Wall clock time and date at job start Tue Mar 31 2020 06:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35652 * 117.00064 * 2 1 4 4 C 1.38698 * 120.15150 * 0.02562 * 3 2 1 5 5 C 1.38065 * 120.08908 * 179.97438 * 4 3 2 6 6 C 1.38545 * 120.39213 * 0.02562 * 5 4 3 7 7 C 1.37785 * 120.30097 * 359.97438 * 6 5 4 8 8 C 1.39722 * 119.90682 * 359.97438 * 7 6 5 9 9 C 1.47501 * 120.18969 * 180.02562 * 8 7 6 10 10 O 1.21614 * 119.99383 * 179.97438 * 9 8 7 11 11 N 1.34772 * 120.00119 * 0.02562 * 9 8 7 12 12 N 1.40102 * 119.99614 * 179.97438 * 11 9 8 13 13 C 1.28018 * 119.99657 * 179.97438 * 12 11 9 14 14 C 1.50706 * 119.99745 * 179.97438 * 13 12 11 15 15 H 1.08999 * 109.47031 * 0.02562 * 14 13 12 16 16 C 1.52999 * 109.46778 * 120.00144 * 14 13 12 17 17 C 1.52995 * 109.47257 * 240.00102 * 14 13 12 18 18 C 1.50698 * 109.47421 * 175.00123 * 17 14 13 19 19 H 1.07998 * 119.99681 * 0.02562 * 18 17 14 20 20 C 1.37869 * 120.00012 * 179.97438 * 18 17 14 21 21 N 1.31510 * 120.00527 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00007 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46947 * 60.00052 * 22 20 18 24 24 H 1.48496 * 109.47635 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47066 * 300.00473 * 22 20 18 26 26 H 1.08993 * 109.47135 * 299.99995 * 1 2 3 27 27 H 1.08997 * 109.46910 * 60.00096 * 1 2 3 28 28 H 1.09002 * 109.46863 * 179.97438 * 1 2 3 29 29 H 1.08005 * 119.95737 * 0.25349 * 4 3 2 30 30 H 1.08005 * 119.80345 * 179.97438 * 5 4 3 31 31 H 1.08002 * 119.84930 * 179.97438 * 6 5 4 32 32 H 1.08005 * 120.04369 * 180.02562 * 7 6 5 33 33 H 0.96993 * 120.00492 * 359.97438 * 11 9 8 34 34 H 1.07994 * 120.00375 * 0.02562 * 13 12 11 35 35 H 1.08999 * 109.47338 * 60.00184 * 16 14 13 36 36 H 1.09000 * 109.46745 * 179.97438 * 16 14 13 37 37 H 1.08994 * 109.47588 * 299.99908 * 16 14 13 38 38 H 1.09005 * 109.46947 * 295.00738 * 17 14 13 39 39 H 1.09000 * 109.47201 * 54.99835 * 17 14 13 40 40 H 0.97003 * 120.00746 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2926 2.3739 0.0005 5 6 1.9207 3.6034 0.0011 6 6 3.3039 3.6838 0.0005 7 6 4.0669 2.5366 0.0000 8 6 3.4443 1.2858 0.0005 9 6 4.2551 0.0536 0.0005 10 8 3.7095 -1.0333 0.0015 11 7 5.6006 0.1323 0.0006 12 7 6.3706 -1.0382 0.0011 13 6 7.6486 -0.9634 0.0006 14 6 8.4770 -2.2224 0.0018 15 1 7.8182 -3.0908 0.0025 16 6 9.3594 -2.2534 -1.2477 17 6 9.3602 -2.2507 1.2507 18 6 10.0969 -3.5637 1.3155 19 1 9.9502 -4.3038 0.5428 20 6 10.9590 -3.8196 2.3605 21 7 11.1381 -2.9182 3.3012 22 14 11.8717 -5.4475 2.4412 23 1 12.7192 -5.6003 1.2313 24 1 12.7290 -5.4749 3.6533 25 1 10.8920 -6.5617 2.5031 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2139 2.3194 0.0051 30 1 1.3304 4.5078 0.0011 31 1 3.7861 4.6502 0.0005 32 1 5.1449 2.6041 0.0000 33 1 6.0357 0.9991 0.0002 34 1 8.1331 0.0017 0.0002 35 1 10.0182 -1.3850 -1.2489 36 1 9.9588 -3.1637 -1.2466 37 1 8.7303 -2.2333 -2.1375 38 1 10.0790 -1.4324 1.2060 39 1 8.7377 -2.1391 2.1385 40 1 11.7449 -3.0980 4.0363 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766021020.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:01 Heat of formation + Delta-G solvation = -35.969046 kcal Electronic energy + Delta-G solvation = -21743.763339 eV Core-core repulsion = 18330.933211 eV Total energy + Delta-G solvation = -3412.830128 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.62247 -40.11297 -38.42194 -38.25280 -36.34857 -34.40195 -33.10569 -31.43179 -31.13805 -28.86551 -28.19097 -26.15047 -25.09088 -23.56076 -22.85763 -21.77700 -20.79588 -19.55890 -18.71801 -18.13069 -18.05395 -17.04026 -16.86415 -16.49912 -16.22271 -16.01875 -15.68417 -15.06379 -14.97372 -14.70758 -14.49864 -14.49250 -13.80818 -13.55035 -13.17719 -13.13908 -12.80356 -12.73828 -12.63828 -12.47702 -12.24763 -12.16102 -12.07563 -11.77799 -11.35904 -11.27929 -11.13072 -10.84916 -10.50493 -10.18203 -9.84783 -9.29112 -8.15336 -6.23914 -0.25007 0.36255 1.00420 1.43608 1.46593 1.47613 1.54223 1.96713 2.30107 2.45614 2.80343 3.19160 3.46280 3.73616 3.85155 3.91805 4.02168 4.19565 4.31487 4.35132 4.36549 4.44823 4.47265 4.57646 4.67189 4.69582 4.79476 5.00489 5.11562 5.21584 5.27797 5.29398 5.41814 5.48106 5.53849 5.72178 5.73642 5.87441 6.09922 6.28127 6.38714 6.58782 6.90208 7.43524 7.44046 8.96545 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027291 B = 0.002646 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.714271 B =10578.686521 C =10924.531596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.323 6.323 3 C 0.164 3.836 4 C -0.219 4.219 5 C -0.040 4.040 6 C -0.161 4.161 7 C -0.049 4.049 8 C -0.202 4.202 9 C 0.568 3.432 10 O -0.546 6.546 11 N -0.581 5.581 12 N -0.292 5.292 13 C 0.111 3.889 14 C -0.034 4.034 15 H 0.058 0.942 16 C -0.120 4.120 17 C 0.041 3.959 18 C -0.530 4.530 19 H 0.065 0.935 20 C 0.001 3.999 21 N -0.934 5.934 22 Si 0.960 3.040 23 H -0.262 1.262 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.105 0.895 29 H 0.161 0.839 30 H 0.170 0.830 31 H 0.166 0.834 32 H 0.149 0.851 33 H 0.397 0.603 34 H 0.135 0.865 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.013 0.987 39 H -0.018 1.018 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.092 18.587 -9.183 28.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.235 6.235 3 C 0.116 3.884 4 C -0.238 4.238 5 C -0.058 4.058 6 C -0.179 4.179 7 C -0.067 4.067 8 C -0.207 4.207 9 C 0.358 3.642 10 O -0.423 6.423 11 N -0.325 5.325 12 N -0.094 5.094 13 C -0.103 4.103 14 C -0.056 4.056 15 H 0.076 0.924 16 C -0.178 4.178 17 C 0.003 3.997 18 C -0.568 4.568 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.574 5.574 22 Si 0.785 3.215 23 H -0.187 1.187 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.124 0.876 29 H 0.179 0.821 30 H 0.187 0.813 31 H 0.183 0.817 32 H 0.167 0.833 33 H 0.238 0.762 34 H 0.152 0.848 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.031 0.969 39 H 0.001 0.999 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.218 17.148 -9.035 28.008 hybrid contribution 1.181 -0.001 0.583 1.317 sum -19.037 17.147 -8.452 26.979 Atomic orbital electron populations 1.23438 0.76417 1.05377 1.02893 1.86354 1.23467 1.26844 1.86802 1.19407 0.90903 0.85921 0.92201 1.21580 1.01580 0.91208 1.09425 1.21683 0.95039 0.97813 0.91260 1.21438 0.94175 0.98971 1.03347 1.21466 1.01133 0.90094 0.94048 1.19248 0.91160 0.93003 1.17318 1.18513 0.80299 0.89758 0.75604 1.90784 1.71752 1.30949 1.48774 1.46805 1.05929 1.05498 1.74251 1.74445 1.08795 1.10927 1.15251 1.26549 0.90283 1.01634 0.91870 1.20128 0.95062 0.92180 0.98201 0.92361 1.21586 0.98699 1.03065 0.94425 1.18947 0.93162 0.96599 0.90972 1.21566 1.24523 1.02303 1.08429 0.91713 1.25886 0.98001 1.00419 0.95328 1.70076 1.38089 1.36440 1.12818 0.85581 0.78513 0.79666 0.77787 1.18676 1.21138 1.19883 0.90771 0.90570 0.87650 0.82149 0.81279 0.81696 0.83329 0.76153 0.84824 0.91650 0.92049 0.92253 0.96898 0.99922 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.32 16 2 O -0.32 -9.21 8.57 -68.75 -0.59 -9.80 16 3 C 0.16 4.05 6.70 22.85 0.15 4.20 16 4 C -0.22 -3.28 9.03 22.34 0.20 -3.08 16 5 C -0.04 -0.41 10.03 22.30 0.22 -0.19 16 6 C -0.16 -1.83 10.02 22.24 0.22 -1.61 16 7 C -0.05 -0.85 9.54 22.52 0.21 -0.63 16 8 C -0.20 -5.39 5.89 -20.01 -0.12 -5.51 16 9 C 0.57 20.58 7.88 86.69 0.68 21.26 16 10 O -0.55 -25.29 15.50 16.84 0.26 -25.03 16 11 N -0.58 -19.13 6.20 -175.82 -1.09 -20.22 16 12 N -0.29 -11.66 10.93 -50.46 -0.55 -12.21 16 13 C 0.11 4.00 9.66 88.67 0.86 4.85 16 14 C -0.03 -1.43 2.75 -11.54 -0.03 -1.46 16 15 H 0.06 2.64 8.11 -2.39 -0.02 2.62 16 16 C -0.12 -4.13 8.99 71.98 0.65 -3.49 16 17 C 0.04 2.13 4.43 29.85 0.13 2.26 16 18 C -0.53 -29.49 8.41 25.60 0.22 -29.28 16 19 H 0.06 3.45 7.06 -2.91 -0.02 3.43 16 20 C 0.00 0.07 5.46 84.65 0.46 0.53 16 21 N -0.93 -56.37 13.29 21.44 0.28 -56.09 16 22 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 23 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 24 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 25 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 26 H 0.07 0.85 7.66 -2.39 -0.02 0.84 16 27 H 0.08 0.84 7.67 -2.39 -0.02 0.82 16 28 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.16 1.46 6.30 -2.91 -0.02 1.44 16 30 H 0.17 0.44 8.06 -2.91 -0.02 0.41 16 31 H 0.17 0.78 8.06 -2.91 -0.02 0.75 16 32 H 0.15 1.86 6.40 -2.91 -0.02 1.84 16 33 H 0.40 9.33 6.66 -213.33 -1.42 7.91 16 34 H 0.13 3.80 8.00 -2.91 -0.02 3.78 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.06 2.27 6.95 -2.39 -0.02 2.25 16 37 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 39 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 40 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -82.28 343.85 4.95 -77.33 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -0.37 Total: 10.51 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: 4.97 Total: -10.80 kcal Atomic # 7 Polarization: -87.16 SS G_CDS: -1.36 Total: -88.52 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -0.33 Total: -34.83 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -82.28 4.95 -77.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766021020.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.360 kcal (2) G-P(sol) polarization free energy of solvation -82.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds