Wall clock time and date at job start Tue Mar 31 2020 06:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50700 * 119.99592 * 2 1 4 4 H 1.09000 * 109.47588 * 0.02562 * 3 2 1 5 5 C 1.53005 * 109.47110 * 239.99903 * 3 2 1 6 6 N 1.46504 * 109.47076 * 120.00277 * 3 2 1 7 7 C 1.34780 * 120.00101 * 205.00170 * 6 3 2 8 8 O 1.21585 * 119.99713 * 359.97438 * 7 6 3 9 9 N 1.34775 * 120.00087 * 179.97438 * 7 6 3 10 10 C 1.46498 * 119.99904 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.47300 * 179.97438 * 10 9 7 12 12 C 1.38300 * 119.93634 * 269.73138 * 11 10 9 13 13 C 1.38103 * 120.07235 * 179.72038 * 12 11 10 14 14 C 1.38881 * 119.92859 * 0.56979 * 13 12 11 15 15 O 1.35743 * 120.07033 * 179.67702 * 14 13 12 16 16 C 1.34829 * 117.00323 * 174.48588 * 15 14 13 17 17 H 1.08000 * 119.99772 * 5.06302 * 16 15 14 18 18 C 1.38655 * 120.00285 * 185.06067 * 16 15 14 19 19 N 1.31556 * 119.99986 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99817 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47223 * 90.00094 * 20 18 16 22 22 H 1.48499 * 109.47046 * 209.99924 * 20 18 16 23 23 H 1.48492 * 109.47326 * 329.99691 * 20 18 16 24 24 C 1.38884 * 119.86119 * 359.70391 * 14 13 12 25 25 C 1.38100 * 119.93123 * 0.02562 * 24 14 13 26 26 H 1.07999 * 120.00548 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.99674 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.00548 * 179.97438 * 2 1 3 29 29 H 1.09008 * 109.47039 * 180.02562 * 5 3 2 30 30 H 1.08997 * 109.47090 * 299.99851 * 5 3 2 31 31 H 1.08999 * 109.46945 * 60.00132 * 5 3 2 32 32 H 0.96999 * 120.00481 * 24.99214 * 6 3 2 33 33 H 0.96993 * 120.00031 * 359.97438 * 9 7 6 34 34 H 1.08999 * 109.47244 * 60.00112 * 10 9 7 35 35 H 1.09004 * 109.47345 * 300.00174 * 10 9 7 36 36 H 1.08004 * 119.96372 * 359.97187 * 12 11 10 37 37 H 1.07998 * 120.03412 * 180.26808 * 13 12 11 38 38 H 0.97002 * 119.99992 * 180.02562 * 19 18 16 39 39 H 1.07996 * 120.03050 * 179.97438 * 24 14 13 40 40 H 1.08003 * 119.96708 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3550 2.1336 0.0005 5 6 2.9430 1.3863 -1.2493 6 7 2.9057 1.3828 1.1962 7 6 3.2690 2.5840 1.6877 8 8 2.8982 3.6031 1.1381 9 7 4.0435 2.6554 2.7884 10 6 4.4389 3.9610 3.3224 11 6 5.2953 3.7647 4.5467 12 6 4.7072 3.6958 5.7965 13 6 5.4887 3.5101 6.9198 14 6 6.8679 3.4044 6.7947 15 8 7.6394 3.2284 7.8976 16 6 8.9561 3.0192 7.6965 17 1 9.3662 3.0786 6.6992 18 6 9.7837 2.7277 8.7701 19 7 9.2841 2.6549 9.9850 20 14 11.6080 2.4385 8.4915 21 1 12.3359 3.7283 8.6002 22 1 12.1212 1.4928 9.5150 23 1 11.8172 1.8646 7.1381 24 6 7.4560 3.4796 5.5388 25 6 6.6684 3.6598 4.4187 26 1 -0.5401 0.9352 -0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 1.8500 -0.9352 0.0004 29 1 3.4883 2.3301 -1.2490 30 1 3.6514 0.5578 -1.2492 31 1 2.3163 1.3285 -2.1392 32 1 3.2018 0.5697 1.6345 33 1 4.3390 1.8424 3.2271 34 1 3.5480 4.5291 3.5900 35 1 5.0043 4.5066 2.5668 36 1 3.6351 3.7832 5.8937 37 1 5.0284 3.4521 7.8951 38 1 9.8632 2.4513 10.7361 39 1 8.5282 3.3982 5.4383 40 1 7.1252 3.7180 3.4418 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756975444.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:54 Heat of formation + Delta-G solvation = -38.951023 kcal Electronic energy + Delta-G solvation = -21599.115131 eV Core-core repulsion = 18186.155695 eV Total energy + Delta-G solvation = -3412.959436 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.19533 -40.69982 -38.61675 -37.43296 -35.56692 -34.29914 -33.65089 -31.83775 -31.42948 -30.21182 -27.64700 -26.24653 -24.21938 -23.64016 -22.16262 -21.76837 -21.10222 -19.88049 -19.28121 -18.78466 -17.73851 -16.69161 -16.40593 -16.27494 -15.98729 -15.93998 -15.52937 -15.34630 -14.93003 -14.91543 -14.62013 -14.36961 -14.25559 -13.78014 -13.54475 -13.20853 -13.10793 -13.02199 -12.61390 -12.54798 -12.36050 -12.21891 -12.11448 -11.74187 -11.37521 -11.19758 -10.80868 -10.49545 -10.30996 -9.81835 -9.72706 -9.01544 -8.48208 -6.16408 0.52657 0.58245 1.18729 1.36149 1.44475 1.53179 2.02253 2.17331 2.20828 2.81804 3.14428 3.48676 3.50800 3.77703 3.89446 4.04083 4.15683 4.18072 4.36914 4.47751 4.53132 4.57468 4.72141 4.78154 4.81623 4.92290 5.04503 5.07029 5.14783 5.25224 5.27207 5.48727 5.53067 5.54770 5.67060 5.69380 5.76345 5.85425 6.01643 6.06421 6.16860 6.96646 7.13577 7.62323 7.75977 8.74599 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027897 B = 0.002519 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.435371 B =11111.474100 C =11312.762333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.173 4.173 3 C 0.185 3.815 4 H 0.067 0.933 5 C -0.156 4.156 6 N -0.730 5.730 7 C 0.700 3.300 8 O -0.637 6.637 9 N -0.731 5.731 10 C 0.204 3.796 11 C -0.181 4.181 12 C -0.043 4.043 13 C -0.204 4.204 14 C 0.123 3.877 15 O -0.229 6.229 16 C -0.413 4.413 17 H 0.104 0.896 18 C -0.022 4.022 19 N -0.919 5.919 20 Si 1.018 2.982 21 H -0.264 1.264 22 H -0.272 1.272 23 H -0.252 1.252 24 C -0.243 4.243 25 C -0.045 4.045 26 H 0.094 0.906 27 H 0.121 0.879 28 H 0.132 0.868 29 H 0.039 0.961 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.410 0.590 33 H 0.407 0.593 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.147 0.853 37 H 0.115 0.885 38 H 0.273 0.727 39 H 0.121 0.879 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.233 -6.412 -19.379 23.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.191 4.191 3 C 0.080 3.920 4 H 0.086 0.914 5 C -0.214 4.214 6 N -0.386 5.386 7 C 0.400 3.600 8 O -0.519 6.519 9 N -0.387 5.387 10 C 0.081 3.919 11 C -0.182 4.182 12 C -0.061 4.061 13 C -0.224 4.224 14 C 0.072 3.928 15 O -0.135 6.135 16 C -0.489 4.489 17 H 0.121 0.879 18 C -0.220 4.220 19 N -0.557 5.557 20 Si 0.837 3.163 21 H -0.189 1.189 22 H -0.197 1.197 23 H -0.175 1.175 24 C -0.263 4.263 25 C -0.063 4.063 26 H 0.112 0.888 27 H 0.139 0.861 28 H 0.150 0.850 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.246 0.754 33 H 0.243 0.757 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.164 0.836 37 H 0.133 0.867 38 H 0.082 0.918 39 H 0.138 0.862 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.557 -5.512 -19.433 23.785 hybrid contribution 1.205 -0.631 0.873 1.616 sum -11.352 -6.143 -18.560 22.607 Atomic orbital electron populations 1.24148 0.95801 1.02983 0.97177 1.22999 0.96241 0.97308 1.02576 1.19919 0.91514 0.96525 0.83997 0.91446 1.22114 1.00263 1.01701 0.97325 1.45145 1.55606 1.06554 1.31267 1.16139 0.79100 0.84170 0.80590 1.90880 1.62155 1.35526 1.63327 1.45249 1.54327 1.10131 1.28966 1.19700 0.96841 0.83823 0.91574 1.19488 0.93444 1.11147 0.94140 1.20876 0.99708 0.95097 0.90430 1.20448 0.90308 1.11454 1.00160 1.19996 0.92071 0.93373 0.87410 1.83947 1.20657 1.79470 1.29418 1.21831 0.80634 1.49926 0.96541 0.87898 1.26584 1.05642 0.95882 0.93879 1.70180 1.38348 1.47234 0.99917 0.84591 0.73732 0.78835 0.79114 1.18933 1.19671 1.17547 1.21242 1.00808 1.11797 0.92422 1.20938 0.93021 0.94800 0.97549 0.88788 0.86134 0.85012 0.94214 0.91237 0.90416 0.75441 0.75715 0.91304 0.91522 0.83566 0.86668 0.91802 0.86168 0.84368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 14.32 67.79 0.97 -0.71 16 2 C -0.17 -1.93 8.96 25.65 0.23 -1.70 16 3 C 0.19 3.07 2.94 44.25 0.13 3.20 16 4 H 0.07 1.44 7.22 -2.39 -0.02 1.42 16 5 C -0.16 -2.44 9.47 71.98 0.68 -1.75 16 6 N -0.73 -12.91 5.07 -461.39 -2.34 -15.25 16 7 C 0.70 17.44 8.53 179.05 1.53 18.96 16 8 O -0.64 -21.20 16.01 -3.98 -0.06 -21.27 16 9 N -0.73 -16.25 5.55 -482.31 -2.68 -18.93 16 10 C 0.20 5.10 5.80 85.63 0.50 5.60 16 11 C -0.18 -5.22 5.25 -19.83 -0.10 -5.32 16 12 C -0.04 -1.32 9.69 22.25 0.22 -1.11 16 13 C -0.20 -8.19 9.99 22.39 0.22 -7.96 16 14 C 0.12 5.81 6.65 22.58 0.15 5.96 16 15 O -0.23 -13.36 9.76 -22.66 -0.22 -13.58 16 16 C -0.41 -23.39 9.49 67.92 0.64 -22.74 16 17 H 0.10 5.31 5.20 -2.91 -0.02 5.30 16 18 C -0.02 -1.23 5.49 84.83 0.47 -0.76 16 19 N -0.92 -55.38 13.67 21.61 0.30 -55.09 16 20 Si 1.02 41.81 29.55 68.60 2.03 43.83 16 21 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 22 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 23 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 24 C -0.24 -9.98 9.17 22.39 0.21 -9.78 16 25 C -0.04 -1.42 9.69 22.25 0.22 -1.21 16 26 H 0.09 1.07 7.83 -2.91 -0.02 1.05 16 27 H 0.12 0.81 8.06 -2.91 -0.02 0.79 16 28 H 0.13 1.02 8.06 -2.91 -0.02 0.99 16 29 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.41 5.00 8.61 -92.71 -0.80 4.20 16 33 H 0.41 7.60 8.48 -92.71 -0.79 6.81 16 34 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 35 H 0.07 1.71 8.08 -2.38 -0.02 1.69 16 36 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 37 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 38 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 39 H 0.12 5.04 5.64 -2.91 -0.02 5.03 16 40 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -73.01 348.54 2.55 -70.45 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: -0.52 Total: 29.13 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: 6.05 Total: -19.31 kcal Atomic # 7 Polarization: -84.54 SS G_CDS: -4.72 Total: -89.26 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -0.28 Total: -34.84 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Total: -73.01 2.55 -70.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756975444.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.504 kcal (2) G-P(sol) polarization free energy of solvation -73.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds