Wall clock time and date at job start Tue Mar 31 2020 06:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35652 * 117.00064 * 2 1 4 4 C 1.38698 * 120.15150 * 0.02562 * 3 2 1 5 5 C 1.38065 * 120.08908 * 179.97438 * 4 3 2 6 6 C 1.38545 * 120.39213 * 0.02562 * 5 4 3 7 7 C 1.37785 * 120.30097 * 359.97438 * 6 5 4 8 8 C 1.39722 * 119.90682 * 359.97438 * 7 6 5 9 9 C 1.47501 * 120.18969 * 180.02562 * 8 7 6 10 10 O 1.21614 * 119.99383 * 179.97438 * 9 8 7 11 11 N 1.34772 * 120.00119 * 0.02562 * 9 8 7 12 12 N 1.40102 * 119.99614 * 179.97438 * 11 9 8 13 13 C 1.28018 * 119.99657 * 179.97438 * 12 11 9 14 14 C 1.50706 * 119.99745 * 179.97438 * 13 12 11 15 15 H 1.08999 * 109.47031 * 0.02562 * 14 13 12 16 16 C 1.52999 * 109.46778 * 120.00144 * 14 13 12 17 17 C 1.52995 * 109.47257 * 240.00102 * 14 13 12 18 18 C 1.50698 * 109.47421 * 175.00123 * 17 14 13 19 19 H 1.07998 * 119.99681 * 0.02562 * 18 17 14 20 20 C 1.37869 * 120.00012 * 179.97438 * 18 17 14 21 21 N 1.31510 * 120.00527 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00007 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46947 * 60.00052 * 22 20 18 24 24 H 1.48496 * 109.47635 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47066 * 300.00473 * 22 20 18 26 26 H 1.08993 * 109.47135 * 299.99995 * 1 2 3 27 27 H 1.08997 * 109.46910 * 60.00096 * 1 2 3 28 28 H 1.09002 * 109.46863 * 179.97438 * 1 2 3 29 29 H 1.08005 * 119.95737 * 0.25349 * 4 3 2 30 30 H 1.08005 * 119.80345 * 179.97438 * 5 4 3 31 31 H 1.08002 * 119.84930 * 179.97438 * 6 5 4 32 32 H 1.08005 * 120.04369 * 180.02562 * 7 6 5 33 33 H 0.96993 * 120.00492 * 359.97438 * 11 9 8 34 34 H 1.07994 * 120.00375 * 0.02562 * 13 12 11 35 35 H 1.08999 * 109.47338 * 60.00184 * 16 14 13 36 36 H 1.09000 * 109.46745 * 179.97438 * 16 14 13 37 37 H 1.08994 * 109.47588 * 299.99908 * 16 14 13 38 38 H 1.09005 * 109.46947 * 295.00738 * 17 14 13 39 39 H 1.09000 * 109.47201 * 54.99835 * 17 14 13 40 40 H 0.97003 * 120.00746 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2926 2.3739 0.0005 5 6 1.9207 3.6034 0.0011 6 6 3.3039 3.6838 0.0005 7 6 4.0669 2.5366 0.0000 8 6 3.4443 1.2858 0.0005 9 6 4.2551 0.0536 0.0005 10 8 3.7095 -1.0333 0.0015 11 7 5.6006 0.1323 0.0006 12 7 6.3706 -1.0382 0.0011 13 6 7.6486 -0.9634 0.0006 14 6 8.4770 -2.2224 0.0018 15 1 7.8182 -3.0908 0.0025 16 6 9.3594 -2.2534 -1.2477 17 6 9.3602 -2.2507 1.2507 18 6 10.0969 -3.5637 1.3155 19 1 9.9502 -4.3038 0.5428 20 6 10.9590 -3.8196 2.3605 21 7 11.1381 -2.9182 3.3012 22 14 11.8717 -5.4475 2.4412 23 1 12.7192 -5.6003 1.2313 24 1 12.7290 -5.4749 3.6533 25 1 10.8920 -6.5617 2.5031 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2139 2.3194 0.0051 30 1 1.3304 4.5078 0.0011 31 1 3.7861 4.6502 0.0005 32 1 5.1449 2.6041 0.0000 33 1 6.0357 0.9991 0.0002 34 1 8.1331 0.0017 0.0002 35 1 10.0182 -1.3850 -1.2489 36 1 9.9588 -3.1637 -1.2466 37 1 8.7303 -2.2333 -2.1375 38 1 10.0790 -1.4324 1.2060 39 1 8.7377 -2.1391 2.1385 40 1 11.7449 -3.0980 4.0363 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766021020.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:01 Heat of formation + Delta-G solvation = -12.840834 kcal Electronic energy + Delta-G solvation = -21742.760425 eV Core-core repulsion = 18330.933211 eV Total energy + Delta-G solvation = -3411.827213 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.73233 -38.93129 -37.57314 -36.80322 -34.68147 -32.59683 -31.85967 -30.46987 -30.18195 -27.54528 -26.94257 -24.73219 -23.75332 -22.47608 -21.68751 -20.53120 -19.36532 -18.48242 -17.43501 -16.98431 -16.29178 -16.05241 -16.03402 -15.28330 -15.01485 -14.77578 -14.49860 -14.05752 -13.72346 -13.32454 -13.09068 -13.02244 -12.61926 -12.53253 -11.98344 -11.89217 -11.50149 -11.48526 -11.42958 -11.10983 -10.88166 -10.75286 -10.41131 -10.02963 -9.80939 -9.62578 -9.45229 -9.41963 -9.06444 -8.59253 -8.37588 -8.33496 -5.99163 -4.00936 0.55874 1.04676 2.36042 2.72007 2.98767 3.03144 3.36174 3.40482 3.43416 3.71997 4.33058 4.38010 4.47919 4.62248 4.73773 4.88132 4.92295 4.94979 5.14058 5.23987 5.26214 5.37014 5.40492 5.43839 5.77063 5.88181 6.01917 6.05329 6.11321 6.20591 6.31306 6.51809 6.84049 6.99037 7.00656 7.07318 7.36145 7.64307 7.72812 7.92373 7.99092 8.39950 8.72317 9.04137 9.62691 11.12328 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027291 B = 0.002646 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.714271 B =10578.686521 C =10924.531596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.279 6.279 3 C 0.187 3.813 4 C -0.221 4.221 5 C -0.054 4.054 6 C -0.167 4.167 7 C -0.048 4.048 8 C -0.166 4.166 9 C 0.574 3.426 10 O -0.487 6.487 11 N -0.591 5.591 12 N -0.253 5.253 13 C 0.105 3.895 14 C -0.041 4.041 15 H 0.080 0.920 16 C -0.127 4.127 17 C 0.034 3.966 18 C -0.515 4.515 19 H 0.059 0.941 20 C 0.057 3.943 21 N -0.896 5.896 22 Si 0.892 3.108 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.276 1.276 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.104 0.896 29 H 0.136 0.864 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.375 0.625 34 H 0.100 0.900 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.035 0.965 38 H 0.021 0.979 39 H 0.019 0.981 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.542 16.093 -8.167 25.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.189 6.189 3 C 0.139 3.861 4 C -0.239 4.239 5 C -0.072 4.072 6 C -0.185 4.185 7 C -0.067 4.067 8 C -0.171 4.171 9 C 0.361 3.639 10 O -0.359 6.359 11 N -0.334 5.334 12 N -0.054 5.054 13 C -0.110 4.110 14 C -0.062 4.062 15 H 0.098 0.902 16 C -0.186 4.186 17 C -0.004 4.004 18 C -0.554 4.554 19 H 0.077 0.923 20 C -0.144 4.144 21 N -0.536 5.536 22 Si 0.720 3.280 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.202 1.202 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.122 0.878 29 H 0.153 0.847 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.214 0.786 34 H 0.118 0.882 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.054 0.946 38 H 0.039 0.961 39 H 0.037 0.963 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.682 14.620 -8.000 25.790 hybrid contribution 1.129 0.648 0.260 1.327 sum -18.554 15.268 -7.740 25.244 Atomic orbital electron populations 1.23184 0.78607 1.04531 1.01097 1.86416 1.20872 1.25264 1.86392 1.19029 0.90791 0.85082 0.91237 1.21256 1.00405 0.91972 1.10294 1.21136 0.94731 0.97096 0.94233 1.20992 0.93850 0.98467 1.05191 1.21216 0.99961 0.90851 0.94682 1.19307 0.90876 0.93682 1.13276 1.17660 0.80174 0.88845 0.77209 1.90835 1.70771 1.28546 1.45775 1.46976 1.06161 1.05480 1.74744 1.74575 1.07839 1.08113 1.14907 1.26736 0.90651 1.01377 0.92220 1.20382 0.95394 0.91483 0.98975 0.90172 1.21669 0.98815 1.03024 0.95068 1.19119 0.93430 0.97702 0.90194 1.21134 1.24597 1.01291 1.08348 0.92264 1.24998 0.96949 0.96794 0.95645 1.69947 1.37160 1.34347 1.12103 0.86649 0.79750 0.84235 0.77333 1.20201 1.21396 1.20195 0.92541 0.92586 0.87802 0.84669 0.85223 0.85084 0.85027 0.78633 0.88237 0.93171 0.90767 0.94583 0.96086 0.96311 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.28 -3.81 8.57 -40.54 -0.35 -4.16 16 3 C 0.19 2.33 6.70 -38.69 -0.26 2.07 16 4 C -0.22 -1.93 9.03 -39.47 -0.36 -2.29 16 5 C -0.05 -0.39 10.03 -39.53 -0.40 -0.79 16 6 C -0.17 -1.28 10.02 -39.63 -0.40 -1.67 16 7 C -0.05 -0.47 9.54 -39.19 -0.37 -0.84 16 8 C -0.17 -2.21 5.89 -104.85 -0.62 -2.82 16 9 C 0.57 9.96 7.88 -12.49 -0.10 9.86 16 10 O -0.49 -10.55 15.50 -16.61 -0.26 -10.80 16 11 N -0.59 -9.59 6.20 30.45 0.19 -9.41 16 12 N -0.25 -4.93 10.93 32.67 0.36 -4.57 16 13 C 0.10 1.89 9.66 -13.86 -0.13 1.76 16 14 C -0.04 -0.84 2.75 -91.77 -0.25 -1.09 16 15 H 0.08 1.75 8.11 -51.93 -0.42 1.33 16 16 C -0.13 -2.26 8.99 37.16 0.33 -1.93 16 17 C 0.03 0.84 4.43 -27.89 -0.12 0.72 16 18 C -0.52 -14.11 8.41 -34.44 -0.29 -14.40 16 19 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 22 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H 0.06 0.35 7.66 -51.93 -0.40 -0.04 16 27 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 16 28 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.14 0.83 6.30 -52.48 -0.33 0.50 16 30 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 31 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 32 H 0.13 0.97 6.40 -52.48 -0.34 0.64 16 33 H 0.38 4.55 6.66 -182.60 -1.22 3.33 16 34 H 0.10 1.49 8.00 -52.49 -0.42 1.07 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.07 1.40 6.95 -51.93 -0.36 1.03 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 LS Contribution 343.85 15.07 5.18 5.18 Total: -1.00 -35.64 343.85 -7.58 -43.22 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -6.35 Total: -1.36 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -2.07 Total: -8.74 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 1.28 Total: -39.81 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.60 Total: -14.96 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.64 -7.58 -43.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766021020.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.379 kcal (2) G-P(sol) polarization free energy of solvation -35.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds