Wall clock time and date at job start Tue Mar 31 2020 06:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47138 * 2 1 4 4 C 1.50693 * 109.47516 * 240.00086 * 2 1 3 5 5 H 1.08005 * 119.99982 * 274.99497 * 4 2 1 6 6 C 1.37883 * 120.00165 * 94.99482 * 4 2 1 7 7 N 1.31515 * 119.99979 * 184.91765 * 6 4 2 8 8 Si 1.86797 * 119.99868 * 4.91583 * 6 4 2 9 9 H 1.48503 * 109.46946 * 84.83515 * 8 6 4 10 10 H 1.48498 * 109.47245 * 204.83228 * 8 6 4 11 11 H 1.48492 * 109.47214 * 324.83640 * 8 6 4 12 12 O 1.45197 * 109.47370 * 119.99518 * 2 1 3 13 13 C 1.34753 * 117.00662 * 270.00572 * 12 2 1 14 14 O 1.21513 * 119.99575 * 359.97438 * 13 12 2 15 15 C 1.47404 * 120.00493 * 179.72067 * 13 12 2 16 16 C 1.40398 * 120.48171 * 180.27370 * 15 13 12 17 17 C 1.36838 * 118.49265 * 180.02562 * 16 15 13 18 18 C 1.39423 * 119.37635 * 0.02562 * 17 16 15 19 19 N 1.38430 * 119.52897 * 179.97438 * 18 17 16 20 20 C 1.48533 * 111.00001 * 62.60083 * 19 18 17 21 21 C 1.54936 * 103.22294 * 159.72210 * 20 19 18 22 22 C 1.54596 * 102.92172 * 322.58727 * 21 20 19 23 23 C 1.47893 * 110.99821 * 180.02562 * 19 18 17 24 24 N 1.32608 * 120.93497 * 0.02562 * 18 17 16 25 25 C 1.31661 * 121.64452 * 359.69656 * 24 18 17 26 26 H 1.09002 * 109.47635 * 295.03717 * 1 2 3 27 27 H 1.08999 * 109.47338 * 55.03511 * 1 2 3 28 28 H 1.08995 * 109.47228 * 175.03350 * 1 2 3 29 29 H 0.97004 * 120.00084 * 179.97438 * 7 6 4 30 30 H 1.08005 * 120.75773 * 359.97438 * 16 15 13 31 31 H 1.07991 * 120.31108 * 179.97438 * 17 16 15 32 32 H 1.08998 * 110.66516 * 278.15547 * 20 19 18 33 33 H 1.08995 * 110.66435 * 41.28744 * 20 19 18 34 34 H 1.09001 * 110.72544 * 204.22735 * 21 20 19 35 35 H 1.08995 * 110.88056 * 81.01704 * 21 20 19 36 36 H 1.09006 * 110.30775 * 263.03852 * 22 21 20 37 37 H 1.09004 * 110.30945 * 140.87884 * 22 21 20 38 38 H 1.09000 * 109.92134 * 333.50030 * 23 19 18 39 39 H 1.09001 * 109.92415 * 94.80347 * 23 19 18 40 40 H 1.08001 * 119.74475 * 180.29550 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.1356 -1.7854 -1.2289 6 6 2.3602 0.0122 -2.3580 7 7 2.7059 -0.6131 -3.4622 8 14 2.3133 1.8791 -2.3175 9 1 3.5989 2.3950 -1.7822 10 1 2.1055 2.3991 -3.6928 11 1 1.1984 2.3274 -1.4451 12 8 2.0140 -0.6844 1.1856 13 6 2.2179 0.0670 2.2854 14 8 1.9976 1.2616 2.2545 15 6 2.7027 -0.5610 3.5277 16 6 2.9131 0.2113 4.6811 17 6 3.3644 -0.4135 5.8118 18 6 3.6008 -1.7873 5.7860 19 7 4.0578 -2.4226 6.9279 20 6 3.0665 -2.3166 8.0289 21 6 3.4694 -3.4707 8.9808 22 6 3.8924 -4.5923 8.0046 23 6 4.2442 -3.8703 6.6903 24 7 3.3949 -2.4938 4.6828 25 6 2.9563 -1.9332 3.5753 26 1 -0.3634 0.4349 0.9311 27 1 -0.3634 0.5889 -0.8422 28 1 -0.3633 -1.0237 -0.0890 29 1 2.9362 -0.1048 -4.2556 30 1 2.7239 1.2746 4.6760 31 1 3.5366 0.1523 6.7154 32 1 3.1531 -1.3541 8.5331 33 1 2.0549 -2.4647 7.6513 34 1 2.6194 -3.7863 9.5859 35 1 4.3050 -3.1768 9.6159 36 1 3.0674 -5.2869 7.8459 37 1 4.7641 -5.1210 8.3905 38 1 3.5795 -4.2046 5.8938 39 1 5.2811 -4.0722 6.4215 40 1 2.7948 -2.5388 2.6957 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774087777.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:25 Heat of formation + Delta-G solvation = -57.083345 kcal Electronic energy + Delta-G solvation = -22523.515373 eV Core-core repulsion = 19109.769660 eV Total energy + Delta-G solvation = -3413.745713 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.10454 -41.10388 -39.21722 -37.61695 -35.20789 -34.10471 -33.66481 -32.60548 -30.45874 -29.92419 -27.48217 -25.73974 -24.83188 -23.56207 -22.32377 -21.59740 -21.47834 -19.72464 -18.78667 -18.62459 -17.87657 -17.46681 -16.88314 -16.67533 -16.26269 -15.78340 -15.55295 -14.99545 -14.76501 -14.69744 -14.49473 -14.26456 -14.08474 -13.82859 -13.56169 -13.29907 -13.10838 -13.04811 -12.92491 -12.60506 -12.26568 -12.11798 -12.00606 -11.70288 -11.47268 -11.45129 -11.20920 -11.18511 -10.97306 -10.88922 -10.57776 -9.35582 -8.48132 -6.58152 -0.59105 0.13851 1.24781 1.28765 1.38995 1.45767 1.83673 2.19036 2.41863 2.68714 2.89574 3.22550 3.60163 3.68131 3.75776 3.84411 3.96863 3.98828 4.15529 4.20792 4.32696 4.52529 4.56416 4.56974 4.59291 4.66295 4.79345 4.83175 4.90272 4.97218 4.98909 5.05947 5.15303 5.24896 5.29415 5.30183 5.36707 5.54966 5.58216 5.95036 6.11873 6.50746 6.68426 6.83772 7.09604 8.67138 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033373 B = 0.003256 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.788529 B = 8597.563537 C = 8973.559077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.184 3.816 3 H 0.038 0.962 4 C -0.532 4.532 5 H 0.050 0.950 6 C 0.035 3.965 7 N -0.922 5.922 8 Si 0.928 3.072 9 H -0.270 1.270 10 H -0.266 1.266 11 H -0.248 1.248 12 O -0.354 6.354 13 C 0.503 3.497 14 O -0.547 6.547 15 C -0.218 4.218 16 C 0.006 3.994 17 C -0.180 4.180 18 C 0.326 3.674 19 N -0.467 5.467 20 C 0.039 3.961 21 C -0.117 4.117 22 C -0.129 4.129 23 C 0.028 3.972 24 N -0.539 5.539 25 C 0.187 3.813 26 H 0.047 0.953 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.276 0.724 30 H 0.159 0.841 31 H 0.178 0.822 32 H 0.111 0.889 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.500 -3.052 26.999 27.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.130 3.870 3 H 0.056 0.944 4 C -0.569 4.569 5 H 0.068 0.932 6 C -0.166 4.166 7 N -0.560 5.560 8 Si 0.750 3.250 9 H -0.195 1.195 10 H -0.191 1.191 11 H -0.172 1.172 12 O -0.270 6.270 13 C 0.349 3.651 14 O -0.440 6.440 15 C -0.223 4.223 16 C -0.019 4.019 17 C -0.202 4.202 18 C 0.093 3.907 19 N -0.184 5.184 20 C -0.085 4.085 21 C -0.155 4.155 22 C -0.167 4.167 23 C -0.099 4.099 24 N -0.253 5.253 25 C 0.029 3.971 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.177 0.823 31 H 0.195 0.805 32 H 0.129 0.871 33 H 0.071 0.929 34 H 0.114 0.886 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.143 -3.387 26.962 27.198 hybrid contribution -0.529 1.253 -1.313 1.890 sum 0.614 -2.134 25.649 25.745 Atomic orbital electron populations 1.22144 0.95196 1.02326 1.00809 1.20860 0.93095 0.93039 0.79985 0.94380 1.20920 1.45998 0.94985 0.94975 0.93211 1.25665 0.93001 1.03322 0.94603 1.69957 1.45213 1.38295 1.02535 0.86031 0.80234 0.80013 0.78684 1.19517 1.19054 1.17211 1.86670 1.76177 1.43297 1.20847 1.21388 0.73888 0.85063 0.84735 1.90729 1.50873 1.17099 1.85297 1.20125 1.12536 0.96483 0.93111 1.21478 0.89611 1.01292 0.89516 1.21484 1.04583 0.93341 1.00748 1.20609 0.87619 0.91726 0.90717 1.61787 1.39064 1.13797 1.03738 1.23534 0.92316 1.02652 0.90036 1.22541 1.02856 0.93208 0.96868 1.22464 1.02623 0.98141 0.93519 1.22979 1.02817 0.84727 0.99388 1.67774 1.17626 1.39481 1.00454 1.23047 0.87564 0.91246 0.95261 0.93357 0.91486 0.91859 0.91403 0.82295 0.80493 0.87058 0.92901 0.88570 0.89445 0.90617 0.89537 0.91370 0.90524 0.81276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.44 9.53 71.98 0.69 -5.75 16 2 C 0.18 9.29 2.23 29.84 0.07 9.35 16 3 H 0.04 2.00 4.31 -2.39 -0.01 1.99 16 4 C -0.53 -30.95 9.25 25.60 0.24 -30.72 16 5 H 0.05 3.18 8.06 -2.91 -0.02 3.15 16 6 C 0.04 2.04 5.47 84.66 0.46 2.50 16 7 N -0.92 -56.02 13.96 21.45 0.30 -55.72 16 8 Si 0.93 44.19 26.99 68.60 1.85 46.04 16 9 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.25 -11.28 6.82 99.48 0.68 -10.60 16 12 O -0.35 -16.58 9.13 -56.64 -0.52 -17.10 16 13 C 0.50 20.93 7.87 70.24 0.55 21.48 16 14 O -0.55 -24.62 15.67 19.79 0.31 -24.31 16 15 C -0.22 -7.17 5.89 -20.00 -0.12 -7.28 16 16 C 0.01 0.17 9.65 22.47 0.22 0.38 16 17 C -0.18 -3.73 9.38 22.23 0.21 -3.53 16 18 C 0.33 7.71 6.20 133.27 0.83 8.54 16 19 N -0.47 -8.81 5.28 -689.43 -3.64 -12.45 16 20 C 0.04 0.48 6.03 86.65 0.52 1.01 16 21 C -0.12 -1.02 7.06 31.80 0.22 -0.80 16 22 C -0.13 -1.49 6.93 31.48 0.22 -1.27 16 23 C 0.03 0.51 6.34 86.46 0.55 1.06 16 24 N -0.54 -15.26 8.10 -192.28 -1.56 -16.82 16 25 C 0.19 5.84 10.79 85.05 0.92 6.76 16 26 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 28 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 29 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 30 H 0.16 3.74 7.73 -2.91 -0.02 3.71 16 31 H 0.18 2.39 8.01 -2.92 -0.02 2.36 16 32 H 0.11 0.96 8.11 -2.39 -0.02 0.94 16 33 H 0.05 0.74 7.99 -2.39 -0.02 0.72 16 34 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.08 0.81 8.14 -2.38 -0.02 0.80 16 37 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.07 1.52 6.48 -2.39 -0.02 1.51 16 39 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 40 H 0.17 5.38 7.61 -2.91 -0.02 5.36 16 Total: -1.00 -69.82 334.51 3.33 -66.49 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 1.01 Total: 12.13 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: 5.57 Total: 1.73 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -4.90 Total: -84.98 kcal Atomic # 8 Polarization: -41.20 SS G_CDS: -0.21 Total: -41.40 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.85 Total: 46.04 kcal Total: -69.82 3.33 -66.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774087777.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.410 kcal (2) G-P(sol) polarization free energy of solvation -69.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds