Wall clock time and date at job start Tue Mar 31 2020 06:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47089 * 2 1 4 4 N 1.46504 * 109.47167 * 120.00435 * 2 1 3 5 5 C 1.36937 * 119.99646 * 274.99242 * 4 2 1 6 6 H 1.08004 * 120.00243 * 0.02562 * 5 4 2 7 7 C 1.38814 * 120.00237 * 179.97438 * 5 4 2 8 8 N 1.31615 * 119.99498 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00412 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47145 * 59.99798 * 9 7 5 11 11 H 1.48499 * 109.47335 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46905 * 300.00028 * 9 7 5 13 13 C 1.50706 * 109.47034 * 240.00121 * 2 1 3 14 14 C 1.38291 * 119.92804 * 279.72295 * 13 2 1 15 15 C 1.38107 * 120.06545 * 179.71935 * 14 13 2 16 16 C 1.38862 * 119.93199 * 0.55876 * 15 14 13 17 17 N 1.39955 * 120.07158 * 179.70224 * 16 15 14 18 18 C 1.46070 * 118.51853 * 269.40104 * 17 16 15 19 19 C 1.53130 * 109.91560 * 160.53628 * 18 17 16 20 20 C 1.53482 * 108.36282 * 47.97743 * 19 18 17 21 21 O 1.45432 * 108.10984 * 298.26775 * 20 19 18 22 22 C 1.33728 * 118.52419 * 89.12733 * 17 16 15 23 23 O 1.21509 * 118.45639 * 2.29262 * 22 17 16 24 24 C 1.38862 * 119.86038 * 359.71732 * 16 15 14 25 25 C 1.38113 * 119.92943 * 0.02562 * 24 16 15 26 26 H 1.09006 * 109.46860 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47033 * 299.99323 * 1 2 3 28 28 H 1.09000 * 109.47168 * 60.00167 * 1 2 3 29 29 H 0.96996 * 120.00579 * 95.00076 * 4 2 1 30 30 H 0.97007 * 120.00032 * 179.97438 * 8 7 5 31 31 H 1.08004 * 119.96378 * 0.02562 * 14 13 2 32 32 H 1.08000 * 120.03478 * 180.27106 * 15 14 13 33 33 H 1.09004 * 109.39292 * 280.66763 * 18 17 16 34 34 H 1.08997 * 109.39735 * 40.48557 * 18 17 16 35 35 H 1.08997 * 109.68678 * 167.69990 * 19 18 17 36 36 H 1.08997 * 109.67906 * 288.22245 * 19 18 17 37 37 H 1.08996 * 109.73780 * 57.92793 * 20 19 18 38 38 H 1.09003 * 109.73337 * 178.62045 * 20 19 18 39 39 H 1.08003 * 120.03613 * 179.97438 * 24 16 15 40 40 H 1.08001 * 119.96407 * 180.02562 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8921 1.0403 2.4243 7 6 2.6115 -0.6620 3.5093 8 7 2.9243 -1.9391 3.4501 9 14 2.7894 0.2696 5.1185 10 1 1.4669 0.8066 5.5284 11 1 3.2984 -0.6488 6.1685 12 1 3.7448 1.3920 4.9376 13 6 2.0323 -0.7104 -1.2305 14 6 2.0715 -2.0924 -1.2617 15 6 2.5258 -2.7465 -2.3900 16 6 2.9545 -2.0148 -3.4896 17 7 3.4214 -2.6745 -4.6322 18 6 4.8477 -2.9734 -4.7310 19 6 5.0783 -4.0804 -5.7637 20 6 4.2942 -3.7269 -7.0348 21 8 2.8811 -3.6760 -6.6947 22 6 2.5407 -3.0077 -5.5818 23 8 1.3785 -2.6862 -5.4322 24 6 2.9193 -0.6271 -3.4530 25 6 2.4589 0.0210 -2.3237 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 2.2491 -1.6318 1.1526 30 1 3.2477 -2.3964 4.2421 31 1 1.7417 -2.6609 -0.4046 32 1 2.5521 -3.8258 -2.4154 33 1 5.3854 -2.0758 -5.0365 34 1 5.2165 -3.3035 -3.7599 35 1 6.1411 -4.1508 -5.9954 36 1 4.7254 -5.0321 -5.3665 37 1 4.6179 -2.7557 -7.4089 38 1 4.4625 -4.4896 -7.7951 39 1 3.2525 -0.0551 -4.3065 40 1 2.4309 1.1003 -2.2948 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814661625.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:12 Heat of formation + Delta-G solvation = -29.449642 kcal Electronic energy + Delta-G solvation = -22804.372650 eV Core-core repulsion = 19391.825225 eV Total energy + Delta-G solvation = -3412.547425 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.40618 -39.18024 -37.33605 -36.54855 -34.87369 -32.56646 -31.75835 -30.72361 -29.17411 -27.95246 -26.68317 -24.44053 -23.80221 -22.83223 -22.12571 -20.26436 -19.55580 -18.40666 -17.81134 -17.36649 -16.66603 -15.65228 -15.36429 -15.23368 -14.96709 -14.50929 -14.27984 -13.97653 -13.88463 -13.33118 -13.10833 -13.00389 -12.79093 -12.50616 -12.08223 -11.93327 -11.85444 -11.75572 -11.27284 -11.09570 -10.88074 -10.82309 -10.66139 -10.43461 -10.30113 -10.00934 -9.67535 -9.16108 -8.96549 -8.64176 -8.27417 -6.99073 -5.78004 -3.06620 1.49161 1.70451 2.30703 2.62375 3.17543 3.43710 3.48127 3.48955 3.97624 4.10996 4.17117 4.51176 4.58619 4.72519 4.89526 5.05047 5.13935 5.17854 5.22424 5.34178 5.45047 5.55589 5.61648 5.69940 5.77388 5.86951 5.95984 6.10054 6.28833 6.36551 6.46842 6.59587 6.65824 6.69583 6.80141 6.98069 7.17980 7.28294 7.51557 7.68880 8.01377 8.40413 9.51692 10.07455 10.42963 11.44658 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029880 B = 0.003357 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.858429 B = 8337.673167 C = 8797.901934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.205 3.795 3 H 0.057 0.943 4 N -0.722 5.722 5 C -0.239 4.239 6 H 0.071 0.929 7 C -0.013 4.013 8 N -0.933 5.933 9 Si 0.908 3.092 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C -0.054 4.054 14 C -0.096 4.096 15 C -0.103 4.103 16 C 0.120 3.880 17 N -0.574 5.574 18 C 0.106 3.894 19 C -0.174 4.174 20 C 0.058 3.942 21 O -0.343 6.343 22 C 0.654 3.346 23 O -0.517 6.517 24 C -0.106 4.106 25 C -0.111 4.111 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.039 0.961 29 H 0.385 0.615 30 H 0.256 0.744 31 H 0.133 0.867 32 H 0.119 0.881 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.387 -2.849 -20.343 21.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.095 3.905 3 H 0.075 0.925 4 N -0.364 5.364 5 C -0.370 4.370 6 H 0.089 0.911 7 C -0.209 4.209 8 N -0.581 5.581 9 Si 0.739 3.261 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.055 4.055 14 C -0.114 4.114 15 C -0.123 4.123 16 C 0.031 3.969 17 N -0.317 5.317 18 C -0.016 4.016 19 C -0.212 4.212 20 C -0.016 4.016 21 O -0.255 6.255 22 C 0.408 3.592 23 O -0.400 6.400 24 C -0.125 4.125 25 C -0.130 4.130 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.220 0.780 30 H 0.066 0.934 31 H 0.150 0.850 32 H 0.137 0.863 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.124 0.876 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.690 -2.736 -20.366 21.322 hybrid contribution 0.554 0.055 0.947 1.099 sum 6.244 -2.680 -19.419 20.573 Atomic orbital electron populations 1.22422 0.98107 1.01301 1.00208 1.19250 0.92221 0.94980 0.84049 0.92484 1.42523 1.78242 1.10719 1.04928 1.19207 1.36684 0.93990 0.87156 0.91095 1.24733 1.02071 0.95995 0.98066 1.69648 1.50780 1.08667 1.29032 0.86258 0.77798 0.78583 0.83482 1.21244 1.21721 1.21273 1.20552 0.95215 0.93976 0.95751 1.20961 0.98740 0.94391 0.97355 1.21169 0.98685 0.99602 0.92825 1.17132 1.03153 0.90618 0.86009 1.44610 1.07814 1.60436 1.18798 1.21691 0.80364 0.98356 1.01184 1.22570 1.03005 0.99980 0.95621 1.23480 0.77110 1.03595 0.97413 1.86733 1.28321 1.69906 1.40490 1.17838 0.85200 0.77256 0.78898 1.91043 1.16897 1.54460 1.77604 1.21058 1.00289 0.92914 0.98264 1.20883 0.99646 0.99859 0.92655 0.93249 0.92368 0.94185 0.77994 0.93444 0.84965 0.86330 0.90742 0.89076 0.87626 0.89396 0.90418 0.86743 0.86500 0.85671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 9.47 37.16 0.35 -2.65 16 2 C 0.20 4.13 3.09 -69.08 -0.21 3.91 16 3 H 0.06 1.14 7.94 -51.93 -0.41 0.73 16 4 N -0.72 -17.93 5.07 -54.55 -0.28 -18.20 16 5 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 6 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -27.83 13.06 55.49 0.72 -27.10 16 9 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 C -0.05 -0.97 4.96 -104.59 -0.52 -1.49 16 14 C -0.10 -1.70 9.05 -39.61 -0.36 -2.06 16 15 C -0.10 -1.66 9.97 -39.40 -0.39 -2.05 16 16 C 0.12 1.80 4.14 -83.69 -0.35 1.45 16 17 N -0.57 -7.27 2.86 -119.56 -0.34 -7.61 16 18 C 0.11 0.86 6.47 -4.21 -0.03 0.83 16 19 C -0.17 -0.93 6.27 -26.41 -0.17 -1.10 16 20 C 0.06 0.37 7.21 37.41 0.27 0.64 16 21 O -0.34 -4.18 10.49 -39.26 -0.41 -4.59 16 22 C 0.65 9.74 8.28 53.59 0.44 10.18 16 23 O -0.52 -10.04 16.92 -19.41 -0.33 -10.37 16 24 C -0.11 -1.55 9.97 -39.40 -0.39 -1.95 16 25 C -0.11 -1.74 9.66 -39.61 -0.38 -2.12 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.38 10.03 6.04 -40.82 -0.25 9.78 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.13 2.47 6.89 -52.48 -0.36 2.11 16 32 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.73 8.10 -51.93 -0.42 0.31 16 35 H 0.11 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 40 H 0.13 1.70 8.03 -52.49 -0.42 1.28 16 LS Contribution 337.62 15.07 5.09 5.09 Total: -1.00 -34.21 337.62 -8.18 -42.39 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -5.64 Total: 6.79 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -1.98 Total: -3.56 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.11 Total: -52.92 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.74 Total: -14.95 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.21 -8.18 -42.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814661625.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.943 kcal (2) G-P(sol) polarization free energy of solvation -34.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds