Wall clock time and date at job start Tue Mar 31 2020 06:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 O 1.45198 * 109.46967 * 240.00458 * 2 1 3 13 13 C 1.34757 * 117.00064 * 90.00162 * 12 2 1 14 14 O 1.21512 * 120.00121 * 359.97438 * 13 12 2 15 15 C 1.47399 * 120.00245 * 179.97438 * 13 12 2 16 16 C 1.40407 * 120.48479 * 180.02562 * 15 13 12 17 17 C 1.36832 * 118.48882 * 180.02562 * 16 15 13 18 18 C 1.39411 * 119.39061 * 359.97438 * 17 16 15 19 19 N 1.38424 * 119.53934 * 179.97438 * 18 17 16 20 20 C 1.48530 * 110.99773 * 62.60058 * 19 18 17 21 21 C 1.54938 * 103.22247 * 159.72102 * 20 19 18 22 22 C 1.54590 * 102.92439 * 322.58757 * 21 20 19 23 23 C 1.47894 * 111.00217 * 180.02562 * 19 18 17 24 24 N 1.32622 * 120.92701 * 0.02562 * 18 17 16 25 25 C 1.31655 * 121.64433 * 359.70226 * 24 18 17 26 26 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 27 27 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.08001 * 120.75333 * 359.97438 * 16 15 13 31 31 H 1.07998 * 120.30601 * 179.97438 * 17 16 15 32 32 H 1.08995 * 110.66649 * 278.15850 * 20 19 18 33 33 H 1.09002 * 110.66735 * 41.29270 * 20 19 18 34 34 H 1.09002 * 110.72419 * 204.22435 * 21 20 19 35 35 H 1.09006 * 110.87219 * 81.02285 * 21 20 19 36 36 H 1.09001 * 110.31145 * 263.03728 * 22 21 20 37 37 H 1.09004 * 110.30427 * 140.87428 * 22 21 20 38 38 H 1.09008 * 109.91969 * 333.51029 * 23 19 18 39 39 H 1.08999 * 109.91792 * 94.79947 * 23 19 18 40 40 H 1.08004 * 119.74665 * 180.31660 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 8 2.0140 -0.6844 -1.1856 13 6 2.2179 0.0671 -2.2854 14 8 1.9969 1.2616 -2.2547 15 6 2.7091 -0.5597 -3.5258 16 6 2.9256 0.2137 -4.6774 17 6 3.3816 -0.4103 -5.8065 18 6 3.6166 -1.7842 -5.7814 19 7 4.0774 -2.4188 -6.9220 20 6 5.4122 -1.9005 -7.3170 21 6 5.9764 -3.0261 -8.2199 22 6 5.4728 -4.3119 -7.5250 23 6 4.2604 -3.8672 -6.6856 24 7 3.4040 -2.4921 -4.6802 25 6 2.9708 -1.9305 -3.5710 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.7089 1.1611 3.4845 30 1 2.7357 1.2769 -4.6723 31 1 3.5578 0.1563 -6.7089 32 1 5.3135 -0.9709 -7.8773 33 1 6.0441 -1.7575 -6.4404 34 1 7.0659 -2.9979 -8.2362 35 1 5.5749 -2.9512 -9.2306 36 1 6.2497 -4.7226 -6.8801 37 1 5.1682 -5.0490 -8.2681 38 1 4.4539 -4.0494 -5.6285 39 1 3.3699 -4.4104 -7.0018 40 1 2.8129 -2.5355 -2.6903 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774087780.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:26 Heat of formation + Delta-G solvation = -56.917071 kcal Electronic energy + Delta-G solvation = -22442.395692 eV Core-core repulsion = 19028.657189 eV Total energy + Delta-G solvation = -3413.738502 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.09660 -41.06022 -39.20623 -37.59015 -35.35828 -34.08820 -33.65875 -31.82569 -30.37217 -29.92025 -27.47119 -25.73883 -24.82881 -23.67024 -22.40113 -21.61274 -21.47689 -19.34995 -18.66266 -18.62766 -17.66731 -17.38583 -16.90614 -16.66451 -16.33882 -15.78347 -15.55939 -15.09996 -14.75479 -14.52145 -14.28771 -14.11227 -13.90059 -13.74604 -13.29636 -13.22430 -13.10854 -13.00489 -12.80545 -12.41833 -12.26222 -12.17114 -12.11462 -11.69485 -11.61297 -11.45660 -11.18434 -11.01902 -10.97088 -10.61514 -10.57720 -9.35530 -8.29566 -6.46442 -0.58735 0.13316 1.41864 1.44236 1.48057 1.55289 1.89896 2.39278 2.42771 2.69706 3.01343 3.22453 3.60362 3.69613 3.75615 3.84954 3.96690 4.01357 4.16344 4.33062 4.49473 4.52998 4.55920 4.66395 4.77044 4.79183 4.80342 4.90202 4.95541 4.97349 5.04395 5.15327 5.16303 5.25162 5.29488 5.46858 5.55750 5.60172 5.87280 5.95001 6.03100 6.57373 6.68405 6.88571 7.24830 8.78396 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027817 B = 0.003161 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.346441 B = 8854.564525 C = 9489.636656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.219 3.781 3 H 0.009 0.991 4 C -0.548 4.548 5 H 0.069 0.931 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.984 3.016 9 H -0.267 1.267 10 H -0.265 1.265 11 H -0.278 1.278 12 O -0.356 6.356 13 C 0.502 3.498 14 O -0.550 6.550 15 C -0.216 4.216 16 C 0.005 3.995 17 C -0.179 4.179 18 C 0.326 3.674 19 N -0.466 5.466 20 C 0.038 3.962 21 C -0.117 4.117 22 C -0.129 4.129 23 C 0.028 3.972 24 N -0.536 5.536 25 C 0.189 3.811 26 H 0.023 0.977 27 H 0.046 0.954 28 H 0.083 0.917 29 H 0.271 0.729 30 H 0.156 0.844 31 H 0.177 0.823 32 H 0.111 0.889 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.783 -7.974 -21.858 25.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.166 3.834 3 H 0.027 0.973 4 C -0.586 4.586 5 H 0.087 0.913 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.807 3.193 9 H -0.192 1.192 10 H -0.189 1.189 11 H -0.203 1.203 12 O -0.272 6.272 13 C 0.348 3.652 14 O -0.443 6.443 15 C -0.221 4.221 16 C -0.021 4.021 17 C -0.201 4.201 18 C 0.094 3.906 19 N -0.183 5.183 20 C -0.086 4.086 21 C -0.155 4.155 22 C -0.167 4.167 23 C -0.099 4.099 24 N -0.251 5.251 25 C 0.030 3.970 26 H 0.042 0.958 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.174 0.826 31 H 0.195 0.805 32 H 0.129 0.871 33 H 0.070 0.930 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 9.428 -8.346 -22.156 25.484 hybrid contribution -0.063 0.880 1.808 2.012 sum 9.365 -7.465 -20.347 23.610 Atomic orbital electron populations 1.22001 0.96695 1.00502 1.00879 1.20397 0.92055 0.92177 0.78799 0.97271 1.21295 1.33509 1.13980 0.89806 0.91252 1.25843 0.94707 0.95653 1.02153 1.70019 1.36579 1.23611 1.25270 0.85162 0.79027 0.78089 0.77012 1.19167 1.18928 1.20292 1.86518 1.76269 1.43192 1.21210 1.21408 0.74032 0.84961 0.84807 1.90744 1.50809 1.17483 1.85246 1.20112 1.12400 0.96536 0.93027 1.21462 0.89562 1.01262 0.89788 1.21470 1.04749 0.93618 1.00274 1.20589 0.91404 0.90838 0.87794 1.61786 1.26038 1.06187 1.24297 1.23536 0.84895 1.00826 0.99368 1.22541 1.01685 0.92134 0.99111 1.22463 0.96292 0.98729 0.99261 1.22987 1.00024 0.85634 1.01237 1.67787 1.18227 1.39927 0.99152 1.23056 0.87488 0.90941 0.95484 0.95826 0.93452 0.89887 0.91943 0.82649 0.80518 0.87116 0.93038 0.88652 0.89377 0.90667 0.89428 0.91365 0.90313 0.80986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.52 9.33 71.98 0.67 -6.84 16 2 C 0.22 12.24 2.56 29.85 0.08 12.32 16 3 H 0.01 0.59 7.16 -2.39 -0.02 0.57 16 4 C -0.55 -31.38 8.90 25.60 0.23 -31.15 16 5 H 0.07 3.87 7.81 -2.91 -0.02 3.84 16 6 C 0.02 0.90 5.30 84.66 0.45 1.34 16 7 N -0.92 -52.96 11.32 21.45 0.24 -52.72 16 8 Si 0.98 43.03 29.54 68.60 2.03 45.05 16 9 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 10 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 11 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 12 O -0.36 -17.58 9.13 -56.68 -0.52 -18.09 16 13 C 0.50 22.39 7.87 70.23 0.55 22.94 16 14 O -0.55 -27.35 15.67 19.80 0.31 -27.04 16 15 C -0.22 -7.43 5.89 -20.00 -0.12 -7.55 16 16 C 0.00 0.13 9.65 22.47 0.22 0.35 16 17 C -0.18 -3.90 9.38 22.22 0.21 -3.69 16 18 C 0.33 7.84 6.20 133.26 0.83 8.67 16 19 N -0.47 -8.87 5.28 -689.42 -3.64 -12.50 16 20 C 0.04 0.50 6.03 86.65 0.52 1.02 16 21 C -0.12 -1.06 7.06 31.80 0.22 -0.83 16 22 C -0.13 -1.48 6.93 31.48 0.22 -1.27 16 23 C 0.03 0.50 6.34 86.46 0.55 1.05 16 24 N -0.54 -15.21 8.10 -192.28 -1.56 -16.76 16 25 C 0.19 5.94 10.79 85.06 0.92 6.86 16 26 H 0.02 1.15 8.14 -2.38 -0.02 1.13 16 27 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.08 4.65 6.07 -2.39 -0.01 4.63 16 29 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 30 H 0.16 4.02 7.73 -2.91 -0.02 4.00 16 31 H 0.18 2.55 8.01 -2.91 -0.02 2.53 16 32 H 0.11 1.03 8.11 -2.39 -0.02 1.01 16 33 H 0.05 0.76 7.99 -2.39 -0.02 0.74 16 34 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 1.51 6.48 -2.38 -0.02 1.49 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.17 5.40 7.61 -2.91 -0.02 5.38 16 Total: -1.00 -68.63 334.86 3.45 -65.19 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 1.04 Total: 13.67 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 5.54 Total: 3.22 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -4.95 Total: -81.99 kcal Atomic # 8 Polarization: -44.93 SS G_CDS: -0.21 Total: -45.14 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -68.63 3.45 -65.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774087780.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.270 kcal (2) G-P(sol) polarization free energy of solvation -68.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds