Wall clock time and date at job start Tue Mar 31 2020 06:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47138 * 2 1 4 4 C 1.50693 * 109.47516 * 240.00086 * 2 1 3 5 5 H 1.08005 * 119.99982 * 274.99497 * 4 2 1 6 6 C 1.37883 * 120.00165 * 94.99482 * 4 2 1 7 7 N 1.31515 * 119.99979 * 184.91765 * 6 4 2 8 8 Si 1.86797 * 119.99868 * 4.91583 * 6 4 2 9 9 H 1.48503 * 109.46946 * 84.83515 * 8 6 4 10 10 H 1.48498 * 109.47245 * 204.83228 * 8 6 4 11 11 H 1.48492 * 109.47214 * 324.83640 * 8 6 4 12 12 O 1.45197 * 109.47370 * 119.99518 * 2 1 3 13 13 C 1.34753 * 117.00662 * 270.00572 * 12 2 1 14 14 O 1.21513 * 119.99575 * 359.97438 * 13 12 2 15 15 C 1.47404 * 120.00493 * 179.72067 * 13 12 2 16 16 C 1.40398 * 120.48171 * 180.27370 * 15 13 12 17 17 C 1.36838 * 118.49265 * 180.02562 * 16 15 13 18 18 C 1.39423 * 119.37635 * 0.02562 * 17 16 15 19 19 N 1.38430 * 119.52897 * 179.97438 * 18 17 16 20 20 C 1.48533 * 111.00001 * 62.60083 * 19 18 17 21 21 C 1.54936 * 103.22294 * 159.72210 * 20 19 18 22 22 C 1.54596 * 102.92172 * 322.58727 * 21 20 19 23 23 C 1.47893 * 110.99821 * 180.02562 * 19 18 17 24 24 N 1.32608 * 120.93497 * 0.02562 * 18 17 16 25 25 C 1.31661 * 121.64452 * 359.69656 * 24 18 17 26 26 H 1.09002 * 109.47635 * 295.03717 * 1 2 3 27 27 H 1.08999 * 109.47338 * 55.03511 * 1 2 3 28 28 H 1.08995 * 109.47228 * 175.03350 * 1 2 3 29 29 H 0.97004 * 120.00084 * 179.97438 * 7 6 4 30 30 H 1.08005 * 120.75773 * 359.97438 * 16 15 13 31 31 H 1.07991 * 120.31108 * 179.97438 * 17 16 15 32 32 H 1.08998 * 110.66516 * 278.15547 * 20 19 18 33 33 H 1.08995 * 110.66435 * 41.28744 * 20 19 18 34 34 H 1.09001 * 110.72544 * 204.22735 * 21 20 19 35 35 H 1.08995 * 110.88056 * 81.01704 * 21 20 19 36 36 H 1.09006 * 110.30775 * 263.03852 * 22 21 20 37 37 H 1.09004 * 110.30945 * 140.87884 * 22 21 20 38 38 H 1.09000 * 109.92134 * 333.50030 * 23 19 18 39 39 H 1.09001 * 109.92415 * 94.80347 * 23 19 18 40 40 H 1.08001 * 119.74475 * 180.29550 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.1356 -1.7854 -1.2289 6 6 2.3602 0.0122 -2.3580 7 7 2.7059 -0.6131 -3.4622 8 14 2.3133 1.8791 -2.3175 9 1 3.5989 2.3950 -1.7822 10 1 2.1055 2.3991 -3.6928 11 1 1.1984 2.3274 -1.4451 12 8 2.0140 -0.6844 1.1856 13 6 2.2179 0.0670 2.2854 14 8 1.9976 1.2616 2.2545 15 6 2.7027 -0.5610 3.5277 16 6 2.9131 0.2113 4.6811 17 6 3.3644 -0.4135 5.8118 18 6 3.6008 -1.7873 5.7860 19 7 4.0578 -2.4226 6.9279 20 6 3.0665 -2.3166 8.0289 21 6 3.4694 -3.4707 8.9808 22 6 3.8924 -4.5923 8.0046 23 6 4.2442 -3.8703 6.6903 24 7 3.3949 -2.4938 4.6828 25 6 2.9563 -1.9332 3.5753 26 1 -0.3634 0.4349 0.9311 27 1 -0.3634 0.5889 -0.8422 28 1 -0.3633 -1.0237 -0.0890 29 1 2.9362 -0.1048 -4.2556 30 1 2.7239 1.2746 4.6760 31 1 3.5366 0.1523 6.7154 32 1 3.1531 -1.3541 8.5331 33 1 2.0549 -2.4647 7.6513 34 1 2.6194 -3.7863 9.5859 35 1 4.3050 -3.1768 9.6159 36 1 3.0674 -5.2869 7.8459 37 1 4.7641 -5.1210 8.3905 38 1 3.5795 -4.2046 5.8938 39 1 5.2811 -4.0722 6.4215 40 1 2.7948 -2.5388 2.6957 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774087777.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:25 Heat of formation + Delta-G solvation = -38.159673 kcal Electronic energy + Delta-G solvation = -22522.694781 eV Core-core repulsion = 19109.769660 eV Total energy + Delta-G solvation = -3412.925121 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.02223 -39.58506 -38.24363 -35.85754 -33.28507 -32.98285 -32.61610 -30.73683 -29.38365 -29.23268 -25.44372 -24.54321 -23.77098 -22.24856 -21.27793 -20.78913 -19.86153 -18.08791 -17.63838 -17.00361 -16.38397 -16.24136 -15.63994 -15.25486 -14.83726 -14.60036 -14.37771 -13.95517 -13.66669 -13.21548 -12.99534 -12.90770 -12.59966 -12.46405 -12.38179 -12.34265 -11.77552 -11.70278 -11.51768 -11.13670 -11.00709 -10.91347 -10.73530 -10.27345 -10.09332 -9.97794 -9.84764 -9.59329 -9.40031 -9.16186 -8.74195 -8.36448 -6.29656 -4.33911 0.59537 1.20739 2.87779 3.19113 3.28027 3.33455 3.34525 3.46760 3.85350 4.11284 4.24645 4.27800 4.54955 4.60363 4.86298 4.90035 4.96722 4.97204 5.02881 5.10502 5.31920 5.41422 5.45296 5.48692 5.57378 5.62515 5.76664 5.80222 5.93366 6.08260 6.16186 6.30732 6.32174 6.40463 6.49372 6.66313 6.89894 7.12055 7.30487 7.47705 7.78069 8.19463 8.57107 8.80397 9.29214 10.81533 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033373 B = 0.003256 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.788529 B = 8597.563537 C = 8973.559077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.183 3.817 3 H 0.048 0.952 4 C -0.519 4.519 5 H 0.087 0.913 6 C 0.083 3.917 7 N -0.881 5.881 8 Si 0.869 3.131 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.260 1.260 12 O -0.343 6.343 13 C 0.503 3.497 14 O -0.524 6.524 15 C -0.194 4.194 16 C 0.002 3.998 17 C -0.193 4.193 18 C 0.323 3.677 19 N -0.464 5.464 20 C 0.044 3.956 21 C -0.124 4.124 22 C -0.133 4.133 23 C 0.033 3.967 24 N -0.526 5.526 25 C 0.187 3.813 26 H 0.030 0.970 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.271 0.729 30 H 0.148 0.852 31 H 0.141 0.859 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.600 -4.115 23.781 24.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.130 3.870 3 H 0.066 0.934 4 C -0.556 4.556 5 H 0.105 0.895 6 C -0.122 4.122 7 N -0.517 5.517 8 Si 0.695 3.305 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.185 1.185 12 O -0.259 6.259 13 C 0.347 3.653 14 O -0.416 6.416 15 C -0.198 4.198 16 C -0.024 4.024 17 C -0.215 4.215 18 C 0.091 3.909 19 N -0.182 5.182 20 C -0.082 4.082 21 C -0.162 4.162 22 C -0.172 4.172 23 C -0.094 4.094 24 N -0.240 5.240 25 C 0.029 3.971 26 H 0.049 0.951 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.166 0.834 31 H 0.159 0.841 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 1.248 -4.433 23.708 24.151 hybrid contribution -0.649 1.740 -0.504 1.925 sum 0.599 -2.692 23.203 23.366 Atomic orbital electron populations 1.22239 0.97422 1.01685 0.99717 1.21036 0.91499 0.94183 0.80268 0.93450 1.20792 1.45495 0.96365 0.92954 0.89537 1.24912 0.93473 0.98626 0.95187 1.69852 1.43877 1.36267 1.01697 0.86962 0.79978 0.85783 0.77765 1.19535 1.20687 1.18466 1.86719 1.75599 1.43067 1.20470 1.20796 0.74701 0.85304 0.84508 1.90760 1.49568 1.16273 1.84959 1.20322 1.09634 0.95878 0.93980 1.21327 0.90101 1.00910 0.90070 1.21186 1.06307 0.93751 1.00290 1.20169 0.89173 0.90973 0.90575 1.61728 1.38799 1.13560 1.04068 1.23334 0.93329 1.00719 0.90792 1.22514 1.01798 0.94541 0.97329 1.22470 1.01878 0.97911 0.94905 1.22943 1.03607 0.84726 0.98133 1.67712 1.16943 1.39160 1.00190 1.23166 0.87436 0.91612 0.94896 0.95130 0.91907 0.92309 0.91929 0.83382 0.84095 0.89064 0.92442 0.90439 0.90348 0.91084 0.90702 0.89527 0.89869 0.80496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.53 37.15 0.35 -3.03 16 2 C 0.18 4.57 2.23 -27.89 -0.06 4.51 16 3 H 0.05 1.24 4.31 -51.93 -0.22 1.02 16 4 C -0.52 -14.63 9.25 -34.44 -0.32 -14.95 16 5 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 6 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 7 N -0.88 -26.11 13.96 55.43 0.77 -25.34 16 8 Si 0.87 21.42 26.99 -169.99 -4.59 16.83 16 9 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.26 -6.25 6.82 56.52 0.39 -5.86 16 12 O -0.34 -7.84 9.13 -40.64 -0.37 -8.21 16 13 C 0.50 10.38 7.87 34.46 0.27 10.65 16 14 O -0.52 -11.87 15.67 -19.28 -0.30 -12.17 16 15 C -0.19 -3.20 5.89 -104.84 -0.62 -3.82 16 16 C 0.00 0.02 9.65 -39.28 -0.38 -0.36 16 17 C -0.19 -2.28 9.38 -39.65 -0.37 -2.65 16 18 C 0.32 4.13 6.20 -155.29 -0.96 3.17 16 19 N -0.46 -4.94 5.28 -169.26 -0.89 -5.84 16 20 C 0.04 0.34 6.03 -1.90 -0.01 0.33 16 21 C -0.12 -0.76 7.06 -24.87 -0.18 -0.94 16 22 C -0.13 -0.93 6.93 -25.36 -0.18 -1.11 16 23 C 0.03 0.32 6.34 -2.74 -0.02 0.30 16 24 N -0.53 -7.55 8.10 -12.13 -0.10 -7.65 16 25 C 0.19 2.88 10.79 -17.11 -0.18 2.69 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.15 1.90 7.73 -52.48 -0.41 1.49 16 31 H 0.14 1.27 8.01 -52.49 -0.42 0.85 16 32 H 0.09 0.59 8.11 -51.93 -0.42 0.17 16 33 H 0.06 0.48 7.99 -51.93 -0.42 0.07 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.98 6.48 -51.93 -0.34 0.65 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.18 2.65 7.61 -52.49 -0.40 2.25 16 LS Contribution 334.51 15.07 5.04 5.04 Total: -1.00 -31.71 334.51 -8.76 -40.47 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -5.58 Total: -0.20 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -2.75 Total: -2.94 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: -0.22 Total: -38.83 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.67 Total: -20.37 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.59 Total: 16.83 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.71 -8.76 -40.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774087777.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.313 kcal (2) G-P(sol) polarization free energy of solvation -31.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds