671 0.99135 0.90741 1.27608 0.92431 1.11588 0.91357 1.70848 1.44211 1.10170 1.31347 0.82745 0.77174 0.67871 0.76913 1.18433 1.20426 1.20604 0.90624 0.87936 0.91825 0.90951 0.83283 0.82865 0.82254 0.85577 0.85365 0.83338 0.90487 0.75742 1.00007 0.99745 0.93652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.50 71.98 0.61 -1.38 16 2 C 0.05 0.91 3.05 45.09 0.14 1.04 16 3 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 4 C 0.02 0.36 6.36 72.12 0.46 0.82 16 5 O -0.32 -7.59 10.40 -95.31 -0.99 -8.58 16 6 C 0.08 2.21 6.47 22.57 0.15 2.36 16 7 C -0.14 -3.56 9.94 22.38 0.22 -3.34 16 8 C -0.09 -2.28 10.04 22.26 0.22 -2.06 16 9 C -0.16 -4.96 10.03 22.23 0.22 -4.73 16 10 C -0.12 -4.54 8.64 22.44 0.19 -4.34 16 11 C 0.01 0.45 5.05 38.25 0.19 0.64 16 12 N -0.49 -14.19 4.20 -674.80 -2.84 -17.03 16 13 C 0.04 1.14 4.62 85.56 0.39 1.54 16 14 C 0.50 19.91 6.60 87.66 0.58 20.49 16 15 O -0.57 -27.86 13.36 -3.03 -0.04 -27.90 16 16 N -0.70 -29.81 5.55 -466.79 -2.59 -32.40 16 17 C 0.26 13.98 4.74 85.63 0.41 14.39 16 18 C -0.63 -34.48 9.28 25.60 0.24 -34.24 16 19 H 0.07 3.76 7.60 -2.91 -0.02 3.74 16 20 C -0.03 -1.76 5.46 84.66 0.46 -1.29 16 21 N -0.93 -57.66 13.65 21.45 0.29 -57.37 16 22 Si 1.13 48.08 29.90 68.60 2.05 50.13 16 23 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 24 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 25 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 26 H 0.08 0.87 6.00 -2.39 -0.01 0.86 16 27 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.07 1.14 7.07 -2.39 -0.02 1.12 16 30 H 0.15 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 32 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 33 H 0.13 3.79 8.06 -2.91 -0.02 3.77 16 34 H 0.13 5.81 4.59 -3.25 -0.01 5.80 16 35 H 0.15 3.18 5.19 -2.39 -0.01 3.17 16 36 H 0.08 1.88 7.29 -2.39 -0.02 1.87 16 37 H 0.41 14.49 8.32 -92.72 -0.77 13.72 16 38 H -0.02 -1.09 8.00 -2.39 -0.02 -1.11 16 39 H -0.02 -0.92 8.01 -2.39 -0.02 -0.94 16 40 H 0.25 16.38 7.22 -92.71 -0.67 15.71 16 Total: -1.00 -76.14 323.19 0.77 -75.37 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 0.40 Total: 27.90 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 4.49 Total: -10.12 kcal Atomic # 7 Polarization: -101.66 SS G_CDS: -5.13 Total: -106.80 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -1.03 Total: -36.48 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.05 Total: 50.13 kcal Total: -76.14 0.77 -75.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744421374.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.114 kcal (2) G-P(sol) polarization free energy of solvation -76.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds