Wall clock time and date at job start Tue Mar 31 2020 06:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 O 1.45198 * 109.46967 * 240.00458 * 2 1 3 13 13 C 1.34757 * 117.00064 * 90.00162 * 12 2 1 14 14 O 1.21512 * 120.00121 * 359.97438 * 13 12 2 15 15 C 1.47399 * 120.00245 * 179.97438 * 13 12 2 16 16 C 1.40407 * 120.48479 * 180.02562 * 15 13 12 17 17 C 1.36832 * 118.48882 * 180.02562 * 16 15 13 18 18 C 1.39411 * 119.39061 * 359.97438 * 17 16 15 19 19 N 1.38424 * 119.53934 * 179.97438 * 18 17 16 20 20 C 1.48530 * 110.99773 * 62.60058 * 19 18 17 21 21 C 1.54938 * 103.22247 * 159.72102 * 20 19 18 22 22 C 1.54590 * 102.92439 * 322.58757 * 21 20 19 23 23 C 1.47894 * 111.00217 * 180.02562 * 19 18 17 24 24 N 1.32622 * 120.92701 * 0.02562 * 18 17 16 25 25 C 1.31655 * 121.64433 * 359.70226 * 24 18 17 26 26 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 27 27 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.08001 * 120.75333 * 359.97438 * 16 15 13 31 31 H 1.07998 * 120.30601 * 179.97438 * 17 16 15 32 32 H 1.08995 * 110.66649 * 278.15850 * 20 19 18 33 33 H 1.09002 * 110.66735 * 41.29270 * 20 19 18 34 34 H 1.09002 * 110.72419 * 204.22435 * 21 20 19 35 35 H 1.09006 * 110.87219 * 81.02285 * 21 20 19 36 36 H 1.09001 * 110.31145 * 263.03728 * 22 21 20 37 37 H 1.09004 * 110.30427 * 140.87428 * 22 21 20 38 38 H 1.09008 * 109.91969 * 333.51029 * 23 19 18 39 39 H 1.08999 * 109.91792 * 94.79947 * 23 19 18 40 40 H 1.08004 * 119.74665 * 180.31660 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 8 2.0140 -0.6844 -1.1856 13 6 2.2179 0.0671 -2.2854 14 8 1.9969 1.2616 -2.2547 15 6 2.7091 -0.5597 -3.5258 16 6 2.9256 0.2137 -4.6774 17 6 3.3816 -0.4103 -5.8065 18 6 3.6166 -1.7842 -5.7814 19 7 4.0774 -2.4188 -6.9220 20 6 5.4122 -1.9005 -7.3170 21 6 5.9764 -3.0261 -8.2199 22 6 5.4728 -4.3119 -7.5250 23 6 4.2604 -3.8672 -6.6856 24 7 3.4040 -2.4921 -4.6802 25 6 2.9708 -1.9305 -3.5710 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.7089 1.1611 3.4845 30 1 2.7357 1.2769 -4.6723 31 1 3.5578 0.1563 -6.7089 32 1 5.3135 -0.9709 -7.8773 33 1 6.0441 -1.7575 -6.4404 34 1 7.0659 -2.9979 -8.2362 35 1 5.5749 -2.9512 -9.2306 36 1 6.2497 -4.7226 -6.8801 37 1 5.1682 -5.0490 -8.2681 38 1 4.4539 -4.0494 -5.6285 39 1 3.3699 -4.4104 -7.0018 40 1 2.8129 -2.5355 -2.6903 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774087780.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:27 Heat of formation + Delta-G solvation = -39.297459 kcal Electronic energy + Delta-G solvation = -22441.631648 eV Core-core repulsion = 19028.657189 eV Total energy + Delta-G solvation = -3412.974459 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.98927 -39.47327 -38.19214 -35.72928 -33.35796 -33.04182 -32.58866 -30.03334 -29.25169 -29.02666 -25.34130 -24.49653 -23.73911 -22.24103 -21.29995 -20.79524 -19.85870 -17.95038 -17.39204 -16.94804 -16.31778 -15.96279 -15.48162 -15.11344 -14.79463 -14.62823 -14.44584 -13.93685 -13.72015 -13.19957 -13.03506 -12.80546 -12.42210 -12.39717 -12.18300 -11.88976 -11.68943 -11.50519 -11.25630 -11.09099 -10.90153 -10.84333 -10.40824 -10.30436 -10.16512 -9.98736 -9.86765 -9.57704 -9.39601 -8.92867 -8.51038 -8.33219 -6.19695 -4.26695 0.63771 1.23689 2.95096 3.24395 3.29321 3.32693 3.39085 3.59215 3.90732 4.13145 4.29266 4.32839 4.56906 4.61965 4.90194 4.93826 4.98892 5.00269 5.11899 5.13506 5.34537 5.46567 5.49338 5.50641 5.60207 5.64088 5.77827 5.82441 5.96516 6.17681 6.33484 6.34728 6.62698 6.88383 6.89391 6.92487 7.12122 7.57372 7.70561 7.79830 7.90805 8.11661 8.58017 8.84990 9.38682 10.87809 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027817 B = 0.003161 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.346441 B = 8854.564525 C = 9489.636656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.217 3.783 3 H 0.048 0.952 4 C -0.521 4.521 5 H 0.070 0.930 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.277 1.277 10 H -0.271 1.271 11 H -0.284 1.284 12 O -0.351 6.351 13 C 0.503 3.497 14 O -0.518 6.518 15 C -0.191 4.191 16 C 0.001 3.999 17 C -0.193 4.193 18 C 0.321 3.679 19 N -0.464 5.464 20 C 0.043 3.957 21 C -0.124 4.124 22 C -0.133 4.133 23 C 0.033 3.967 24 N -0.527 5.527 25 C 0.185 3.815 26 H 0.016 0.984 27 H 0.037 0.963 28 H 0.100 0.900 29 H 0.266 0.734 30 H 0.149 0.851 31 H 0.141 0.859 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.382 -6.799 -20.021 22.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.164 3.836 3 H 0.065 0.935 4 C -0.559 4.559 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.203 1.203 10 H -0.196 1.196 11 H -0.210 1.210 12 O -0.267 6.267 13 C 0.347 3.653 14 O -0.409 6.409 15 C -0.195 4.195 16 C -0.024 4.024 17 C -0.215 4.215 18 C 0.089 3.911 19 N -0.182 5.182 20 C -0.082 4.082 21 C -0.162 4.162 22 C -0.172 4.172 23 C -0.094 4.094 24 N -0.241 5.241 25 C 0.026 3.974 26 H 0.035 0.965 27 H 0.057 0.943 28 H 0.118 0.882 29 H 0.076 0.924 30 H 0.167 0.833 31 H 0.159 0.841 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 8.014 -7.158 -20.276 22.947 hybrid contribution 0.327 0.544 1.446 1.579 sum 8.342 -6.615 -18.830 21.631 Atomic orbital electron populations 1.22173 0.97463 1.00208 1.01469 1.20678 0.91439 0.93971 0.77468 0.93450 1.21021 1.32577 1.13522 0.88815 0.91223 1.24892 0.94931 0.95080 0.99083 1.69901 1.36054 1.22503 1.24211 0.86261 0.79312 0.79126 0.81366 1.20328 1.19600 1.20981 1.86533 1.75858 1.43218 1.21120 1.20652 0.75020 0.85219 0.84415 1.90776 1.49140 1.16194 1.84788 1.20340 1.09209 0.95736 0.94207 1.21335 0.89935 1.01005 0.90160 1.21184 1.06438 0.93898 0.99958 1.20152 0.92800 0.90291 0.87818 1.61732 1.24651 1.05643 1.26146 1.23338 0.86600 0.99241 0.99025 1.22514 1.00612 0.93755 0.99296 1.22467 0.97510 0.97925 0.99263 1.22937 0.98728 0.86038 1.01686 1.67703 1.17646 1.39727 0.98977 1.23139 0.87715 0.91550 0.94947 0.96474 0.94343 0.88175 0.92369 0.83327 0.84105 0.89049 0.92414 0.90439 0.90361 0.91090 0.90732 0.89555 0.89934 0.80620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 9.33 37.16 0.35 -3.61 16 2 C 0.22 5.82 2.56 -27.89 -0.07 5.75 16 3 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 4 C -0.52 -14.56 8.90 -34.44 -0.31 -14.87 16 5 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.21 11.32 55.43 0.63 -24.59 16 8 Si 0.91 21.01 29.54 -169.99 -5.02 15.99 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 10 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 12 O -0.35 -8.32 9.13 -40.65 -0.37 -8.69 16 13 C 0.50 10.79 7.87 34.46 0.27 11.06 16 14 O -0.52 -12.33 15.67 -19.27 -0.30 -12.63 16 15 C -0.19 -3.23 5.89 -104.83 -0.62 -3.85 16 16 C 0.00 0.02 9.65 -39.27 -0.38 -0.36 16 17 C -0.19 -2.33 9.38 -39.65 -0.37 -2.70 16 18 C 0.32 4.16 6.20 -155.29 -0.96 3.20 16 19 N -0.46 -5.00 5.28 -169.26 -0.89 -5.89 16 20 C 0.04 0.35 6.03 -1.90 -0.01 0.34 16 21 C -0.12 -0.78 7.06 -24.87 -0.18 -0.96 16 22 C -0.13 -0.95 6.93 -25.36 -0.18 -1.12 16 23 C 0.03 0.33 6.34 -2.74 -0.02 0.31 16 24 N -0.53 -7.62 8.10 -12.13 -0.10 -7.72 16 25 C 0.18 2.87 10.79 -17.11 -0.18 2.69 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.10 2.71 6.07 -51.93 -0.32 2.40 16 29 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.15 1.97 7.73 -52.49 -0.41 1.57 16 31 H 0.14 1.31 8.01 -52.49 -0.42 0.89 16 32 H 0.09 0.62 8.11 -51.93 -0.42 0.20 16 33 H 0.06 0.51 7.99 -51.93 -0.42 0.09 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.99 6.48 -51.92 -0.34 0.65 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.18 2.65 7.61 -52.48 -0.40 2.25 16 LS Contribution 334.86 15.07 5.05 5.05 Total: -1.00 -31.04 334.86 -9.35 -40.39 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -5.59 Total: 0.60 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -2.75 Total: -2.51 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: -0.36 Total: -38.20 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.67 Total: -21.32 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.04 -9.35 -40.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774087780.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.091 kcal (2) G-P(sol) polarization free energy of solvation -31.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds