Wall clock time and date at job start Tue Mar 31 2020 06:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50707 * 120.00037 * 2 1 4 4 H 1.09003 * 109.46727 * 5.00044 * 3 2 1 5 5 C 1.52994 * 109.46993 * 124.99829 * 3 2 1 6 6 N 1.46492 * 109.47385 * 245.00300 * 3 2 1 7 7 C 1.34777 * 120.00434 * 154.99831 * 6 3 2 8 8 O 1.21591 * 119.99393 * 0.02562 * 7 6 3 9 9 N 1.34768 * 120.00297 * 179.97438 * 7 6 3 10 10 C 1.46503 * 120.00179 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47448 * 180.02562 * 10 9 7 12 12 C 1.38299 * 119.93217 * 269.73027 * 11 10 9 13 13 C 1.38093 * 120.06953 * 179.72477 * 12 11 10 14 14 C 1.38883 * 119.92808 * 0.56550 * 13 12 11 15 15 O 1.35754 * 120.06438 * 179.68623 * 14 13 12 16 16 C 1.34826 * 116.99724 * 174.49160 * 15 14 13 17 17 H 1.07998 * 120.00100 * 5.04739 * 16 15 14 18 18 C 1.38654 * 119.99970 * 185.05457 * 16 15 14 19 19 N 1.31557 * 120.00012 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99959 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46896 * 90.00233 * 20 18 16 22 22 H 1.48505 * 109.47024 * 209.99798 * 20 18 16 23 23 H 1.48496 * 109.47185 * 330.00029 * 20 18 16 24 24 C 1.38871 * 119.86468 * 359.70509 * 14 13 12 25 25 C 1.38101 * 119.93230 * 0.02562 * 24 14 13 26 26 H 1.08000 * 119.99632 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.00414 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00027 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47209 * 60.00510 * 5 3 2 30 30 H 1.08995 * 109.47200 * 180.02562 * 5 3 2 31 31 H 1.09004 * 109.47423 * 300.00377 * 5 3 2 32 32 H 0.97007 * 119.99685 * 334.99860 * 6 3 2 33 33 H 0.97000 * 120.00448 * 0.02562 * 9 7 6 34 34 H 1.09002 * 109.46848 * 59.99850 * 10 9 7 35 35 H 1.09001 * 109.46885 * 300.00464 * 10 9 7 36 36 H 1.08005 * 119.96050 * 359.97425 * 12 11 10 37 37 H 1.07999 * 120.03730 * 180.26989 * 13 12 11 38 38 H 0.97002 * 120.00021 * 179.97438 * 19 18 16 39 39 H 1.08002 * 120.03853 * 179.97438 * 24 14 13 40 40 H 1.07997 * 119.96732 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3585 2.1317 0.0896 5 6 3.0350 1.3331 1.1816 6 7 2.8131 1.4363 -1.2517 7 6 3.1404 2.6583 -1.7165 8 8 2.8139 3.6520 -1.0964 9 7 3.8305 2.7789 -2.8678 10 6 4.1867 4.1073 -3.3727 11 6 4.9490 3.9658 -4.6650 12 6 6.3280 3.8631 -4.6451 13 6 7.0288 3.7277 -5.8272 14 6 6.3483 3.7064 -7.0377 15 8 7.0350 3.5798 -8.2019 16 6 6.3084 3.4514 -9.3303 17 1 5.2323 3.5341 -9.2919 18 6 6.9427 3.2131 -10.5400 19 7 8.2536 3.1127 -10.5868 20 14 5.9358 3.0345 -12.1032 21 1 5.7668 4.3663 -12.7380 22 1 6.6380 2.1238 -13.0429 23 1 4.6024 2.4713 -11.7716 24 6 4.9640 3.8154 -7.0547 25 6 4.2683 3.9450 -5.8688 26 1 -0.5399 -0.9353 -0.0004 27 1 -0.5401 0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 3.7400 0.5066 1.0920 30 1 3.5797 2.2772 1.1819 31 1 2.4772 1.2356 2.1130 32 1 3.0740 0.6435 -1.7462 33 1 4.0914 1.9862 -3.3623 34 1 4.8077 4.6204 -2.6384 35 1 3.2790 4.6847 -3.5479 36 1 6.8570 3.8849 -3.7037 37 1 8.1054 3.6432 -5.8108 38 1 8.6973 2.9456 -11.4330 39 1 4.4320 3.7996 -7.9945 40 1 3.1918 4.0302 -5.8814 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756975441.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:52 Heat of formation + Delta-G solvation = -17.545543 kcal Electronic energy + Delta-G solvation = -21603.491349 eV Core-core repulsion = 18191.460124 eV Total energy + Delta-G solvation = -3412.031225 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.08140 -39.10634 -37.15268 -36.43961 -34.30098 -32.89835 -32.33927 -30.36730 -30.23160 -29.20170 -25.90052 -24.79752 -23.37644 -22.05296 -20.77510 -20.64943 -20.42760 -18.30755 -18.05619 -17.10780 -16.74416 -15.54389 -15.11073 -14.85572 -14.62985 -14.55564 -14.28334 -14.10430 -13.76223 -13.69953 -13.38157 -13.04722 -12.78652 -12.58968 -12.43541 -12.13018 -11.88078 -11.67433 -11.39718 -11.12207 -10.96366 -10.78930 -10.68376 -10.49712 -10.25299 -9.88572 -9.43173 -9.29595 -8.91918 -8.75508 -8.28544 -7.33381 -6.53627 -4.12525 1.71023 2.07602 2.13041 2.98942 3.08657 3.09821 3.13804 3.27387 3.89807 4.29587 4.38622 4.58393 4.74947 5.01458 5.07221 5.14583 5.16479 5.24716 5.40433 5.45387 5.48307 5.67208 5.71412 5.82607 5.94516 5.95105 6.12084 6.18034 6.27661 6.35434 6.47918 6.58587 6.62847 6.80326 6.91119 7.00635 7.15928 7.27937 7.34904 7.71408 7.91132 8.07408 8.65404 8.91760 9.60052 10.63912 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026575 B = 0.002573 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.371408 B =10879.791986 C =11391.887189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.170 4.170 3 C 0.188 3.812 4 H 0.089 0.911 5 C -0.161 4.161 6 N -0.744 5.744 7 C 0.702 3.298 8 O -0.598 6.598 9 N -0.738 5.738 10 C 0.198 3.802 11 C -0.214 4.214 12 C -0.054 4.054 13 C -0.196 4.196 14 C 0.160 3.840 15 O -0.174 6.174 16 C -0.393 4.393 17 H 0.093 0.907 18 C 0.040 3.960 19 N -0.860 5.860 20 Si 0.942 3.058 21 H -0.272 1.272 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.237 4.237 25 C -0.050 4.050 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.114 0.886 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.395 0.605 33 H 0.397 0.603 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.271 0.729 39 H 0.128 0.872 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.074 -6.108 16.594 20.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.189 4.189 3 C 0.083 3.917 4 H 0.107 0.893 5 C -0.219 4.219 6 N -0.399 5.399 7 C 0.402 3.598 8 O -0.477 6.477 9 N -0.393 5.393 10 C 0.075 3.925 11 C -0.215 4.215 12 C -0.072 4.072 13 C -0.215 4.215 14 C 0.106 3.894 15 O -0.076 6.076 16 C -0.469 4.469 17 H 0.111 0.889 18 C -0.165 4.165 19 N -0.494 5.494 20 Si 0.767 3.233 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.191 1.191 24 C -0.257 4.257 25 C -0.069 4.069 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.132 0.868 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.229 0.771 33 H 0.231 0.769 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.131 0.869 37 H 0.136 0.864 38 H 0.081 0.919 39 H 0.146 0.854 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.930 -5.190 16.913 20.795 hybrid contribution -0.246 -0.917 -1.338 1.641 sum -11.175 -6.107 15.575 20.119 Atomic orbital electron populations 1.23990 0.95869 1.02307 0.98180 1.23066 0.96155 0.97985 1.01672 1.19844 0.92917 0.95707 0.83245 0.89257 1.22167 0.99624 1.02674 0.97461 1.45230 1.61438 1.06947 1.26330 1.16032 0.78954 0.83597 0.81241 1.90900 1.60333 1.36451 1.59992 1.45515 1.59534 1.10278 1.23959 1.19824 0.97986 0.82393 0.92281 1.19232 0.93663 1.15210 0.93432 1.20537 0.93070 0.97000 0.96634 1.20218 0.99724 1.11468 0.90096 1.19442 0.90634 0.91817 0.87547 1.83979 1.34561 1.77360 1.11707 1.21354 0.91616 1.51005 0.82973 0.88926 1.25320 0.96158 0.96269 0.98730 1.70036 1.07759 1.44466 1.27126 0.85695 0.79051 0.78659 0.79942 1.19789 1.20188 1.19139 1.21157 0.94207 1.11650 0.98638 1.20651 0.98363 0.96226 0.91642 0.87982 0.88221 0.86849 0.92481 0.91672 0.91762 0.77106 0.76904 0.91754 0.91817 0.86949 0.86390 0.91880 0.85439 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 14.32 29.01 0.42 -0.66 16 2 C -0.17 -1.19 8.96 -36.02 -0.32 -1.51 16 3 C 0.19 1.74 2.93 -69.09 -0.20 1.53 16 4 H 0.09 0.99 7.23 -51.93 -0.38 0.62 16 5 C -0.16 -1.39 9.47 37.15 0.35 -1.04 16 6 N -0.74 -7.50 5.07 -59.82 -0.30 -7.80 16 7 C 0.70 9.56 8.53 -86.93 -0.74 8.82 16 8 O -0.60 -10.40 16.01 5.29 0.08 -10.32 16 9 N -0.74 -9.40 5.55 -66.41 -0.37 -9.77 16 10 C 0.20 2.82 5.80 -5.19 -0.03 2.79 16 11 C -0.21 -3.43 5.25 -104.57 -0.55 -3.98 16 12 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 13 C -0.20 -3.93 9.99 -39.40 -0.39 -4.32 16 14 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 15 O -0.17 -4.80 9.76 0.05 0.00 -4.80 16 16 C -0.39 -10.67 9.49 30.89 0.29 -10.38 16 17 H 0.09 2.32 5.20 -52.49 -0.27 2.04 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -24.63 13.67 55.48 0.76 -23.87 16 20 Si 0.94 19.97 29.55 -169.99 -5.02 14.94 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 C -0.24 -4.90 9.17 -39.40 -0.36 -5.26 16 25 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 26 H 0.10 0.52 8.06 -52.49 -0.42 0.09 16 27 H 0.10 0.67 7.84 -52.49 -0.41 0.26 16 28 H 0.11 0.65 8.06 -52.49 -0.42 0.22 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.40 3.05 8.61 -40.82 -0.35 2.70 16 33 H 0.40 4.44 8.48 -40.82 -0.35 4.09 16 34 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 35 H 0.06 0.93 8.08 -51.93 -0.42 0.52 16 36 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 37 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16 38 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 40 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 348.55 15.07 5.25 5.25 Total: -1.00 -31.62 348.55 -7.67 -39.29 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -5.41 Total: 9.17 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -2.66 Total: -12.10 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.09 Total: -41.44 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.09 Total: -15.11 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.62 -7.67 -39.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756975441.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.746 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds