Wall clock time and date at job start Tue Mar 31 2020 06:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50700 * 119.99592 * 2 1 4 4 H 1.09000 * 109.47588 * 0.02562 * 3 2 1 5 5 C 1.53005 * 109.47110 * 239.99903 * 3 2 1 6 6 N 1.46504 * 109.47076 * 120.00277 * 3 2 1 7 7 C 1.34780 * 120.00101 * 205.00170 * 6 3 2 8 8 O 1.21585 * 119.99713 * 359.97438 * 7 6 3 9 9 N 1.34775 * 120.00087 * 179.97438 * 7 6 3 10 10 C 1.46498 * 119.99904 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.47300 * 179.97438 * 10 9 7 12 12 C 1.38300 * 119.93634 * 269.73138 * 11 10 9 13 13 C 1.38103 * 120.07235 * 179.72038 * 12 11 10 14 14 C 1.38881 * 119.92859 * 0.56979 * 13 12 11 15 15 O 1.35743 * 120.07033 * 179.67702 * 14 13 12 16 16 C 1.34829 * 117.00323 * 174.48588 * 15 14 13 17 17 H 1.08000 * 119.99772 * 5.06302 * 16 15 14 18 18 C 1.38655 * 120.00285 * 185.06067 * 16 15 14 19 19 N 1.31556 * 119.99986 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99817 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47223 * 90.00094 * 20 18 16 22 22 H 1.48499 * 109.47046 * 209.99924 * 20 18 16 23 23 H 1.48492 * 109.47326 * 329.99691 * 20 18 16 24 24 C 1.38884 * 119.86119 * 359.70391 * 14 13 12 25 25 C 1.38100 * 119.93123 * 0.02562 * 24 14 13 26 26 H 1.07999 * 120.00548 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.99674 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.00548 * 179.97438 * 2 1 3 29 29 H 1.09008 * 109.47039 * 180.02562 * 5 3 2 30 30 H 1.08997 * 109.47090 * 299.99851 * 5 3 2 31 31 H 1.08999 * 109.46945 * 60.00132 * 5 3 2 32 32 H 0.96999 * 120.00481 * 24.99214 * 6 3 2 33 33 H 0.96993 * 120.00031 * 359.97438 * 9 7 6 34 34 H 1.08999 * 109.47244 * 60.00112 * 10 9 7 35 35 H 1.09004 * 109.47345 * 300.00174 * 10 9 7 36 36 H 1.08004 * 119.96372 * 359.97187 * 12 11 10 37 37 H 1.07998 * 120.03412 * 180.26808 * 13 12 11 38 38 H 0.97002 * 119.99992 * 180.02562 * 19 18 16 39 39 H 1.07996 * 120.03050 * 179.97438 * 24 14 13 40 40 H 1.08003 * 119.96708 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3550 2.1336 0.0005 5 6 2.9430 1.3863 -1.2493 6 7 2.9057 1.3828 1.1962 7 6 3.2690 2.5840 1.6877 8 8 2.8982 3.6031 1.1381 9 7 4.0435 2.6554 2.7884 10 6 4.4389 3.9610 3.3224 11 6 5.2953 3.7647 4.5467 12 6 4.7072 3.6958 5.7965 13 6 5.4887 3.5101 6.9198 14 6 6.8679 3.4044 6.7947 15 8 7.6394 3.2284 7.8976 16 6 8.9561 3.0192 7.6965 17 1 9.3662 3.0786 6.6992 18 6 9.7837 2.7277 8.7701 19 7 9.2841 2.6549 9.9850 20 14 11.6080 2.4385 8.4915 21 1 12.3359 3.7283 8.6002 22 1 12.1212 1.4928 9.5150 23 1 11.8172 1.8646 7.1381 24 6 7.4560 3.4796 5.5388 25 6 6.6684 3.6598 4.4187 26 1 -0.5401 0.9352 -0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 1.8500 -0.9352 0.0004 29 1 3.4883 2.3301 -1.2490 30 1 3.6514 0.5578 -1.2492 31 1 2.3163 1.3285 -2.1392 32 1 3.2018 0.5697 1.6345 33 1 4.3390 1.8424 3.2271 34 1 3.5480 4.5291 3.5900 35 1 5.0043 4.5066 2.5668 36 1 3.6351 3.7832 5.8937 37 1 5.0284 3.4521 7.8951 38 1 9.8632 2.4513 10.7361 39 1 8.5282 3.3982 5.4383 40 1 7.1252 3.7180 3.4418 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756975444.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:54 Heat of formation + Delta-G solvation = -17.531445 kcal Electronic energy + Delta-G solvation = -21598.186308 eV Core-core repulsion = 18186.155695 eV Total energy + Delta-G solvation = -3412.030614 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.08246 -39.10617 -37.15384 -36.44221 -34.30209 -32.91319 -32.34088 -30.36010 -30.22507 -29.19171 -25.90178 -24.80352 -23.39253 -22.05321 -20.77818 -20.64824 -20.42068 -18.30003 -18.05611 -17.09997 -16.78211 -15.48547 -15.16574 -14.87440 -14.65025 -14.50153 -14.24599 -14.11146 -13.73733 -13.70506 -13.40911 -13.03210 -12.78809 -12.64035 -12.46430 -12.09263 -11.91517 -11.67605 -11.39666 -11.11312 -10.96486 -10.79079 -10.68343 -10.49790 -10.23697 -9.89029 -9.43162 -9.29484 -8.91968 -8.75560 -8.28516 -7.33359 -6.53671 -4.12567 1.72134 2.07361 2.13042 2.97758 3.08589 3.09599 3.13721 3.27355 3.89746 4.29263 4.38672 4.58287 4.74892 5.01430 5.07344 5.14483 5.16445 5.24748 5.40272 5.45354 5.47919 5.67139 5.71250 5.82579 5.94642 5.95067 6.12086 6.17994 6.26101 6.35449 6.48531 6.58590 6.62848 6.80348 6.91021 7.00536 7.15923 7.27915 7.34878 7.71411 7.91096 8.07291 8.65308 8.91706 9.60044 10.63864 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027897 B = 0.002519 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.435371 B =11111.474100 C =11312.762333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.169 4.169 3 C 0.188 3.812 4 H 0.090 0.910 5 C -0.161 4.161 6 N -0.744 5.744 7 C 0.702 3.298 8 O -0.598 6.598 9 N -0.738 5.738 10 C 0.198 3.802 11 C -0.214 4.214 12 C -0.054 4.054 13 C -0.196 4.196 14 C 0.160 3.840 15 O -0.173 6.173 16 C -0.393 4.393 17 H 0.093 0.907 18 C 0.040 3.960 19 N -0.860 5.860 20 Si 0.942 3.058 21 H -0.272 1.272 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.237 4.237 25 C -0.050 4.050 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.113 0.887 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.395 0.605 33 H 0.397 0.603 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.271 0.729 39 H 0.128 0.872 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.407 -5.399 -16.620 20.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.188 4.188 3 C 0.083 3.917 4 H 0.108 0.892 5 C -0.219 4.219 6 N -0.400 5.400 7 C 0.402 3.598 8 O -0.477 6.477 9 N -0.393 5.393 10 C 0.075 3.925 11 C -0.215 4.215 12 C -0.072 4.072 13 C -0.215 4.215 14 C 0.106 3.894 15 O -0.076 6.076 16 C -0.469 4.469 17 H 0.111 0.889 18 C -0.165 4.165 19 N -0.494 5.494 20 Si 0.767 3.233 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.191 1.191 24 C -0.257 4.257 25 C -0.069 4.069 26 H 0.118 0.882 27 H 0.120 0.880 28 H 0.131 0.869 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.229 0.771 33 H 0.231 0.769 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.081 0.919 39 H 0.146 0.854 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.692 -4.463 -16.623 20.808 hybrid contribution 1.295 -0.998 0.302 1.663 sum -10.397 -5.462 -16.321 20.107 Atomic orbital electron populations 1.23970 0.95823 1.02310 0.98403 1.23056 0.96179 0.97984 1.01548 1.19853 0.91774 0.95840 0.84246 0.89232 1.22167 1.00118 1.02674 0.96956 1.45226 1.56360 1.07079 1.31303 1.16030 0.79271 0.83786 0.80733 1.90898 1.60693 1.33872 1.62201 1.45514 1.54416 1.10326 1.29031 1.19821 0.97055 0.82973 0.92633 1.19231 0.93665 1.15080 0.93563 1.20541 0.98290 0.96987 0.91421 1.20219 0.91073 1.11338 0.98877 1.19443 0.91034 0.91828 0.87132 1.83976 1.20143 1.76291 1.27196 1.21354 0.80120 1.49700 0.95767 0.88926 1.25320 1.00471 0.96308 0.94387 1.70036 1.36353 1.44225 0.98764 0.85692 0.80396 0.78658 0.78589 1.19789 1.20189 1.19148 1.21160 1.00669 1.11571 0.92261 1.20651 0.92698 0.96160 0.97376 0.88213 0.87976 0.86859 0.91659 0.92481 0.91756 0.77107 0.76905 0.91769 0.91800 0.86951 0.86391 0.91880 0.85438 0.87393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 14.32 29.02 0.42 -0.66 16 2 C -0.17 -1.18 8.96 -36.02 -0.32 -1.50 16 3 C 0.19 1.74 2.94 -69.08 -0.20 1.53 16 4 H 0.09 0.99 7.22 -51.93 -0.37 0.62 16 5 C -0.16 -1.40 9.47 37.16 0.35 -1.05 16 6 N -0.74 -7.49 5.07 -59.81 -0.30 -7.80 16 7 C 0.70 9.56 8.53 -86.92 -0.74 8.82 16 8 O -0.60 -10.40 16.01 5.29 0.08 -10.31 16 9 N -0.74 -9.40 5.55 -66.42 -0.37 -9.77 16 10 C 0.20 2.82 5.80 -5.20 -0.03 2.79 16 11 C -0.21 -3.43 5.25 -104.58 -0.55 -3.98 16 12 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 13 C -0.20 -3.93 9.99 -39.39 -0.39 -4.32 16 14 C 0.16 3.71 6.65 -39.10 -0.26 3.45 16 15 O -0.17 -4.80 9.76 0.07 0.00 -4.80 16 16 C -0.39 -10.67 9.49 30.89 0.29 -10.37 16 17 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -24.62 13.67 55.48 0.76 -23.87 16 20 Si 0.94 19.97 29.55 -169.99 -5.02 14.95 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 C -0.24 -4.90 9.17 -39.39 -0.36 -5.26 16 25 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 26 H 0.10 0.65 7.83 -52.49 -0.41 0.24 16 27 H 0.10 0.51 8.06 -52.48 -0.42 0.09 16 28 H 0.11 0.65 8.06 -52.49 -0.42 0.22 16 29 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.40 3.04 8.61 -40.82 -0.35 2.69 16 33 H 0.40 4.43 8.48 -40.82 -0.35 4.08 16 34 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 35 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 36 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 37 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 38 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.13 2.65 5.64 -52.49 -0.30 2.35 16 40 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 348.54 15.07 5.25 5.25 Total: -1.00 -31.62 348.54 -7.67 -39.30 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -5.41 Total: 9.15 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -2.66 Total: -12.10 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 0.09 Total: -41.43 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.09 Total: -15.11 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.62 -7.67 -39.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756975444.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.764 kcal (2) G-P(sol) polarization free energy of solvation -31.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds