Wall clock time and date at job start Tue Mar 31 2020 06:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50707 * 120.00037 * 2 1 4 4 H 1.09003 * 109.46727 * 5.00044 * 3 2 1 5 5 C 1.52994 * 109.46993 * 124.99829 * 3 2 1 6 6 N 1.46492 * 109.47385 * 245.00300 * 3 2 1 7 7 C 1.34777 * 120.00434 * 154.99831 * 6 3 2 8 8 O 1.21591 * 119.99393 * 0.02562 * 7 6 3 9 9 N 1.34768 * 120.00297 * 179.97438 * 7 6 3 10 10 C 1.46503 * 120.00179 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47448 * 180.02562 * 10 9 7 12 12 C 1.38299 * 119.93217 * 269.73027 * 11 10 9 13 13 C 1.38093 * 120.06953 * 179.72477 * 12 11 10 14 14 C 1.38883 * 119.92808 * 0.56550 * 13 12 11 15 15 O 1.35754 * 120.06438 * 179.68623 * 14 13 12 16 16 C 1.34826 * 116.99724 * 174.49160 * 15 14 13 17 17 H 1.07998 * 120.00100 * 5.04739 * 16 15 14 18 18 C 1.38654 * 119.99970 * 185.05457 * 16 15 14 19 19 N 1.31557 * 120.00012 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99959 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46896 * 90.00233 * 20 18 16 22 22 H 1.48505 * 109.47024 * 209.99798 * 20 18 16 23 23 H 1.48496 * 109.47185 * 330.00029 * 20 18 16 24 24 C 1.38871 * 119.86468 * 359.70509 * 14 13 12 25 25 C 1.38101 * 119.93230 * 0.02562 * 24 14 13 26 26 H 1.08000 * 119.99632 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.00414 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00027 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47209 * 60.00510 * 5 3 2 30 30 H 1.08995 * 109.47200 * 180.02562 * 5 3 2 31 31 H 1.09004 * 109.47423 * 300.00377 * 5 3 2 32 32 H 0.97007 * 119.99685 * 334.99860 * 6 3 2 33 33 H 0.97000 * 120.00448 * 0.02562 * 9 7 6 34 34 H 1.09002 * 109.46848 * 59.99850 * 10 9 7 35 35 H 1.09001 * 109.46885 * 300.00464 * 10 9 7 36 36 H 1.08005 * 119.96050 * 359.97425 * 12 11 10 37 37 H 1.07999 * 120.03730 * 180.26989 * 13 12 11 38 38 H 0.97002 * 120.00021 * 179.97438 * 19 18 16 39 39 H 1.08002 * 120.03853 * 179.97438 * 24 14 13 40 40 H 1.07997 * 119.96732 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3585 2.1317 0.0896 5 6 3.0350 1.3331 1.1816 6 7 2.8131 1.4363 -1.2517 7 6 3.1404 2.6583 -1.7165 8 8 2.8139 3.6520 -1.0964 9 7 3.8305 2.7789 -2.8678 10 6 4.1867 4.1073 -3.3727 11 6 4.9490 3.9658 -4.6650 12 6 6.3280 3.8631 -4.6451 13 6 7.0288 3.7277 -5.8272 14 6 6.3483 3.7064 -7.0377 15 8 7.0350 3.5798 -8.2019 16 6 6.3084 3.4514 -9.3303 17 1 5.2323 3.5341 -9.2919 18 6 6.9427 3.2131 -10.5400 19 7 8.2536 3.1127 -10.5868 20 14 5.9358 3.0345 -12.1032 21 1 5.7668 4.3663 -12.7380 22 1 6.6380 2.1238 -13.0429 23 1 4.6024 2.4713 -11.7716 24 6 4.9640 3.8154 -7.0547 25 6 4.2683 3.9450 -5.8688 26 1 -0.5399 -0.9353 -0.0004 27 1 -0.5401 0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 3.7400 0.5066 1.0920 30 1 3.5797 2.2772 1.1819 31 1 2.4772 1.2356 2.1130 32 1 3.0740 0.6435 -1.7462 33 1 4.0914 1.9862 -3.3623 34 1 4.8077 4.6204 -2.6384 35 1 3.2790 4.6847 -3.5479 36 1 6.8570 3.8849 -3.7037 37 1 8.1054 3.6432 -5.8108 38 1 8.6973 2.9456 -11.4330 39 1 4.4320 3.7996 -7.9945 40 1 3.1918 4.0302 -5.8814 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756975441.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:51 Heat of formation + Delta-G solvation = -38.963003 kcal Electronic energy + Delta-G solvation = -21604.420080 eV Core-core repulsion = 18191.460124 eV Total energy + Delta-G solvation = -3412.959956 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.19497 -40.69986 -38.61671 -37.43142 -35.56625 -34.29832 -33.63770 -31.83854 -31.43507 -30.22896 -27.64683 -26.24284 -24.20101 -23.64005 -22.16333 -21.76778 -21.10833 -19.88097 -19.29133 -18.78758 -17.71515 -16.71300 -16.43739 -16.20945 -16.02438 -15.91010 -15.52050 -15.32633 -15.06062 -14.88908 -14.59140 -14.37482 -14.27061 -13.74894 -13.53572 -13.20225 -13.08786 -13.01930 -12.59754 -12.54698 -12.36162 -12.21857 -12.11403 -11.75184 -11.38015 -11.19815 -10.80891 -10.49168 -10.32214 -9.81897 -9.72779 -9.01586 -8.48203 -6.16416 0.52575 0.58232 1.17181 1.36168 1.44497 1.53224 2.03680 2.17375 2.20784 2.81919 3.14509 3.48710 3.51139 3.77461 3.89415 4.04038 4.15280 4.18089 4.37164 4.47818 4.53251 4.57436 4.72208 4.78390 4.81614 4.92629 5.04499 5.06938 5.14785 5.25554 5.27164 5.48853 5.53333 5.55133 5.66875 5.69370 5.76318 5.84918 6.01638 6.06457 6.16840 6.96665 7.13598 7.62354 7.75944 8.74616 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026575 B = 0.002573 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.371408 B =10879.791986 C =11391.887189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.173 4.173 3 C 0.185 3.815 4 H 0.067 0.933 5 C -0.156 4.156 6 N -0.730 5.730 7 C 0.700 3.300 8 O -0.637 6.637 9 N -0.731 5.731 10 C 0.204 3.796 11 C -0.181 4.181 12 C -0.043 4.043 13 C -0.204 4.204 14 C 0.123 3.877 15 O -0.229 6.229 16 C -0.414 4.414 17 H 0.104 0.896 18 C -0.022 4.022 19 N -0.919 5.919 20 Si 1.018 2.982 21 H -0.264 1.264 22 H -0.272 1.272 23 H -0.252 1.252 24 C -0.243 4.243 25 C -0.045 4.045 26 H 0.121 0.879 27 H 0.093 0.907 28 H 0.133 0.867 29 H 0.069 0.931 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.409 0.591 33 H 0.407 0.593 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.147 0.853 37 H 0.115 0.885 38 H 0.273 0.727 39 H 0.120 0.880 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.384 -7.180 18.349 23.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.191 4.191 3 C 0.080 3.920 4 H 0.085 0.915 5 C -0.214 4.214 6 N -0.386 5.386 7 C 0.400 3.600 8 O -0.519 6.519 9 N -0.387 5.387 10 C 0.081 3.919 11 C -0.182 4.182 12 C -0.061 4.061 13 C -0.224 4.224 14 C 0.071 3.929 15 O -0.135 6.135 16 C -0.489 4.489 17 H 0.121 0.879 18 C -0.220 4.220 19 N -0.557 5.557 20 Si 0.837 3.163 21 H -0.189 1.189 22 H -0.197 1.197 23 H -0.175 1.175 24 C -0.263 4.263 25 C -0.063 4.063 26 H 0.139 0.861 27 H 0.111 0.889 28 H 0.150 0.850 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.245 0.755 33 H 0.243 0.757 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.165 0.835 37 H 0.133 0.867 38 H 0.082 0.918 39 H 0.138 0.862 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.271 -6.300 18.722 23.797 hybrid contribution 0.325 -0.552 -1.466 1.600 sum -12.946 -6.852 17.255 22.634 Atomic orbital electron populations 1.24162 0.95868 1.02937 0.97043 1.23012 0.96195 0.97328 1.02610 1.19914 0.92754 0.96354 0.82953 0.91508 1.22113 0.99654 1.01728 0.97908 1.45151 1.60550 1.06345 1.26506 1.16141 0.78774 0.84036 0.81050 1.90881 1.61860 1.38067 1.61093 1.45250 1.59453 1.10039 1.23930 1.19702 0.97886 0.83290 0.91060 1.19489 0.93478 1.11254 0.93999 1.20874 0.93468 0.95082 0.96671 1.20449 1.00026 1.11575 0.90319 1.19995 0.92056 0.93395 0.87406 1.83949 1.36026 1.80577 1.12938 1.21831 0.92308 1.51231 0.83578 0.87903 1.26582 0.97374 0.95753 1.02253 1.70179 1.09886 1.47516 1.28108 0.84594 0.77740 0.78944 0.75006 1.18935 1.19667 1.17538 1.21238 0.93369 1.11863 0.99792 1.20936 0.99838 0.94892 0.90653 0.86126 0.88897 0.84953 0.91187 0.94214 0.90419 0.75450 0.75716 0.91269 0.91560 0.83542 0.86657 0.91800 0.86178 0.84392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 14.32 67.78 0.97 -0.72 16 2 C -0.17 -1.93 8.96 25.65 0.23 -1.70 16 3 C 0.18 3.07 2.93 44.25 0.13 3.20 16 4 H 0.07 1.43 7.23 -2.39 -0.02 1.41 16 5 C -0.16 -2.42 9.47 71.98 0.68 -1.73 16 6 N -0.73 -12.92 5.07 -461.43 -2.34 -15.26 16 7 C 0.70 17.44 8.53 179.06 1.53 18.97 16 8 O -0.64 -21.22 16.01 -4.00 -0.06 -21.28 16 9 N -0.73 -16.26 5.55 -482.29 -2.68 -18.94 16 10 C 0.20 5.10 5.80 85.63 0.50 5.60 16 11 C -0.18 -5.22 5.25 -19.83 -0.10 -5.32 16 12 C -0.04 -1.31 9.69 22.25 0.22 -1.10 16 13 C -0.20 -8.18 9.99 22.39 0.22 -7.96 16 14 C 0.12 5.81 6.65 22.58 0.15 5.96 16 15 O -0.23 -13.36 9.76 -22.74 -0.22 -13.58 16 16 C -0.41 -23.40 9.49 67.92 0.64 -22.76 16 17 H 0.10 5.31 5.20 -2.91 -0.02 5.30 16 18 C -0.02 -1.21 5.49 84.83 0.47 -0.75 16 19 N -0.92 -55.40 13.67 21.61 0.30 -55.10 16 20 Si 1.02 41.80 29.55 68.60 2.03 43.83 16 21 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 22 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 23 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 24 C -0.24 -9.98 9.17 22.39 0.21 -9.78 16 25 C -0.04 -1.43 9.69 22.25 0.22 -1.21 16 26 H 0.12 0.83 8.06 -2.91 -0.02 0.81 16 27 H 0.09 1.09 7.84 -2.91 -0.02 1.07 16 28 H 0.13 1.01 8.06 -2.91 -0.02 0.99 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.41 5.02 8.61 -92.70 -0.80 4.22 16 33 H 0.41 7.61 8.48 -92.71 -0.79 6.82 16 34 H 0.07 1.75 8.08 -2.39 -0.02 1.73 16 35 H 0.07 1.70 8.08 -2.39 -0.02 1.68 16 36 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 37 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 38 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 39 H 0.12 5.05 5.64 -2.91 -0.02 5.03 16 40 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -73.01 348.55 2.55 -70.46 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: -0.52 Total: 29.17 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: 6.05 Total: -19.31 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -4.72 Total: -89.30 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -0.29 Total: -34.86 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -73.01 2.55 -70.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756975441.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.497 kcal (2) G-P(sol) polarization free energy of solvation -73.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds